Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 1.5e-268 929.1 518 100.0
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 3.6e-145 519.2 562 58.9
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 3.1e-141 506.1 518 58.3
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 6.9e-141 505.0 541 57.3
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 2.0e-140 503.4 523 57.2
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 2.6e-140 503.1 515 57.3
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 1.7e-139 500.4 526 56.8
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 5.0e-139 498.8 529 60.3
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 6.5e-139 498.4 526 56.3
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 6.5e-139 498.4 528 59.1
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 7.2e-138 495.0 527 55.8
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 1.6e-137 493.8 452 60.2
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 4.6e-137 492.3 545 57.8
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 1.4e-136 490.7 524 55.5
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.1e-135 487.6 463 60.0
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 3.7e-134 482.6 461 59.4
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 4.8e-134 482.3 525 56.0
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 3.1e-133 479.6 464 59.5
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 1.2e-132 477.6 525 55.2
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 2.9e-131 473.0 466 58.8
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 5.0e-131 472.2 538 56.9
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 1.4e-128 464.2 526 57.6
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 1.7e-126 457.2 524 54.6
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 4.5e-124 449.1 526 55.3
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.1e-122 444.5 555 55.0
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 4.2e-122 442.6 525 57.0
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 2.7e-121 439.9 539 53.2
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 6.1e-121 438.7 520 51.5
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 2.3e-120 436.8 523 50.1
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 2.6e-119 433.3 517 49.9
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 4.4e-119 432.6 478 59.4
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 5.7e-119 432.2 502 52.0
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 9.7e-119 431.4 502 52.2
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 8.2e-118 428.3 361 63.7
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 4.1e-117 426.0 525 51.0
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 2.7e-116 423.3 513 53.2
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 1.0e-115 421.4 506 50.2
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 1.3e-115 421.0 524 51.5
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 3.8e-115 419.5 456 54.6
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 6.5e-115 418.7 515 49.7
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 1.9e-114 417.2 467 52.5
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 1.6e-113 414.1 540 52.6
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 1.6e-113 414.1 518 52.9
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 6.1e-113 412.1 519 52.6
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 5.2e-112 409.1 527 53.1
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 7.5e-111 405.2 531 54.6
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 9.8e-111 404.8 516 52.1
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 2.2e-110 403.7 540 46.7
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 6.3e-110 402.1 539 49.5
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 1.1e-109 401.4 478 52.5
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 1.6e-108 397.5 473 55.2
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 1.6e-108 397.5 533 47.3
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 4.5e-108 396.0 516 49.4
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 5.9e-108 395.6 505 48.3
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 1.3e-107 394.4 516 49.0
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 1.7e-107 394.0 357 59.1
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 4.2e-106 389.4 511 47.6
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 7.2e-106 388.7 507 46.5
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 9.5e-106 388.3 512 50.0
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 2.1e-105 387.1 520 50.6
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 4.7e-105 386.0 529 50.1
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 5.2e-104 382.5 520 50.2
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 7.5e-103 378.6 505 47.7
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 6.3e-102 375.6 512 47.5
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.4e-101 374.4 526 47.9
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 1.8e-101 374.0 465 50.8
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 2.7e-100 370.2 529 45.2
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 2.7e-100 370.2 525 47.6
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 4.5e-100 369.4 507 47.5
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 1.7e-99 367.5 511 47.4
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 6.6e-99 365.5 366 56.0
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 8.6e-99 365.2 471 48.0
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 1.5e-98 364.4 506 47.6
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 2.5e-98 363.6 526 44.1
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 7.3e-98 362.1 524 46.0
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 2.8e-97 360.1 522 43.5
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 2.8e-97 360.1 475 47.4
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 3.6e-97 359.8 469 48.0
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 4.7e-97 359.4 454 50.2
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 2.3e-96 357.1 504 44.0
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 2.3e-96 357.1 469 48.2
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 5.2e-96 355.9 513 46.0
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 1.5e-95 354.4 461 49.5
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 1.7e-94 350.9 450 49.3
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 5.4e-93 345.9 519 46.6
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 5.4e-93 345.9 519 46.6
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 5.4e-93 345.9 519 46.6
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 1.3e-91 341.3 478 45.6
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 1.2e-89 334.7 430 47.0
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 4.7e-89 332.8 375 49.9
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 6.2e-89 332.4 483 44.5
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 6.2e-89 332.4 356 54.2
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 8.0e-89 332.0 466 44.8
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 2.3e-88 330.5 454 46.9
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 8.9e-88 328.6 523 43.2
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 4.4e-87 326.2 375 51.5
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 2.2e-86 323.9 377 48.0
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 4.9e-86 322.8 401 49.9
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 1.1e-85 321.6 522 43.1
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 2.4e-85 320.5 427 47.3
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 4.1e-85 319.7 519 41.8
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 4.1e-85 319.7 519 41.8
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 5.4e-85 319.3 422 46.4
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 2.0e-84 317.4 454 44.5
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 2.0e-84 317.4 451 43.2
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 2.0e-84 317.4 451 43.2
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 2.0e-84 317.4 451 43.2
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 2.0e-84 317.4 375 50.9
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 2.7e-84 317.0 462 45.0
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 7.8e-84 315.5 371 50.1
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 3.9e-83 313.2 516 42.4
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 4.3e-82 309.7 457 44.2
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 5.6e-82 309.3 368 49.7
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 7.3e-82 308.9 367 49.6
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 6.8e-80 302.4 350 51.7
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 6.8e-80 302.4 313 52.7
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 5.8e-79 299.3 434 44.9
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 2.2e-78 297.4 368 47.3
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 6.4e-78 295.8 399 45.6
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 3.2e-77 293.5 392 45.7
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 9.2e-77 292.0 435 42.5
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 1.6e-76 291.2 364 49.2
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 7.8e-76 288.9 460 41.7
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 7.8e-76 288.9 453 42.2
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 1.3e-75 288.1 336 50.6
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 5.1e-75 286.2 511 37.6
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 3.3e-74 283.5 403 43.7
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 7.3e-74 282.3 313 52.4
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 1.2e-73 281.6 538 42.6
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 3.1e-72 276.9 508 40.4
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 4.1e-69 266.5 312 48.7
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.7e-67 261.2 385 42.3
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.2e-65 255.0 368 51.6
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 1.5e-63 248.1 340 45.6
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 3.8e-62 243.4 225 59.6
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 1.6e-60 238.0 388 40.2
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 7.3e-58 229.2 296 44.9
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 9.6e-58 228.8 398 36.4
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.3e-54 218.4 550 32.0
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.3e-54 218.4 550 32.0
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 2.3e-43 181.0 501 29.1
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.2e-39 168.7 183 49.7
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 3.4e-39 167.2 183 49.7
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.9e-35 153.7 391 29.4
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 8.7e-35 152.5 425 30.4
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.1e-34 152.1 329 33.7
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 7.4e-34 149.4 220 38.2
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 7.4e-34 149.4 335 31.9
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 5.3e-32 143.3 171 49.7
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 5.9e-31 139.8 346 29.8
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 8.5e-30 136.0 124 53.2
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 7.2e-29 132.9 293 32.8
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 1.6e-28 131.7 329 28.0
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 3.9e-27 127.1 592 23.5
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 3.3e-26 124.0 479 24.6
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.0e-22 112.5 228 29.8
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 2.1e-20 104.8 147 46.9
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 8.8e-19 99.4 134 39.6
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 7.7e-15 86.3 121 39.7
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 3.8e-14 84.0 80 50.0
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 2.1e-12 78.2 127 43.3


User provided reference genes

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