Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 0.0e+00 1575.5 844 100.0
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 0.0e+00 1208.4 840 78.3
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 0.0e+00 1100.1 839 72.3
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 0.0e+00 1099.0 837 71.6
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 0.0e+00 1094.3 837 71.6
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 0.0e+00 1086.6 838 71.2
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 0.0e+00 1081.2 834 72.2
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 0.0e+00 1076.2 839 70.7
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 5.8e-312 1073.5 837 70.5
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 2.0e-310 1068.9 831 70.0
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 2.5e-310 1068.5 837 71.0
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 7.0e-308 1060.4 838 70.5
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 7.7e-307 1057.0 834 69.9
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 3.8e-306 1054.7 839 69.8
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 1.9e-305 1052.4 841 68.7
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 3.2e-305 1051.6 841 68.8
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 3.2e-305 1051.6 836 68.8
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 1.8e-303 1045.8 831 70.0
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 5.2e-303 1044.3 844 69.8
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 2.6e-302 1042.0 846 68.7
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 5.7e-302 1040.8 828 68.8
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 1.7e-301 1039.3 835 68.4
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 2.2e-301 1038.9 839 69.1
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.8e-300 1035.8 832 67.5
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 2.9e-298 1028.5 853 67.3
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 1.6e-296 1022.7 842 66.6
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 1.0e-295 1020.0 830 67.2
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 4.0e-295 1018.1 843 66.8
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 6.8e-295 1017.3 843 66.5
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 8.8e-295 1016.9 843 66.5
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 1.2e-294 1016.5 834 66.2
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 3.4e-294 1015.0 839 67.2
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 9.8e-294 1013.4 839 66.6
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 1.4e-292 1009.6 844 65.5
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 2.4e-292 1008.8 840 66.0
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 4.1e-292 1008.1 826 66.1
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 1.2e-291 1006.5 839 66.4
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.2e-291 1006.5 827 66.0
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 2.7e-291 1005.4 828 66.3
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 4.5e-291 1004.6 847 65.9
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 2.9e-290 1001.9 834 66.4
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 7.2e-289 997.3 843 66.5
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 1.2e-288 996.5 839 66.6
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 2.8e-288 995.3 832 65.6
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 1.8e-287 992.6 861 65.7
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.5e-286 989.6 853 65.8
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 4.4e-286 988.0 833 65.8
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 9.8e-286 986.9 840 66.5
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 5.9e-283 977.6 835 65.1
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.1e-281 973.4 853 64.6
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 1.5e-278 963.0 832 64.5
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 2.0e-278 962.6 828 65.3
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.3e-277 959.9 827 62.5
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 1.1e-276 956.8 832 64.2
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.2e-275 953.4 837 61.8
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 1.6e-275 953.0 828 63.4
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 6.0e-275 951.0 835 62.8
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 5.0e-274 948.0 851 63.8
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 4.3e-273 944.9 825 65.0
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 5.2e-271 937.9 828 63.8
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 9.8e-270 933.7 853 63.5
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 8.3e-269 930.6 839 62.6
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 1.4e-268 929.9 844 62.3
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 1.4e-268 929.9 836 63.8
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 1.7e-266 922.9 831 60.0
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 1.7e-266 922.9 838 61.3
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.7e-266 922.9 837 60.1
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 8.6e-266 920.6 864 60.8
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 4.6e-259 898.3 809 61.9
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 2.5e-257 892.5 841 59.0
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 3.3e-257 892.1 937 55.5
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 9.6e-257 890.6 835 61.8
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 9.6e-257 890.6 835 61.8
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 4.7e-256 888.3 814 62.3
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 2.4e-255 885.9 839 58.6
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 1.3e-253 880.2 838 61.2
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 2.2e-253 879.4 833 61.1
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 2.2e-253 879.4 833 61.1
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 2.4e-252 875.9 841 60.5
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 8.7e-250 867.5 883 58.1
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 3.6e-248 862.1 838 58.9
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 1.4e-247 860.1 831 60.4
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 1.5e-246 856.7 842 60.0
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 1.3e-240 837.0 795 60.3
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 1.3e-240 837.0 853 56.6
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 6.2e-240 834.7 832 59.5
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 1.1e-239 833.9 828 60.0
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 1.4e-239 833.6 849 57.0
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 1.7e-237 826.6 854 55.6
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 2.7e-235 819.3 852 54.9
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 1.3e-234 817.0 842 55.2
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 3.3e-233 812.4 838 55.7
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 4.9e-229 798.5 849 55.2
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 4.3e-225 785.4 681 64.6
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 2.0e-222 776.5 687 61.9
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 2.4e-215 753.1 843 52.3
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 1.4e-207 727.2 822 51.6
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 6.9e-207 724.9 623 63.1
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.6e-203 713.8 848 51.3
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 5.9e-198 695.3 839 48.9
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 6.7e-194 681.8 548 66.2
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.9e-189 666.4 608 63.7
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 4.7e-171 605.9 606 57.6
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 2.9e-160 570.1 886 42.4
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 2.0e-145 520.8 850 41.9
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 1.7e-141 507.7 454 61.9
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 2.3e-141 507.3 384 72.1
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.1e-139 500.7 490 60.4
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 6.2e-139 499.2 867 39.3
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 1.4e-138 498.0 850 38.7
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 7.3e-132 475.7 389 67.1
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 9.9e-121 438.7 448 60.3
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 3.2e-119 433.7 441 56.2
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 2.0e-113 414.5 947 32.8
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.3e-109 401.0 311 69.8
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 1.4e-95 355.1 322 62.4
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 1.8e-93 348.2 294 62.6
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 5.1e-93 346.7 449 45.9
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 1.1e-90 339.0 296 68.9
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 2.3e-85 321.2 338 53.3
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 1.5e-84 318.5 238 72.3
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 4.8e-83 313.5 233 73.0
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 1.0e-80 305.8 227 69.6
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 5.3e-74 283.5 200 71.0
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 3.8e-72 277.3 265 63.0
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 1.2e-62 245.7 962 28.2
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 4.3e-55 220.7 211 56.4
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 2.8e-54 218.0 195 62.1
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 5.7e-52 210.3 161 66.5
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 3.5e-49 201.1 181 61.9
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.2e-43 181.8 184 63.6
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 3.2e-42 177.9 218 50.9
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 7.8e-41 173.3 156 60.3
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 1.5e-39 169.1 152 59.9
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.3e-35 156.0 110 74.5
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 1.7e-35 155.6 170 54.7
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 1.5e-31 142.5 276 41.3
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 3.6e-30 137.9 179 46.9
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 8.1e-30 136.7 278 40.3
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 1.1e-29 136.3 518 26.1
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 8.9e-29 133.3 285 38.9
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 8.9e-29 133.3 591 24.9
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 2.6e-28 131.7 104 66.3
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 3.4e-28 131.3 672 23.8
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 3.2e-26 124.8 73 75.3
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 3.6e-22 111.3 118 53.4
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 1.8e-21 109.0 98 64.3
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 2.9e-19 101.7 176 48.9
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 2.4e-18 98.6 201 46.8
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 9.3e-18 96.7 198 47.0
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.7e-16 92.4 52 80.8
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 3.9e-16 91.3 76 63.2
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.1e-13 83.2 63 61.9
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 1.5e-12 79.3 55 67.3
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 1.4e-10 72.8 99 48.5
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 6.0e-09 67.4 65 55.4
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.0e-08 66.6 132 43.2
FAN24G0390 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.3e-08 66.2 60 56.7
FvH4_6g51840 Fragaria vesca HOM05D004092 ORTHO05D016651 3.0e-08 65.1 62 56.5
FAN01G1588 Fragaria x ananassa HOM05D004092 ORTHO05D016651 3.0e-08 65.1 62 56.5


User provided reference genes

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