Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.1076 Acer truncatum HOM05D002495 ORTHO05D002704 7.3e-31 137.1 100 100.0
Ciclev10005558m.g Citrus clementina HOM05D002495 ORTHO05D002704 9.9e-20 100.1 100 79.0
MD14G1070700 Malus domestica HOM05D002495 ORTHO05D002704 7.1e-18 94.0 64 73.4
Gohir.D09G120000 Gossypium hirsutum HOM05D002495 ORTHO05D002704 4.6e-17 91.3 68 73.5
Gorai.006G137400 Gossypium raimondii HOM05D002495 ORTHO05D002704 4.6e-17 91.3 68 73.5
Gohir.A09G123000 Gossypium hirsutum HOM05D002495 ORTHO05D002704 1.8e-16 89.4 70 70.0
QL07p000156 Quercus lobata HOM05D002495 ORTHO05D002704 1.8e-16 89.4 66 71.2
MD12G1077300 Malus domestica HOM05D002495 ORTHO05D002704 3.9e-16 88.2 70 65.7
Haze_19874 Corylus avellana HOM05D002495 ORTHO05D002704 2.5e-15 85.5 59 74.6
Cfa016829 Carpinus fangiana HOM05D002495 ORTHO05D002704 7.4e-15 84.0 59 72.9
TWI53G0361 Tripterygium wilfordii HOM05D002495 ORTHO05D002704 9.6e-15 83.6 102 70.6
Actinidia38550 Actinidia chinensis HOM05D002495 ORTHO05D002704 2.8e-14 82.0 67 64.2
CiPaw.10G032700 Carya illinoinensis HOM05D002495 ORTHO05D002704 4.8e-14 81.3 66 62.1
Duzib106G0084 Durio zibethinus HOM05D002495 ORTHO05D002704 6.2e-14 80.9 72 65.3
Prupe.7G063400 Prunus persica HOM05D002495 ORTHO05D002704 1.4e-13 79.7 63 60.3
Prupe.7G063600 Prunus persica HOM05D002495 ORTHO05D002704 1.8e-13 79.3 66 59.1
Thecc.05G157900 Theobroma cacao HOM05D002495 ORTHO05D002704 3.1e-13 78.6 69 65.2
Eucgr.A02369 Eucalyptus grandis HOM05D002495 ORTHO05D002704 4.0e-13 78.2 72 61.1
Lj5g0022145 Lotus japonicus HOM05D002495 ORTHO05D002704 5.3e-13 77.8 69 58.0
Sabra06G0036700 Salix brachista HOM05D002495 ORTHO05D002704 5.3e-13 77.8 65 60.0
Potri.006G052200 Populus trichocarpa HOM05D002495 ORTHO05D002704 6.9e-13 77.4 65 60.0
PGR004G1925 Punica granatum HOM05D002495 ORTHO05D002704 1.2e-12 76.6 66 53.0
Dinv18056 Davidia involucrata HOM05D002495 ORTHO05D002704 1.5e-12 76.3 60 63.3
CANSAT80G1048 Cannabis sativa HOM05D002495 ORTHO05D002704 2.0e-12 75.9 58 63.8
COL.COLO4_28238 Corchorus olitorius HOM05D002495 ORTHO05D002704 2.0e-12 75.9 72 61.1
Cpa.g.sc92.40 Carica papaya HOM05D002495 ORTHO05D002704 2.6e-12 75.5 66 57.6
FAN09G0252 Fragaria x ananassa HOM05D002495 ORTHO05D002704 2.6e-12 75.5 66 56.1
CiPaw.09G037300 Carya illinoinensis HOM05D002495 ORTHO05D002704 4.5e-12 74.7 60 68.3
Nn2g15289 Nelumbo nucifera HOM05D002495 ORTHO05D002704 4.5e-12 74.7 101 65.3
Manes.09G023500 Manihot esculenta HOM05D002495 ORTHO05D002704 7.6e-12 73.9 66 60.6
TWI74G0436 Tripterygium wilfordii HOM05D002495 ORTHO05D002704 1.0e-11 73.6 102 66.7
RcHm_v2.0_Chr3g0481751 Rosa chinensis HOM05D002495 ORTHO05D002704 1.7e-11 72.8 66 56.1
FvH4_6g23600 Fragaria vesca HOM05D002495 ORTHO05D002704 2.2e-11 72.4 66 54.5
FAN02G4466 Fragaria x ananassa HOM05D002495 ORTHO05D002704 2.2e-11 72.4 66 54.5
FAN14G1577 Fragaria x ananassa HOM05D002495 ORTHO05D002704 2.2e-11 72.4 66 54.5
CSS0019301 Camellia sinensis var. sinensis HOM05D002495 ORTHO05D002704 3.8e-11 71.6 61 62.3
arahy.Tifrunner.gnm1.ann1.UBVB2N Arachis hypogaea HOM05D002495 ORTHO05D002704 4.9e-11 71.2 62 54.8
FAN05G0523 Fragaria x ananassa HOM05D002495 ORTHO05D002704 6.5e-11 70.9 66 53.0
Lalb_Chr25g0287341 Lupinus albus HOM05D002495 ORTHO05D002704 6.5e-11 70.9 65 50.8
BraA04t18639Z Brassica rapa HOM05D002495 ORTHO05D002704 8.4e-11 70.5 62 58.1
Duzib093G1573 Durio zibethinus HOM05D002495 ORTHO05D002704 8.4e-11 70.5 69 60.9
EL10Ac3g07076 Beta vulgaris HOM05D002495 ORTHO05D002704 1.1e-10 70.1 67 55.2
BcaB06g29206 Brassica carinata HOM05D002495 ORTHO05D002704 1.4e-10 69.7 62 58.1
Glyma.03G137500 Glycine max HOM05D002495 ORTHO05D002704 1.9e-10 69.3 69 55.1
TAR633G2487 Trochodendron aralioides HOM05D002495 ORTHO05D002704 1.9e-10 69.3 101 68.3
arahy.Tifrunner.gnm1.ann1.FK7XM9 Arachis hypogaea HOM05D002495 ORTHO05D002704 2.5e-10 68.9 62 53.2
C04p69220 Brassica napus HOM05D002495 ORTHO05D002704 2.5e-10 68.9 63 55.6
Nn7g36245 Nelumbo nucifera HOM05D002495 ORTHO05D002704 3.2e-10 68.6 66 54.5
Rhsim04G0102000 Rhododendron simsii HOM05D002495 ORTHO05D002704 5.5e-10 67.8 67 53.7
Gohir.A01G196800 Gossypium hirsutum HOM05D002495 ORTHO05D002704 7.1e-10 67.4 100 59.0
BolC4t28421H Brassica oleracea HOM05D002495 ORTHO05D002704 9.3e-10 67.0 62 56.5
Lj1g0006947 Lotus japonicus HOM05D002495 ORTHO05D002704 9.3e-10 67.0 66 47.0
AL4G40160 Arabidopsis lyrata HOM05D002495 ORTHO05D002704 1.2e-09 66.6 69 55.1
A04p31810 Brassica napus HOM05D002495 ORTHO05D002704 1.2e-09 66.6 62 56.5
Peaxi162Scf00354g00112 Petunia axillaris HOM05D002495 ORTHO05D002704 1.6e-09 66.2 63 58.7
Hma1.2p1_0247F.1_g101810 Hydrangea macrophylla HOM05D002495 ORTHO05D002704 2.1e-09 65.9 72 50.0
Psat6g086360 Pisum sativum HOM05D002495 ORTHO05D002704 2.1e-09 65.9 100 64.0
Gohir.D01G187000 Gossypium hirsutum HOM05D002495 ORTHO05D002704 2.7e-09 65.5 100 59.0
Gorai.002G230400 Gossypium raimondii HOM05D002495 ORTHO05D002704 2.7e-09 65.5 100 59.0
CARHR136920 Cardamine hirsuta HOM05D002495 ORTHO05D002704 4.6e-09 64.7 69 52.2
Carub.0004s2411 Capsella rubella HOM05D002495 ORTHO05D002704 7.9e-09 63.9 69 49.3
Ca_12121_v3 Cicer arietinum L. HOM05D002495 ORTHO05D002704 7.9e-09 63.9 100 63.0
Glyma.19G140400 Glycine max HOM05D002495 ORTHO05D002704 7.9e-09 63.9 69 52.2
AT2G41835 Arabidopsis thaliana HOM05D002495 ORTHO05D002704 1.0e-08 63.5 62 53.2
Aqoxy1G00287 Aquilegia oxysepala HOM05D002495 ORTHO05D002704 1.3e-08 63.2 54 61.1
vmacro09081 Vaccinium macrocarpon HOM05D002495 ORTHO05D002704 1.8e-08 62.8 67 53.7
Hund24713 Selenicereus undatus HOM05D002495 ORTHO05D002704 2.3e-08 62.4 66 53.0
Glyma.02G183100 Glycine max HOM05D002495 ORTHO05D002704 3.0e-08 62.0 57 54.4
Glyma.10G103400 Glycine max HOM05D002495 ORTHO05D002704 3.0e-08 62.0 57 54.4
Nitab4.5_0010347g0030 Nicotiana tabacum HOM05D002495 ORTHO05D002704 3.0e-08 62.0 59 50.8
Sed0027679 Sechium edule HOM05D002495 ORTHO05D002704 3.9e-08 61.6 64 51.6
Thhalv10017048m.g Eutrema salsugineum HOM05D002495 ORTHO05D002704 5.1e-08 61.2 69 50.7
Sp4g24100 Schrenkiella parvula HOM05D002495 ORTHO05D002704 6.7e-08 60.8 69 49.3
Lju124C38T4 Lonicera japonica HOM05D002495 ORTHO05D002704 8.7e-08 60.5 71 50.7
VMungo0720G2988 Vigna mungo HOM05D002495 ORTHO05D002704 8.7e-08 60.5 64 50.0
THA.LOC104802142 Tarenaya hassleriana HOM05D002495 ORTHO05D002704 1.1e-07 60.1 63 52.4
MBI04_g41602_MAGBIO Magnolia biondii HOM05D002495 ORTHO05D002704 1.5e-07 59.7 57 61.4
Nitab4.5_0001509g0030 Nicotiana tabacum HOM05D002495 ORTHO05D002704 1.5e-07 59.7 58 48.3
SalBow6G5699 Salvia bowleyana HOM05D002495 ORTHO05D002704 1.9e-07 59.3 58 51.7
Medtr0100s0160 Medicago truncatula HOM05D002495 ORTHO05D002704 2.5e-07 58.9 58 55.2
AUR62024434 Chenopodium quinoa HOM05D002495 ORTHO05D002704 3.3e-07 58.5 66 45.5
MELO3C023120.2 Cucumis melo HOM05D002495 ORTHO05D002704 3.3e-07 58.5 62 51.6
TPR.G10619 Trifolium pratense HOM05D002495 ORTHO05D002704 3.3e-07 58.5 59 52.5
CsaV3_4G011780 Cucumis sativus L. HOM05D002495 ORTHO05D002704 4.3e-07 58.2 62 50.0
DCAR_009058 Daucus carota HOM05D002495 ORTHO05D002704 7.4e-07 57.4 65 41.5
Oeu017949.1 Olea europaea HOM05D002495 ORTHO05D002704 1.3e-06 56.6 62 56.5
Peaxi162Scf00493g00220 Petunia axillaris HOM05D002495 ORTHO05D002704 1.6e-06 56.2 60 51.7
Phvul.007G253000 Phaseolus vulgaris HOM05D002495 ORTHO05D002704 1.6e-06 56.2 64 48.4
VMungo1383G0394 Vigna mungo HOM05D002495 ORTHO05D002704 2.1e-06 55.8 67 43.3
Hund19154 Selenicereus undatus HOM05D002167 ORTHO05D002342 2.8e-06 55.5 61 47.5
Os07g0569700 Oryza sativa ssp. japonica HOM05D002495 ORTHO05D002704 3.7e-06 55.1 63 52.4
Zm00001eb324750 Zea mays HOM05D002495 ORTHO05D002704 6.2e-06 54.3 69 46.4


User provided reference genes

Program Settings