Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.1304 Acer truncatum HOM05D000077 ORTHO05D052104 1.7e-20 101.7 51 100.0
Atru.chr1.1299 Acer truncatum HOM05D000077 ORTHO05D000552 1.5e-16 88.6 50 84.0
Atru.chr1.1295 Acer truncatum HOM05D000077 ORTHO05D000552 2.4e-14 81.3 49 81.6
Dinv20748 Davidia involucrata HOM05D000077 ORTHO05D000552 1.2e-13 79.0 50 76.0
Aqoxy3G01045 Aquilegia oxysepala HOM05D000077 ORTHO05D000552 2.7e-13 77.8 49 77.6
Lj2A410T64 Lonicera japonica HOM05D000077 ORTHO05D000552 3.5e-13 77.4 49 77.6
TAR633G2383 Trochodendron aralioides HOM05D000077 ORTHO05D000552 3.5e-13 77.4 50 74.0
TAR633G0446 Trochodendron aralioides HOM05D000077 ORTHO05D000552 4.6e-13 77.0 50 74.0
Ciclev10011533m.g Citrus clementina HOM05D000077 ORTHO05D000552 1.0e-12 75.9 50 72.0
MD14G1223200 Malus domestica HOM05D000077 ORTHO05D000552 1.1e-11 72.4 49 67.3
Potri.006G033600 Populus trichocarpa HOM05D000077 ORTHO05D000552 1.5e-11 72.0 49 71.4
TWI53G0629 Tripterygium wilfordii HOM05D000077 ORTHO05D000552 1.5e-11 72.0 49 69.4
FAN08G0372 Fragaria x ananassa HOM05D000077 ORTHO05D000552 1.9e-11 71.6 50 66.0
TAR636G2299 Trochodendron aralioides HOM05D000077 ORTHO05D000552 1.9e-11 71.6 50 66.0
Lj2C410G5 Lonicera japonica HOM05D000077 ORTHO05D000552 2.5e-11 71.2 49 69.4
MBI19_g45429_MAGBIO Magnolia biondii HOM05D000077 ORTHO05D000552 2.5e-11 71.2 50 66.0
Nitab4.5_0000123g0430 Nicotiana tabacum HOM05D000077 ORTHO05D000552 4.3e-11 70.5 51 70.6
Potri.016G031700 Populus trichocarpa HOM05D000077 ORTHO05D000552 4.3e-11 70.5 49 71.4
Potri.016G031850 Populus trichocarpa HOM05D000077 ORTHO05D000552 4.3e-11 70.5 49 71.4
CAN.G960.77 Capsicum annuum HOM05D000077 ORTHO05D000552 5.6e-11 70.1 51 68.6
FvH4_5g12550 Fragaria vesca HOM05D000077 ORTHO05D000552 5.6e-11 70.1 50 64.0
FAN18G3977 Fragaria x ananassa HOM05D000077 ORTHO05D000552 5.6e-11 70.1 50 64.0
FAN18G4501 Fragaria x ananassa HOM05D000077 ORTHO05D000552 5.6e-11 70.1 50 64.0
Hma1.2p1_2740F.1_g327730 Hydrangea macrophylla HOM05D000077 ORTHO05D000552 7.3e-11 69.7 46 73.9
FvH4_5g12570 Fragaria vesca HOM05D000077 ORTHO05D000552 9.6e-11 69.3 50 64.0
FAN13G2574 Fragaria x ananassa HOM05D000077 ORTHO05D000552 9.6e-11 69.3 50 64.0
Manes.08G011800 Manihot esculenta HOM05D000077 ORTHO05D000552 1.6e-10 68.6 49 67.3
Sopen10g028940 Solanum pennellii HOM05D000077 ORTHO05D000552 1.6e-10 68.6 51 70.6
PGSC0003DMG400007196 Solanum tuberosum HOM05D000077 ORTHO05D000552 1.6e-10 68.6 51 70.6
MD14G1222800 Malus domestica HOM05D000077 ORTHO05D000552 2.1e-10 68.2 49 65.3
Duzib114G0629 Durio zibethinus HOM05D000077 ORTHO05D000552 3.6e-10 67.4 49 63.3
FAN04G1826 Fragaria x ananassa HOM05D000077 ORTHO05D000552 3.6e-10 67.4 50 62.0
Nn7g36962 Nelumbo nucifera HOM05D000077 ORTHO05D000552 3.6e-10 67.4 50 62.0
RcHm_v2.0_Chr7g0184751 Rosa chinensis HOM05D000077 ORTHO05D000552 3.6e-10 67.4 50 62.0
Solyc10g078280.3 Solanum lycopersicum HOM05D000077 ORTHO05D000552 3.6e-10 67.4 52 69.2
FAN18G0251 Fragaria x ananassa HOM05D000077 ORTHO05D000552 6.2e-10 66.6 50 62.0
Nitab4.5_0004697g0070 Nicotiana tabacum HOM05D000077 ORTHO05D000552 6.2e-10 66.6 50 70.0
vmacro08984 Vaccinium macrocarpon HOM05D000077 ORTHO05D000552 6.2e-10 66.6 50 66.0
CSS0023295 Camellia sinensis var. sinensis HOM05D000077 ORTHO05D000552 8.1e-10 66.2 49 65.3
CSS0035033 Camellia sinensis var. sinensis HOM05D000077 ORTHO05D000552 8.1e-10 66.2 49 65.3
Lalb_Chr24g0400541 Lupinus albus HOM05D000077 ORTHO05D000552 8.1e-10 66.2 49 65.3
Nn7g36963 Nelumbo nucifera HOM05D000077 ORTHO05D000552 8.1e-10 66.2 50 64.0
Peaxi162Scf00003g05246 Petunia axillaris HOM05D000077 ORTHO05D000552 8.1e-10 66.2 51 68.6
FAN13G2792 Fragaria x ananassa HOM05D000077 ORTHO05D000552 1.1e-09 65.9 50 62.0
Rhsim04G0116200 Rhododendron simsii HOM05D000077 ORTHO05D000552 1.1e-09 65.9 51 66.7
Thecc.10G122700 Theobroma cacao HOM05D000077 ORTHO05D000552 1.4e-09 65.5 49 63.3
AUR62018391 Chenopodium quinoa HOM05D000077 ORTHO05D000552 1.8e-09 65.1 49 61.2
Gorai.011G227100 Gossypium raimondii HOM05D000077 ORTHO05D000552 1.8e-09 65.1 49 59.2
Lalb_Chr24g0400551 Lupinus albus HOM05D000077 ORTHO05D000552 1.8e-09 65.1 49 65.3
Gohir.D10G202400 Gossypium hirsutum HOM05D000077 ORTHO05D000552 2.4e-09 64.7 49 59.2
MBI13_g05465_MAGBIO Magnolia biondii HOM05D000077 ORTHO05D000552 2.4e-09 64.7 50 56.0
QL07p013192 Quercus lobata HOM05D000077 ORTHO05D000552 2.4e-09 64.7 50 60.0
Rhsim04G0116400 Rhododendron simsii HOM05D000077 ORTHO05D000552 2.4e-09 64.7 51 66.7
GSVIVG01025796001 Vitis vinifera HOM05D000077 ORTHO05D000552 2.4e-09 64.7 50 60.0
CANSAT78G2294 Cannabis sativa HOM05D000077 ORTHO05D000552 3.1e-09 64.3 49 61.2
MD06G1212400 Malus domestica HOM05D000077 ORTHO05D000552 3.1e-09 64.3 49 61.2
FvH4_5g12580 Fragaria vesca HOM05D000077 ORTHO05D000552 4.0e-09 63.9 50 60.0
MBI19_g02319_MAGBIO Magnolia biondii HOM05D000077 ORTHO05D000552 4.0e-09 63.9 49 61.2
PGR042G2999 Punica granatum HOM05D000077 ORTHO05D000552 4.0e-09 63.9 49 65.3
QL06p003817 Quercus lobata HOM05D000077 ORTHO05D000552 4.0e-09 63.9 50 60.0
Prupe.5G218500 Prunus persica HOM05D000077 ORTHO05D000552 5.3e-09 63.5 49 61.2
AUR62030269 Chenopodium quinoa HOM05D000077 ORTHO05D000552 6.9e-09 63.2 49 59.2
FAN18G2876 Fragaria x ananassa HOM05D000077 ORTHO05D000552 6.9e-09 63.2 46 65.2
Gohir.A10G195500 Gossypium hirsutum HOM05D000077 ORTHO05D000552 1.2e-08 62.4 49 57.1
Oeu005235.1 Olea europaea HOM05D000077 ORTHO05D000552 1.2e-08 62.4 50 64.0
Sabra16G0035000 Salix brachista HOM05D000077 ORTHO05D000552 1.2e-08 62.4 46 67.4
VMungo1383G0487 Vigna mungo HOM05D000077 ORTHO05D000552 1.2e-08 62.4 49 59.2
AUR62018392 Chenopodium quinoa HOM05D000077 ORTHO05D000552 1.5e-08 62.0 49 61.2
FAN18G0998 Fragaria x ananassa HOM05D000077 ORTHO05D000552 1.5e-08 62.0 51 60.8
Psat3g082680 Pisum sativum HOM05D000077 ORTHO05D000552 1.5e-08 62.0 49 61.2
TPR.G11020 Trifolium pratense HOM05D000077 ORTHO05D000552 1.5e-08 62.0 47 66.0
PGR042G2361 Punica granatum HOM05D000077 ORTHO05D000552 2.0e-08 61.6 50 60.0
TPR.G20689 Trifolium pratense HOM05D000077 ORTHO05D000552 2.0e-08 61.6 47 63.8
MSTRG.19780 Avicennia marina HOM05D000077 ORTHO05D000552 2.6e-08 61.2 50 62.0
RhsimUnG0019000 Rhododendron simsii HOM05D000077 ORTHO05D000552 2.6e-08 61.2 49 57.1
Glyma.03G122300 Glycine max HOM05D000077 ORTHO05D000552 3.4e-08 60.8 49 57.1
Nn2g14747 Nelumbo nucifera HOM05D000077 ORTHO05D000552 3.4e-08 60.8 50 54.0
Phvul.001G118600 Phaseolus vulgaris HOM05D000077 ORTHO05D000552 3.4e-08 60.8 49 57.1
TWI53G1184 Tripterygium wilfordii HOM05D000077 ORTHO05D000552 3.4e-08 60.8 49 57.1
RhsimUnG0019200 Rhododendron simsii HOM05D000077 ORTHO05D000552 4.4e-08 60.5 49 57.1
arahy.Tifrunner.gnm1.ann1.77KTPK Arachis hypogaea HOM05D000077 ORTHO05D000552 5.8e-08 60.1 49 59.2
Migut.J01622 Erythranthe guttata HOM05D000077 ORTHO05D000552 5.8e-08 60.1 50 60.0
Lalb_Chr24g0400531 Lupinus albus HOM05D000077 ORTHO05D000552 5.8e-08 60.1 47 61.7
Medtr7g088330 Medicago truncatula HOM05D000077 ORTHO05D000552 5.8e-08 60.1 49 61.2
THA.LOC104803229 Tarenaya hassleriana HOM05D000077 ORTHO05D000552 5.8e-08 60.1 49 59.2
BcaB02g07644 Brassica carinata HOM05D000077 ORTHO05D000552 7.6e-08 59.7 49 59.2
Cc06_g20240 Coffea canephora HOM05D000077 ORTHO05D000552 7.6e-08 59.7 51 62.7
SalBow6G1863 Salvia bowleyana HOM05D000077 ORTHO05D000552 7.6e-08 59.7 50 58.0
SGA_v2.0_scaffold66G22291 Striga asiatica HOM05D000077 ORTHO05D000552 7.6e-08 59.7 50 60.0
Thhalv10005910m.g Eutrema salsugineum HOM05D000077 ORTHO05D000552 9.9e-08 59.3 49 61.2
Aa31LG10G11450 Aethionema arabicum HOM05D000077 ORTHO05D000552 1.3e-07 58.9 49 61.2
PGR042G2675 Punica granatum HOM05D000077 ORTHO05D000552 1.3e-07 58.9 49 59.2
SEGI_37324 Sequoiadendron giganteum HOM05D000077 ORTHO05D000552 1.3e-07 58.9 49 55.1
Thecc.09G252600 Theobroma cacao HOM05D000077 ORTHO05D000339 1.3e-07 58.9 49 63.3
VMungo1383G3681 Vigna mungo HOM05D000077 ORTHO05D000339 1.3e-07 58.9 49 51.0
HPP92_001662 Vanilla planifolia HOM05D000077 ORTHO05D000552 1.7e-07 58.5 50 60.0
BcaC08g44798 Brassica carinata HOM05D000077 ORTHO05D000552 2.2e-07 58.2 49 57.1
C06p23690 Brassica napus HOM05D000077 ORTHO05D000552 2.2e-07 58.2 49 57.1
BolC6t37538H Brassica oleracea HOM05D000077 ORTHO05D000552 2.2e-07 58.2 49 57.1
MBI13_g38675_MAGBIO Magnolia biondii HOM05D000077 ORTHO05D000552 2.2e-07 58.2 50 52.0
Carub.0005s2338 Capsella rubella HOM05D000077 ORTHO05D000552 2.9e-07 57.8 49 57.1
A09p49500 Brassica napus HOM05D000077 ORTHO05D000552 3.8e-07 57.4 49 55.1
BraA09t40403Z Brassica rapa HOM05D000077 ORTHO05D000552 3.8e-07 57.4 49 55.1
CDE07G0053 Ceratophyllum demersum HOM05D000077 ORTHO05D000552 3.8e-07 57.4 49 59.2
AUR62018390 Chenopodium quinoa HOM05D000077 ORTHO05D000552 3.8e-07 57.4 49 57.1
FAN18G3625 Fragaria x ananassa HOM05D000077 ORTHO05D000552 3.8e-07 57.4 40 65.0
Ah.04g150670 Amaranthus hybridus HOM05D000077 ORTHO05D000552 4.9e-07 57.0 41 63.4
BcaB02g07643 Brassica carinata HOM05D000077 ORTHO05D000552 4.9e-07 57.0 49 55.1
ClCG10G016400 Citrullus lanatus HOM05D000077 ORTHO05D000552 4.9e-07 57.0 49 55.1
SEGI_19621 Sequoiadendron giganteum HOM05D000077 ORTHO05D000552 4.9e-07 57.0 49 57.1
AT3G56630 Arabidopsis thaliana HOM05D000077 ORTHO05D000552 6.4e-07 56.6 49 57.1
BcaC07g39971 Brassica carinata HOM05D000077 ORTHO05D000552 6.4e-07 56.6 49 55.1
C08p31900 Brassica napus HOM05D000077 ORTHO05D000552 6.4e-07 56.6 49 55.1
BolC8t50807H Brassica oleracea HOM05D000077 ORTHO05D000552 6.4e-07 56.6 49 55.1
CARHR166740 Cardamine hirsuta HOM05D000077 ORTHO05D000552 6.4e-07 56.6 49 57.1
MELO3C009737.2 Cucumis melo HOM05D000077 ORTHO05D000552 6.4e-07 56.6 49 53.1
Lj1g0019715 Lotus japonicus HOM05D000077 ORTHO05D000552 6.4e-07 56.6 47 57.4
AL5G38000 Arabidopsis lyrata HOM05D000077 ORTHO05D000552 8.4e-07 56.2 49 55.1
Ca_08234_v3 Cicer arietinum L. HOM05D000077 ORTHO05D000552 8.4e-07 56.2 46 58.7
MELO3C030719.2 Cucumis melo HOM05D000077 ORTHO05D000552 8.4e-07 56.2 49 53.1
DCAR_020598 Daucus carota HOM05D000077 ORTHO05D000552 8.4e-07 56.2 51 58.8
Lalb_Chr24g0400571 Lupinus albus HOM05D000077 ORTHO05D000552 8.4e-07 56.2 49 57.1
Psat0s697g0040 Pisum sativum HOM05D000077 ORTHO05D000552 8.4e-07 56.2 49 57.1
BraA07t29964Z Brassica rapa HOM05D000077 ORTHO05D000552 1.1e-06 55.8 49 59.2
Eucgr.A02194 Eucalyptus grandis HOM05D000077 ORTHO05D000552 1.1e-06 55.8 50 54.0
Eucgr.A02195 Eucalyptus grandis HOM05D000077 ORTHO05D000552 1.1e-06 55.8 50 54.0
AT1G34540 Arabidopsis thaliana HOM05D000077 ORTHO05D000552 1.4e-06 55.5 49 59.2
Sp5g05930 Schrenkiella parvula HOM05D000077 ORTHO05D000552 1.4e-06 55.5 49 55.1
Sed0003344 Sechium edule HOM05D000077 ORTHO05D000552 1.9e-06 55.1 49 53.1
Sc25g0005510 Simmondsia chinensis HOM05D000077 ORTHO05D000552 1.9e-06 55.1 49 55.1
TWI77G0425 Tripterygium wilfordii HOM05D000077 ORTHO05D000552 1.9e-06 55.1 49 51.0
BcaC08g44796 Brassica carinata HOM05D000077 ORTHO05D000552 2.4e-06 54.7 49 57.1
A07p23030 Brassica napus HOM05D000077 ORTHO05D000552 2.4e-06 54.7 49 55.1
C06p23670 Brassica napus HOM05D000077 ORTHO05D000552 2.4e-06 54.7 49 57.1
BolC6t37537H Brassica oleracea HOM05D000077 ORTHO05D000552 2.4e-06 54.7 49 57.1
BraA07t29965Z Brassica rapa HOM05D000077 ORTHO05D000552 2.4e-06 54.7 49 55.1
A07p23020 Brassica napus HOM05D000077 ORTHO05D000552 3.2e-06 54.3 49 57.1
ClCG06G006920 Citrullus lanatus HOM05D000077 ORTHO05D000552 3.2e-06 54.3 49 57.1
CsaV3_3G039940 Cucumis sativus L. HOM05D000077 ORTHO05D000552 3.2e-06 54.3 49 51.0
AUR62030270 Chenopodium quinoa HOM05D000077 ORTHO05D000552 4.2e-06 53.9 49 55.1
AL1G49030 Arabidopsis lyrata HOM05D000077 ORTHO05D000552 5.4e-06 53.5 49 57.1
SEGI_30248 Sequoiadendron giganteum HOM05D000077 ORTHO05D000552 5.4e-06 53.5 46 56.5
RhsimUnG0019500 Rhododendron simsii HOM05D000077 ORTHO05D000552 7.1e-06 53.1 44 56.8
unitig_22.g6126 Utricularia gibba HOM05D000077 ORTHO05D000552 7.1e-06 53.1 50 58.0


User provided reference genes

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