Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 9.4e-111 404.1 294 100.0
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 6.0e-49 198.7 203 65.0
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 6.5e-43 178.7 200 60.5
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 1.1e-42 177.9 200 57.5
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 2.1e-41 173.7 205 57.6
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 1.0e-40 171.4 200 57.5
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 8.7e-40 168.3 202 54.5
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 8.7e-40 168.3 202 54.5
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 4.3e-39 166.0 212 55.2
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 1.4e-37 161.0 202 55.4
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 4.1e-37 159.5 216 52.8
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 5.3e-37 159.1 214 52.3
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 5.3e-37 159.1 214 52.3
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 9.0e-37 158.3 208 54.3
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 9.0e-37 158.3 201 54.2
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 9.0e-37 158.3 201 54.2
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 9.0e-37 158.3 207 56.5
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 1.2e-36 157.9 201 54.2
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.2e-36 157.9 216 51.4
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.5e-36 157.5 216 50.9
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 2.6e-36 156.8 184 59.8
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 4.5e-36 156.0 184 58.7
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 7.6e-36 155.2 216 50.0
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 1.0e-35 154.8 194 56.7
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 2.9e-35 153.3 202 53.0
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 3.8e-35 152.9 202 52.5
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 7.2e-34 148.7 209 50.2
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 1.2e-33 147.9 186 52.7
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 2.1e-33 147.1 192 54.2
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 2.7e-33 146.7 204 50.5
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 2.7e-33 146.7 197 52.8
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 3.6e-33 146.4 189 52.4
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 6.1e-33 145.6 206 50.0
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 6.1e-33 145.6 201 55.7
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 7.9e-33 145.2 205 51.7
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 7.9e-33 145.2 184 57.6
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.0e-32 144.8 203 53.2
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 1.3e-32 144.4 200 51.0
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 1.8e-32 144.1 184 52.2
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 3.9e-32 142.9 199 48.7
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 6.7e-32 142.1 185 53.5
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 8.7e-32 141.7 187 52.9
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 1.1e-31 141.4 198 51.5
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.1e-31 141.4 202 55.4
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 1.5e-31 141.0 181 59.1
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 1.5e-31 141.0 193 51.3
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.5e-31 141.0 181 50.8
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.5e-31 141.0 182 54.4
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 1.5e-31 141.0 203 50.7
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.9e-31 140.6 213 50.2
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 2.5e-31 140.2 204 48.5
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 2.5e-31 140.2 186 52.7
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 3.3e-31 139.8 199 53.3
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 9.7e-31 138.3 209 50.7
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 1.3e-30 137.9 193 51.3
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 3.7e-30 136.3 213 49.8
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 3.7e-30 136.3 213 49.8
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 3.7e-30 136.3 195 50.8
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 3.7e-30 136.3 206 51.5
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 4.8e-30 136.0 221 49.3
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 1.4e-29 134.4 195 54.9
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 2.4e-29 133.7 210 49.0
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 2.4e-29 133.7 192 55.7
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 1.2e-28 131.3 206 50.0
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 2.0e-28 130.6 210 46.2
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 2.0e-28 130.6 202 49.0
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 2.6e-28 130.2 213 48.8
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 3.4e-28 129.8 187 53.5
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 4.5e-28 129.4 214 43.5
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 5.9e-28 129.0 187 49.2
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 7.7e-28 128.6 203 51.2
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 2.2e-27 127.1 202 47.0
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 5.0e-27 125.9 199 49.2
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 8.5e-27 125.2 157 56.1
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 8.5e-27 125.2 201 47.8
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 8.5e-27 125.2 200 48.0
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 1.1e-26 124.8 203 48.8
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 1.1e-26 124.8 170 50.0
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 2.5e-26 123.6 178 51.7
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 2.5e-26 123.6 196 49.0
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 3.2e-26 123.2 182 56.0
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 3.2e-26 123.2 199 44.7
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 4.2e-26 122.9 205 46.8
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 7.2e-26 122.1 209 48.8
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.2e-25 121.3 199 49.2
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 1.2e-25 121.3 192 45.8
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 1.2e-25 121.3 243 44.9
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 1.6e-25 120.9 185 51.4
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 3.6e-25 119.8 224 45.5
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 7.9e-25 118.6 176 52.3
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 1.4e-24 117.9 186 45.7
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 1.4e-24 117.9 198 49.5
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 1.4e-24 117.9 237 44.3
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 1.8e-24 117.5 195 45.1
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 1.8e-24 117.5 204 48.0
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 2.3e-24 117.1 243 40.7
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 2.3e-24 117.1 178 52.8
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 3.0e-24 116.7 194 45.9
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 5.1e-24 115.9 195 45.1
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 1.1e-23 114.8 208 43.3
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 1.1e-23 114.8 200 47.5
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 2.0e-23 114.0 151 49.7
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 7.4e-23 112.1 198 43.9
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 7.4e-23 112.1 184 45.1
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 7.4e-23 112.1 184 45.1
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 1.3e-22 111.3 176 46.0
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 1.3e-22 111.3 202 46.0
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 2.2e-22 110.5 206 41.7
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 2.2e-22 110.5 206 41.7
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 2.2e-22 110.5 206 41.7
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 3.7e-22 109.8 188 44.7
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 4.8e-22 109.4 188 47.3
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 6.3e-22 109.0 205 42.4
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 6.3e-22 109.0 197 42.6
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 6.3e-22 109.0 197 42.6
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 6.3e-22 109.0 199 42.2
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 6.3e-22 109.0 185 45.4
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 8.2e-22 108.6 199 42.2
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 1.1e-21 108.2 197 42.6
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 1.1e-21 108.2 211 40.3
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 1.4e-21 107.8 197 42.6
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 1.8e-21 107.5 213 43.2
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 1.8e-21 107.5 197 46.2
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 2.4e-21 107.1 134 58.2
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 4.1e-21 106.3 207 39.6
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 4.1e-21 106.3 200 44.5
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 6.9e-21 105.5 205 41.5
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 1.2e-20 104.8 196 42.9
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.5e-20 104.4 187 44.4
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 2.0e-20 104.0 222 45.5
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 2.6e-20 103.6 193 40.9
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 3.4e-20 103.2 208 43.3
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 4.5e-20 102.8 175 46.3
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 4.5e-20 102.8 217 41.0
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 4.5e-20 102.8 188 47.3
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 5.9e-20 102.4 209 42.1
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 1.0e-19 101.7 205 41.0
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 1.0e-19 101.7 212 42.5
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 1.7e-19 100.9 203 39.4
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 5.0e-19 99.4 206 41.3
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 8.5e-19 98.6 191 41.4
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 8.5e-19 98.6 180 42.2
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 2.5e-18 97.1 199 42.7
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 9.4e-18 95.1 208 39.4
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 9.4e-18 95.1 188 40.4
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 3.6e-17 93.2 179 41.9
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 4.7e-17 92.8 128 50.0
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 7.9e-17 92.0 201 42.3
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 1.4e-16 91.3 192 40.6
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 3.0e-16 90.1 190 41.6
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 1.5e-15 87.8 223 36.3
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.5e-15 87.8 176 40.9
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 2.6e-15 87.0 128 48.4
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 5.7e-15 85.9 133 53.4
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.2e-12 78.2 80 63.8
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 1.3e-11 74.7 209 33.5
HanXRQChr05g0132091 Helianthus annuus HOM05D004060 ORTHO05D004967 1.5e-10 71.2 171 34.5
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 4.2e-10 69.7 127 44.1
AUR62024421 Chenopodium quinoa HOM05D004060 ORTHO05D004967 3.6e-09 66.6 81 51.9
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 3.6e-09 66.6 190 35.8
AUR62026012 Chenopodium quinoa HOM05D004060 ORTHO05D004967 6.1e-09 65.9 81 50.6
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 5.2e-08 62.8 36 86.1
Oeu056892.1 Olea europaea HOM05D004060 ORTHO05D004967 1.5e-07 61.2 66 57.6
HPP92_019616 Vanilla planifolia HOM05D004060 ORTHO05D004967 1.7e-06 57.8 65 53.8
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 2.8e-06 57.0 169 30.2


User provided reference genes

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