Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 2.6e-228 795.0 403 100.0
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 3.3e-199 698.4 393 90.8
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 3.2e-194 681.8 374 90.9
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 1.5e-188 662.9 388 85.6
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 1.7e-187 659.4 392 84.7
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 6.5e-187 657.5 380 85.8
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 2.5e-186 655.6 391 84.9
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 4.2e-186 654.8 388 84.8
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 7.2e-186 654.1 380 85.0
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 7.2e-186 654.1 380 85.0
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 9.4e-186 653.7 372 86.8
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 2.7e-185 652.1 382 84.6
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 6.1e-185 651.0 399 82.2
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 7.9e-185 650.6 392 83.7
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 2.3e-184 649.0 399 82.2
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 2.3e-184 649.0 397 82.4
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 6.7e-184 647.5 390 84.1
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.5e-183 646.4 399 82.7
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 4.4e-183 644.8 397 83.1
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 4.4e-183 644.8 391 83.6
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 9.7e-183 643.7 390 82.6
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 1.3e-182 643.3 393 82.2
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 1.7e-182 642.9 391 83.4
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 4.1e-181 638.3 391 82.9
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 7.0e-181 637.5 394 81.2
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.6e-180 636.3 392 82.1
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 1.6e-180 636.3 371 85.4
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 2.6e-180 635.6 391 82.4
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 4.5e-180 634.8 397 81.1
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 4.5e-180 634.8 371 85.7
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 4.5e-180 634.8 395 81.0
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 1.0e-179 633.6 374 84.2
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 1.0e-179 633.6 388 82.0
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 1.7e-179 632.9 386 81.9
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 1.7e-179 632.9 386 81.6
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 1.7e-179 632.9 368 85.9
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 1.7e-179 632.9 388 82.5
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 2.9e-179 632.1 372 84.9
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 3.8e-179 631.7 385 83.1
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 6.5e-179 630.9 376 83.5
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 6.5e-179 630.9 394 80.7
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 1.1e-178 630.2 376 83.5
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 2.5e-178 629.0 371 84.9
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 4.2e-178 628.2 378 82.8
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 5.5e-178 627.9 388 81.2
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 1.2e-177 626.7 388 81.4
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 1.6e-177 626.3 377 83.3
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 2.1e-177 625.9 394 80.2
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 4.7e-177 624.8 393 81.9
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 1.4e-176 623.2 393 80.7
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 2.3e-176 622.5 374 83.7
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 4.0e-176 621.7 376 83.8
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 1.2e-175 620.2 400 79.2
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 2.6e-175 619.0 385 81.3
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 3.3e-175 618.6 375 83.5
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 3.3e-175 618.6 376 83.2
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 5.7e-175 617.8 391 79.5
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 1.3e-174 616.7 396 80.1
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 1.3e-174 616.7 377 81.7
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 1.3e-174 616.7 372 81.7
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 1.7e-174 616.3 375 82.1
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 2.8e-174 615.5 374 81.6
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 3.7e-174 615.1 386 79.8
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 1.1e-173 613.6 391 78.5
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 2.4e-173 612.5 374 81.3
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 4.1e-173 611.7 390 79.2
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 1.6e-172 609.8 371 80.6
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 3.5e-172 608.6 376 81.4
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 4.5e-172 608.2 386 79.8
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 5.9e-172 607.8 391 77.7
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 1.3e-171 606.7 367 82.3
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 1.7e-171 606.3 382 80.4
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 2.2e-171 605.9 393 79.1
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 5.0e-171 604.7 391 79.3
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 1.9e-170 602.8 373 81.0
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 7.2e-170 600.9 371 80.3
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 4.7e-169 598.2 386 77.5
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 3.0e-168 595.5 371 79.2
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 3.0e-168 595.5 371 79.5
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 3.0e-168 595.5 363 81.0
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 3.0e-168 595.5 393 77.9
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 8.8e-168 594.0 399 74.9
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 8.8e-168 594.0 385 79.0
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 1.2e-167 593.6 371 79.5
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 1.2e-167 593.6 401 74.3
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 1.2e-167 593.6 385 79.5
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 3.4e-167 592.0 371 79.2
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 5.7e-167 591.3 402 74.4
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 5.7e-167 591.3 374 78.1
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 5.7e-167 591.3 371 78.4
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 5.7e-167 591.3 371 78.4
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 5.7e-167 591.3 371 78.4
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 1.7e-166 589.7 395 75.7
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 1.7e-166 589.7 388 76.5
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 2.2e-166 589.3 394 75.6
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 2.2e-166 589.3 394 75.6
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 2.8e-166 589.0 371 78.7
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 4.8e-166 588.2 395 75.4
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 6.3e-166 587.8 391 76.7
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 6.3e-166 587.8 387 76.7
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 1.8e-165 586.3 373 79.1
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 3.1e-165 585.5 393 76.1
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 3.1e-165 585.5 399 73.7
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 4.1e-165 585.1 376 79.8
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 5.4e-165 584.7 393 77.9
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 7.0e-165 584.3 393 75.6
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 7.0e-165 584.3 388 75.5
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 9.1e-165 583.9 390 76.4
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 1.2e-164 583.6 358 80.7
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 1.2e-164 583.6 374 78.3
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 2.7e-164 582.4 393 75.6
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 1.0e-163 580.5 358 80.2
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 1.7e-163 579.7 371 78.2
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 2.2e-163 579.3 372 79.6
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 1.2e-161 573.5 395 73.7
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 4.7e-161 571.6 386 75.9
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 1.0e-160 570.5 390 76.4
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 2.3e-160 569.3 374 76.5
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 5.2e-160 568.2 398 72.9
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 2.0e-159 566.2 374 78.1
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 7.5e-159 564.3 372 75.5
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 9.8e-159 563.9 343 81.0
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 1.3e-158 563.5 424 70.8
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 4.5e-156 555.1 440 66.6
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 7.7e-156 554.3 387 71.8
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 2.3e-155 552.7 393 72.3
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 8.6e-155 550.8 317 86.1
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 2.8e-153 545.8 362 79.0
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 1.5e-151 540.0 417 69.1
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 4.9e-150 535.0 388 70.9
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 2.0e-148 529.6 435 66.4
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 1.2e-145 520.4 402 68.7
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 2.1e-145 519.6 356 71.1
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 4.7e-145 518.5 380 68.9
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 8.9e-144 514.2 374 69.3
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 1.2e-143 513.8 311 82.3
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 7.5e-143 511.1 304 82.9
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 4.1e-141 505.4 320 78.1
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 1.2e-140 503.8 297 84.5
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 3.4e-135 485.7 376 65.2
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 2.2e-134 483.0 399 65.9
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 1.4e-133 480.3 388 64.9
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 5.4e-133 478.4 399 66.7
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 7.8e-132 474.6 329 74.2
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 3.9e-131 472.2 373 64.6
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 5.1e-131 471.9 400 60.8
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 5.2e-128 461.8 387 62.8
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 8.6e-123 444.5 370 64.1
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 1.5e-119 433.7 241 89.2
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 2.8e-113 412.9 335 65.1
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 3.2e-101 372.9 253 73.1
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 3.3e-98 362.8 211 86.7
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 5.3e-96 355.5 213 81.2
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 7.9e-92 341.7 398 49.0
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 5.3e-88 328.9 365 49.6
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 2.6e-87 326.6 372 49.5
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 5.0e-86 322.4 273 59.7
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 4.2e-85 319.3 346 54.9
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 3.3e-74 283.1 180 77.8
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 1.3e-65 254.6 222 62.2
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 1.2e-63 248.1 308 45.1
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 4.0e-59 233.0 284 46.1
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 4.4e-58 229.6 133 83.5
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 1.7e-57 227.6 219 56.2
Cfa024885 Carpinus fangiana HOM05D003740 ORTHO05D004611 1.8e-56 224.2 304 41.8
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 1.2e-50 204.9 120 80.8
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 4.8e-49 199.5 183 58.5
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 1.8e-43 181.0 393 36.6
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 4.5e-39 166.4 113 74.3
TPR.G13517 Trifolium pratense HOM05D003740 ORTHO05D027079 2.5e-29 134.0 88 73.9
vmacro09045 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 7.3e-29 132.5 78 80.8
MBI05_g15360_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 6.4e-25 119.4 69 84.1
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 2.5e-21 107.5 75 68.0
BcaC09g48688 Brassica carinata HOM05D003740 ORTHO05D027079 3.7e-17 93.6 84 56.0
BNapus_Darmor_BZH_scaffold_38p00040 Brassica napus HOM05D003740 ORTHO05D027079 1.9e-16 91.3 108 49.1
Nitab4.5_0001618g0330 Nicotiana tabacum HOM05D003740 ORTHO05D004611 1.9e-16 91.3 54 75.9
BcaC02g11255 Brassica carinata HOM05D003740 ORTHO05D015230 9.2e-16 89.0 55 74.5
TPR.G2297 Trifolium pratense HOM05D003740 ORTHO05D411092 3.9e-14 83.6 141 39.0
TPR.G40499 Trifolium pratense HOM05D003740 ORTHO05D004611 6.2e-12 76.3 60 65.0
Psat6g009800 Pisum sativum HOM05D003740 ORTHO05D004611 1.6e-07 61.6 41 70.7
A03p42520 Brassica napus HOM05D024621 ORTHO05D015230 6.0e-07 59.7 55 60.0
BolC4t23402H Brassica oleracea HOM05D003740 ORTHO05D015230 5.1e-06 56.6 35 71.4


User provided reference genes

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