Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.1245 Acer truncatum HOM05D001672 ORTHO05D008153 4.9e-42 174.1 90 100.0
Ciclev10005039m.g Citrus clementina HOM05D001672 ORTHO05D008153 7.3e-22 107.1 91 72.5
Duzib093G1214 Durio zibethinus HOM05D001672 ORTHO05D008153 2.2e-18 95.5 90 58.9
Thecc.05G144700 Theobroma cacao HOM05D001672 ORTHO05D008153 1.6e-16 89.4 89 57.3
Dinv18689 Davidia involucrata HOM05D001672 ORTHO05D008153 4.6e-16 87.8 90 61.1
Manes.09G016710 Manihot esculenta HOM05D001672 ORTHO05D008153 7.8e-16 87.0 89 55.1
Gohir.D13G011600 Gossypium hirsutum HOM05D001672 ORTHO05D008153 1.3e-15 86.3 90 57.8
Dinv30293 Davidia involucrata HOM05D001672 ORTHO05D008153 5.1e-15 84.3 90 58.9
Potri.006G045200 Populus trichocarpa HOM05D001672 ORTHO05D008153 6.6e-15 84.0 93 62.4
Cpa.g.sc120.14 Carica papaya HOM05D001672 ORTHO05D008153 1.5e-14 82.8 92 58.7
Gohir.A13G010900 Gossypium hirsutum HOM05D001672 ORTHO05D008153 1.5e-14 82.8 90 54.4
Prupe.7G049700 Prunus persica HOM05D001672 ORTHO05D008153 3.3e-14 81.6 91 56.0
Cfa016750 Carpinus fangiana HOM05D001672 ORTHO05D008153 7.3e-14 80.5 87 55.2
Sabra06G0031100 Salix brachista HOM05D001260 ORTHO05D002424 9.6e-14 80.1 93 60.2
RcHm_v2.0_Chr4g0409641 Rosa chinensis HOM05D001672 ORTHO05D008153 2.1e-13 79.0 90 55.6
CANSAT80G2358 Cannabis sativa HOM05D001672 ORTHO05D008153 2.8e-13 78.6 96 54.2
CANSAT80G1353 Cannabis sativa HOM05D001672 ORTHO05D008153 3.6e-13 78.2 96 54.2
TAR636G0319 Trochodendron aralioides HOM05D001672 ORTHO05D008153 3.6e-13 78.2 52 76.9
Nn2g15055 Nelumbo nucifera HOM05D001672 ORTHO05D008153 4.7e-13 77.8 52 76.9
FAN07G0795 Fragaria x ananassa HOM05D001672 ORTHO05D008153 8.1e-13 77.0 90 55.6
FvH4_4g12020 Fragaria vesca HOM05D001672 ORTHO05D008153 1.1e-12 76.6 90 55.6
FAN17G0860 Fragaria x ananassa HOM05D001672 ORTHO05D008153 1.1e-12 76.6 90 55.6
COL.COLO4_21292 Corchorus olitorius HOM05D001672 ORTHO05D008153 1.8e-12 75.9 90 55.6
FAN12G1117 Fragaria x ananassa HOM05D001672 ORTHO05D008153 2.4e-12 75.5 90 55.6
FAN12G1718 Fragaria x ananassa HOM05D001672 ORTHO05D008153 2.4e-12 75.5 90 55.6
FAN22G1650 Fragaria x ananassa HOM05D001672 ORTHO05D008153 4.0e-12 74.7 90 56.7
TWI74G0460 Tripterygium wilfordii HOM05D001672 ORTHO05D008153 4.0e-12 74.7 91 50.5
Actinidia38144 Actinidia chinensis HOM05D001260 ORTHO05D002424 6.9e-12 73.9 52 73.1
GSVIVG01033556001 Vitis vinifera HOM05D001672 ORTHO05D008153 6.9e-12 73.9 85 55.3
Aa31LG10G12100 Aethionema arabicum HOM05D001672 ORTHO05D008153 1.5e-11 72.8 90 52.2
Hma1.2p1_0222F.1_g093440 Hydrangea macrophylla HOM05D001672 ORTHO05D008153 1.5e-11 72.8 91 51.6
Sp5g05380 Schrenkiella parvula HOM05D001672 ORTHO05D008153 2.0e-11 72.4 52 71.2
A09p50130 Brassica napus HOM05D001672 ORTHO05D008153 4.4e-11 71.2 52 71.2
C08p32500 Brassica napus HOM05D001672 ORTHO05D008153 4.4e-11 71.2 52 71.2
BraA09t40464Z Brassica rapa HOM05D001672 ORTHO05D008153 4.4e-11 71.2 52 71.2
CiPaw.09G042600 Carya illinoinensis HOM05D001672 ORTHO05D008153 5.8e-11 70.9 94 50.0
Sopen10g030450 Solanum pennellii HOM05D001672 ORTHO05D008153 5.8e-11 70.9 85 51.8
Carub.0005s2401 Capsella rubella HOM05D001672 ORTHO05D008153 1.7e-10 69.3 52 71.2
Solyc10g079840.2 Solanum lycopersicum HOM05D001672 ORTHO05D008153 1.7e-10 69.3 58 63.8
CDE08G1323 Ceratophyllum demersum HOM05D001672 ORTHO05D008153 2.2e-10 68.9 52 63.5
Thhalv10006006m.g Eutrema salsugineum HOM05D001672 ORTHO05D008153 2.2e-10 68.9 73 56.2
PSO339G3968 Papaver somniferum HOM05D001672 ORTHO05D008153 2.9e-10 68.6 63 61.9
Eucgr.K01580 Eucalyptus grandis HOM05D001672 ORTHO05D008153 3.8e-10 68.2 89 49.4
EL10Ac3g07168 Beta vulgaris HOM05D001672 ORTHO05D008153 4.9e-10 67.8 52 65.4
AL5G38680 Arabidopsis lyrata HOM05D001672 ORTHO05D008153 6.4e-10 67.4 52 69.2
AT3G57190 Arabidopsis thaliana HOM05D001672 ORTHO05D008153 6.4e-10 67.4 52 69.2
CSS0031282 Camellia sinensis var. sinensis HOM05D001672 ORTHO05D008153 6.4e-10 67.4 82 51.2
CARHR167390 Cardamine hirsuta HOM05D001672 ORTHO05D008153 6.4e-10 67.4 85 50.6
Peaxi162Scf01315g00113 Petunia axillaris HOM05D001672 ORTHO05D008153 8.4e-10 67.0 49 67.3
PGR142G0049 Punica granatum HOM05D001672 ORTHO05D008153 8.4e-10 67.0 50 68.0
Lalb_Chr21g0316621 Lupinus albus HOM05D001672 ORTHO05D008153 1.1e-09 66.6 58 60.3
Nitab4.5_0000677g0050 Nicotiana tabacum HOM05D001672 ORTHO05D008153 1.1e-09 66.6 45 73.3
arahy.Tifrunner.gnm1.ann1.MWR02K Arachis hypogaea HOM05D001672 ORTHO05D008153 2.4e-09 65.5 52 65.4
arahy.Tifrunner.gnm1.ann1.68Y0RY Arachis hypogaea HOM05D001672 ORTHO05D008153 3.2e-09 65.1 54 61.1
Eucgr.F00951 Eucalyptus grandis HOM05D001672 ORTHO05D008153 3.2e-09 65.1 53 62.3
PSO384G4779 Papaver somniferum HOM05D001672 ORTHO05D008153 3.2e-09 65.1 89 49.4
Nitab4.5_0000562g0010 Nicotiana tabacum HOM05D001672 ORTHO05D008153 4.2e-09 64.7 79 49.4
Migut.J01698 Erythranthe guttata HOM05D001672 ORTHO05D008153 5.4e-09 64.3 45 68.9
HPP92_001435 Vanilla planifolia HOM05D001672 ORTHO05D008153 5.4e-09 64.3 56 55.4
BcaC07g40066 Brassica carinata HOM05D001672 ORTHO05D008153 1.2e-08 63.2 45 73.3
Lj5g0021823 Lotus japonicus HOM05D001672 ORTHO05D008153 1.2e-08 63.2 54 61.1
Hund19122 Selenicereus undatus HOM05D001672 ORTHO05D008153 1.2e-08 63.2 52 61.5
Eucgr.F03826 Eucalyptus grandis HOM05D001672 ORTHO05D008153 2.7e-08 62.0 53 60.4
VMungo0720G0829 Vigna mungo HOM05D001672 ORTHO05D008153 2.7e-08 62.0 59 59.3
Ca_11913_v3 Cicer arietinum L. HOM05D001672 ORTHO05D008153 3.5e-08 61.6 52 61.5
Sc19g0008400 Simmondsia chinensis HOM05D001672 ORTHO05D008153 3.5e-08 61.6 54 57.4
DCAR_013618 Daucus carota HOM05D001672 ORTHO05D008153 6.0e-08 60.8 68 50.0
Phvul.007G249100 Phaseolus vulgaris HOM05D001672 ORTHO05D008153 6.0e-08 60.8 53 64.2
Glyma.10G105300 Glycine max HOM05D001672 ORTHO05D008153 7.8e-08 60.5 78 47.4
MBI19_g08305_MAGBIO Magnolia biondii HOM05D001672 ORTHO05D008153 7.8e-08 60.5 45 68.9
AUR62030395 Chenopodium quinoa HOM05D001672 ORTHO05D008153 1.0e-07 60.1 45 62.2
Glyma.03G008400 Glycine max HOM05D001672 ORTHO05D008153 1.0e-07 60.1 78 48.7
THA.LOC104824425 Tarenaya hassleriana HOM05D001672 ORTHO05D008153 1.0e-07 60.1 87 47.1
ATR0721G134 Amborella trichopoda HOM05D001672 ORTHO05D008153 1.3e-07 59.7 52 55.8
PGSC0003DMG400029846 Solanum tuberosum HOM05D001672 ORTHO05D008153 1.3e-07 59.7 61 57.4
Cc06_g18400 Coffea canephora HOM05D001672 ORTHO05D008153 1.7e-07 59.3 85 44.7
TPR.G19649 Trifolium pratense HOM05D001672 ORTHO05D008153 2.3e-07 58.9 90 43.3
HanXRQChr06g0176831 Helianthus annuus HOM05D001672 ORTHO05D008153 5.1e-07 57.8 39 74.4
Lsat_1_v5_gn_5_6501 Lactuca sativa HOM05D001672 ORTHO05D008153 8.7e-07 57.0 42 69.0
Lsat_1_v5_gn_8_83140 Lactuca sativa HOM05D001672 ORTHO05D008153 8.7e-07 57.0 42 69.0
Zm00001eb286770 Zea mays HOM05D001672 ORTHO05D008153 1.5e-06 56.2 39 71.8
CAN.G1656.9 Capsicum annuum HOM05D001672 ORTHO05D008153 3.3e-06 55.1 37 75.7
ECA236G2794 Erigeron canadensis HOM05D001672 ORTHO05D008153 4.3e-06 54.7 40 67.5
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 7.3e-06 53.9 62 58.1
Aqoxy2G00268 Aquilegia oxysepala HOM05D001672 ORTHO05D008153 7.3e-06 53.9 62 58.1
SGA_v2.0_scaffold105G30346 Striga asiatica HOM05D001672 ORTHO05D008153 7.3e-06 53.9 45 55.6


User provided reference genes

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