Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.1039 Acer truncatum HOM05D002505 ORTHO05D006559 3.3e-219 765.0 454 100.0
Atru.chr3.1220 Acer truncatum HOM05D002505 ORTHO05D006559 1.9e-198 696.0 453 90.7
Nn4g25029 Nelumbo nucifera HOM05D002505 ORTHO05D006559 3.7e-106 389.4 500 54.2
TWI59G0446 Tripterygium wilfordii HOM05D002505 ORTHO05D006559 1.4e-105 387.5 495 54.3
CSS0039073 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 4.1e-105 386.0 416 58.9
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 1.3e-103 380.9 448 55.8
TAR626G1844 Trochodendron aralioides HOM05D002505 ORTHO05D006559 1.3e-103 380.9 492 53.5
Cpa.g.sc77.87 Carica papaya HOM05D002505 ORTHO05D006559 5.0e-103 379.0 480 57.5
Gorai.013G241700 Gossypium raimondii HOM05D002505 ORTHO05D006559 1.5e-99 367.5 506 54.5
Gohir.D13G211600 Gossypium hirsutum HOM05D002505 ORTHO05D006559 2.6e-99 366.7 508 54.1
Duzib168G0650 Durio zibethinus HOM05D002505 ORTHO05D006559 3.7e-98 362.8 495 54.9
Potri.015G137000 Populus trichocarpa HOM05D002505 ORTHO05D006559 1.4e-97 360.9 488 54.3
CSS0016681 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 1.9e-97 360.5 421 56.3
Gohir.A13G207000 Gossypium hirsutum HOM05D002505 ORTHO05D006559 2.4e-97 360.1 510 54.7
CiPaw.15G113000 Carya illinoinensis HOM05D002505 ORTHO05D006559 5.4e-97 359.0 390 58.7
Sopen01g041610 Solanum pennellii HOM05D002505 ORTHO05D006559 5.4e-97 359.0 411 57.7
Prupe.4G127000 Prunus persica HOM05D002505 ORTHO05D006559 2.0e-96 357.1 477 53.9
Solyc01g098030.4 Solanum lycopersicum HOM05D002505 ORTHO05D006559 4.6e-96 355.9 404 58.7
MD05G1239100 Malus domestica HOM05D002505 ORTHO05D006559 1.0e-95 354.8 488 54.9
Rhsim09G0088500 Rhododendron simsii HOM05D002505 ORTHO05D006559 6.6e-95 352.1 449 52.3
Actinidia12750 Actinidia chinensis HOM05D002505 ORTHO05D006559 1.1e-94 351.3 411 53.5
CsaV3_4G007590 Cucumis sativus L. HOM05D002505 ORTHO05D006559 1.2e-93 347.8 495 54.1
Nitab4.5_0002840g0110 Nicotiana tabacum HOM05D002505 ORTHO05D006559 1.6e-93 347.4 380 60.5
ClCG07G010710 Citrullus lanatus HOM05D002505 ORTHO05D006559 1.1e-92 344.7 500 50.6
PGSC0003DMG400022499 Solanum tuberosum HOM05D002505 ORTHO05D006559 1.8e-92 344.0 412 57.0
MELO3C016182.2 Cucumis melo HOM05D002505 ORTHO05D006559 5.2e-92 342.4 449 54.3
vmacro00789 Vaccinium macrocarpon HOM05D002505 ORTHO05D006559 3.4e-91 339.7 453 49.2
Ciclev10019766m.g Citrus clementina HOM05D002505 ORTHO05D006559 7.5e-91 338.6 514 52.5
Thecc.09G195000 Theobroma cacao HOM05D002505 ORTHO05D006559 7.5e-91 338.6 318 65.4
MD10G1217100 Malus domestica HOM05D002505 ORTHO05D006559 1.3e-90 337.8 413 55.4
FAN25G1470 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.7e-90 337.4 477 54.5
MSTRG.14571 Avicennia marina HOM05D002505 ORTHO05D006559 3.7e-90 336.3 417 53.0
Cc05_g16590 Coffea canephora HOM05D002505 ORTHO05D006559 3.7e-90 336.3 382 61.3
Peaxi162Scf00225g00129 Petunia axillaris HOM05D002505 ORTHO05D006559 8.3e-90 335.1 329 63.8
CAN.G134.186 Capsicum annuum HOM05D002505 ORTHO05D006559 1.1e-89 334.7 351 63.0
Nitab4.5_0002361g0170 Nicotiana tabacum HOM05D002505 ORTHO05D006559 1.1e-89 334.7 334 65.9
Eucgr.D02598 Eucalyptus grandis HOM05D002505 ORTHO05D006559 1.4e-89 334.3 497 49.5
Lj6g0017559 Lotus japonicus HOM05D002505 ORTHO05D006559 1.9e-89 334.0 527 46.1
Manes.08G161700 Manihot esculenta HOM05D002505 ORTHO05D006559 9.2e-89 331.6 482 54.6
Oeu019749.1 Olea europaea HOM05D002505 ORTHO05D006559 9.2e-89 331.6 423 51.3
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea HOM05D002505 ORTHO05D006559 2.7e-88 330.1 528 47.7
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea HOM05D002505 ORTHO05D006559 4.6e-88 329.3 529 48.2
Sed0021026 Sechium edule HOM05D002505 ORTHO05D006559 1.3e-87 327.8 497 49.3
Sc18g0006950 Simmondsia chinensis HOM05D002505 ORTHO05D006559 1.3e-87 327.8 448 50.0
FAN16G0440 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.9e-86 323.9 498 50.8
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea HOM05D002505 ORTHO05D006559 2.5e-86 323.6 524 46.6
FAN21G2970 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.2e-85 321.2 500 51.2
Glyma.09G030100 Glycine max HOM05D002505 ORTHO05D006559 3.6e-85 319.7 501 49.1
Sabra15G0148600 Salix brachista HOM05D002505 ORTHO05D006559 4.0e-84 316.2 485 48.7
FAN11G2806 Fragaria x ananassa HOM05D002505 ORTHO05D006559 2.0e-83 313.9 503 46.9
Phvul.006G073200 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 3.4e-83 313.2 511 45.6
GSVIVG01031552001 Vitis vinifera HOM05D002505 ORTHO05D006559 7.5e-83 312.0 195 76.4
FvH4_3g14000 Fragaria vesca HOM05D002505 ORTHO05D006559 3.7e-82 309.7 489 49.5
PGR102G1955 Punica granatum HOM05D002505 ORTHO05D006559 3.7e-82 309.7 431 46.6
RcHm_v2.0_Chr5g0023231 Rosa chinensis HOM05D002505 ORTHO05D006559 4.1e-81 306.2 472 54.0
Ca_18602_v3 Cicer arietinum L. HOM05D002505 ORTHO05D006559 5.4e-81 305.8 520 46.5
Phvul.006G122700 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 2.7e-80 303.5 328 58.2
CANSAT21G0880 Cannabis sativa HOM05D002505 ORTHO05D006559 6.0e-80 302.4 448 51.8
VMungo0540G1128 Vigna mungo HOM05D002505 ORTHO05D006559 7.8e-80 302.0 328 56.7
SHI32899 Sapria himalayana HOM05D002505 ORTHO05D006559 1.0e-79 301.6 423 45.6
Migut.H01653 Erythranthe guttata HOM05D002505 ORTHO05D006559 3.9e-79 299.7 418 52.2
EL10Ac5g10510 Beta vulgaris HOM05D002505 ORTHO05D006559 8.6e-79 298.5 469 43.3
Rhsim06G0244600 Rhododendron simsii HOM05D002505 ORTHO05D006559 8.6e-79 298.5 487 48.9
Carub.0001s4291 Capsella rubella HOM05D002505 ORTHO05D006559 2.5e-78 297.0 554 44.6
AUR62011379 Chenopodium quinoa HOM05D002505 ORTHO05D006559 7.3e-78 295.4 509 45.4
BraA06t23318Z Brassica rapa HOM05D001023 ORTHO05D006559 1.2e-77 294.7 508 45.3
CARHR043910 Cardamine hirsuta HOM05D002505 ORTHO05D006559 4.7e-77 292.7 546 43.4
VMungo1309G1878 Vigna mungo HOM05D002505 ORTHO05D006559 1.1e-76 291.6 328 57.0
Hund09330 Selenicereus undatus HOM05D002505 ORTHO05D006559 4.0e-76 289.7 433 52.2
SGA_v2.0_scaffold49G18207 Striga asiatica HOM05D002505 ORTHO05D006559 4.0e-76 289.7 424 47.9
ECA246G4077 Erigeron canadensis HOM05D002505 ORTHO05D006559 3.4e-75 286.6 449 45.7
Medtr8g078230 Medicago truncatula HOM05D002505 ORTHO05D006559 5.8e-75 285.8 193 72.5
HPP92_002279 Vanilla planifolia HOM05D002505 ORTHO05D006559 7.6e-75 285.4 388 47.2
PSO170G3666 Papaver somniferum HOM05D002505 ORTHO05D006559 5.4e-73 279.3 458 45.4
BcaB02g10898 Brassica carinata HOM05D002505 ORTHO05D006559 1.2e-72 278.1 475 45.9
Ah.09g227860 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.6e-72 277.7 515 41.0
Lsat_1_v5_gn_5_3041 Lactuca sativa HOM05D002505 ORTHO05D006559 1.6e-72 277.7 421 49.6
CDE05G0972 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 2.1e-72 277.3 433 44.8
A06p00890 Brassica napus HOM05D001023 ORTHO05D006559 6.0e-72 275.8 548 41.6
AL1G62310 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 7.8e-72 275.4 192 67.7
Aqoxy1G00117 Aquilegia oxysepala HOM05D002505 ORTHO05D006559 1.0e-71 275.0 519 42.0
DCAR_009664 Daucus carota HOM05D002505 ORTHO05D006559 1.0e-71 275.0 443 49.7
THA.LOC104822601 Tarenaya hassleriana HOM05D002505 ORTHO05D006559 1.0e-71 275.0 192 68.2
BcaB07g33312 Brassica carinata HOM05D002505 ORTHO05D006559 1.3e-71 274.6 192 67.2
AUR62016680 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.3e-71 274.6 474 48.3
HanXRQChr05g0159341 Helianthus annuus HOM05D002505 ORTHO05D006559 1.3e-71 274.6 302 55.6
AT1G53645 Arabidopsis thaliana HOM05D002505 ORTHO05D006559 1.7e-71 274.2 329 54.4
PSO017G2893 Papaver somniferum HOM05D002505 ORTHO05D006559 2.3e-71 273.9 460 45.0
Lj1C206G15 Lonicera japonica HOM05D002505 ORTHO05D006559 3.9e-71 273.1 381 45.7
Aa31LG10G1650 Aethionema arabicum HOM05D002505 ORTHO05D006559 6.6e-71 272.3 191 66.5
Lalb_Chr20g0120281 Lupinus albus HOM05D002505 ORTHO05D006559 6.6e-71 272.3 495 44.0
AUR62002958 Chenopodium quinoa HOM05D002505 ORTHO05D006559 8.7e-71 271.9 412 43.0
BcaC08g43545 Brassica carinata HOM05D002505 ORTHO05D006559 1.1e-70 271.6 498 46.2
Sp1g40180 Schrenkiella parvula HOM05D002505 ORTHO05D006559 1.5e-70 271.2 418 48.8
AUR62007763 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.9e-70 270.8 412 43.2
C06p09440 Brassica napus HOM05D001023 ORTHO05D006559 2.5e-70 270.4 514 43.0
BolC6t36013H Brassica oleracea HOM05D001023 ORTHO05D006559 3.3e-70 270.0 498 46.2
Thhalv10011382m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 5.6e-70 269.2 543 42.0
ATR0057G033 Amborella trichopoda HOM05D002505 ORTHO05D006559 9.6e-70 268.5 391 45.3
CDE02G1608 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 1.8e-68 264.2 346 48.0
unitig_21.g20249 Utricularia gibba HOM05D002505 ORTHO05D006559 3.5e-64 250.0 192 62.5
Zm00001eb060430 Zea mays HOM05D002505 ORTHO05D006559 4.6e-64 249.6 439 38.7
Psat4g091000 Pisum sativum HOM05D002505 ORTHO05D006559 2.1e-61 240.7 298 53.4
Dinv17234 Davidia involucrata HOM05D002505 ORTHO05D006559 6.2e-61 239.2 359 48.7
BolC6t36693H Brassica oleracea HOM05D002505 ORTHO05D006559 1.5e-59 234.6 165 67.3
Os06g0664400 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D006559 2.6e-59 233.8 421 41.6
C06p15180 Brassica napus HOM05D002505 ORTHO05D006559 1.4e-52 211.5 140 71.4
Haze_18498 Corylus avellana HOM05D002505 ORTHO05D006559 2.9e-50 203.8 306 54.9
A05p18000 Brassica napus HOM05D002505 ORTHO05D006559 3.8e-50 203.4 177 57.6
BraA05t20694Z Brassica rapa HOM05D002505 ORTHO05D006559 3.8e-50 203.4 177 57.6
QL04p094522 Quercus lobata HOM05D002505 ORTHO05D000632 1.4e-49 201.4 598 35.5
BcaC08g44112 Brassica carinata HOM05D002505 ORTHO05D006559 6.0e-40 169.5 139 61.2
Thhalv10012156m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 1.3e-39 168.3 107 73.8
CSS0015020 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 8.2e-37 159.1 281 49.5
Glyma.15G135900 Glycine max HOM05D002505 ORTHO05D006559 9.4e-33 145.6 112 64.3
Dinv29488 Davidia involucrata HOM05D002505 ORTHO05D006559 2.1e-32 144.4 90 74.4
Ah.07g202770 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.4e-28 131.7 91 70.3
Ah.13g066500 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.2e-27 128.6 415 33.0
Mapoly0043s0004 Marchantia polymorpha HOM05D002505 ORTHO05D006559 1.0e-23 115.5 176 32.4
Pp3c12_26140 Physcomitrium patens HOM05D002505 ORTHO05D006559 2.6e-22 110.9 164 36.6
AagrBONN_evm.TU.Sc2ySwM_228.276 Anthoceros agrestis HOM05D002505 ORTHO05D006559 6.3e-21 106.3 148 34.5
Actinidia26206 Actinidia chinensis HOM05D002505 ORTHO05D006559 1.2e-19 102.1 64 73.4
QL04p094482 Quercus lobata HOM05D000280 ORTHO05D006559 1.1e-17 95.5 63 74.6
Haze_18499 Corylus avellana HOM05D002505 ORTHO05D006559 4.2e-17 93.6 62 74.2
RcHm_v2.0_Chr5g0023281 Rosa chinensis HOM05D002505 ORTHO05D006559 9.4e-17 92.4 62 74.2
Ah.13g066490 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.1e-14 85.5 63 69.8
SEGI_13390 Sequoiadendron giganteum HOM05D002505 ORTHO05D006559 7.4e-14 82.8 82 47.6
Sopen01g041600 Solanum pennellii HOM05D002505 ORTHO05D006559 1.0e-07 62.4 175 34.3


User provided reference genes

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