Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.1032 Acer truncatum HOM05D003405 ORTHO05D003920 2.9e-53 211.8 126 100.0
Atru.chr3.672 Acer truncatum HOM05D003405 ORTHO05D003920 9.8e-41 170.2 124 84.7
Atru.chr3.717 Acer truncatum HOM05D003405 ORTHO05D003920 6.4e-40 167.5 124 83.1
Ciclev10004806m.g Citrus clementina HOM05D003405 ORTHO05D003920 1.1e-31 140.2 128 62.5
Manes.12G078200 Manihot esculenta HOM05D003405 ORTHO05D003920 1.9e-31 139.4 123 64.2
Manes.01G139900 Manihot esculenta HOM05D003405 ORTHO05D003920 8.6e-29 130.6 123 61.0
GSVIVG01018880001 Vitis vinifera HOM05D003405 ORTHO05D003920 1.5e-28 129.8 127 59.8
Potri.007G019833 Populus trichocarpa HOM05D003405 ORTHO05D003920 1.9e-28 129.4 123 60.2
TAR376G0111 Trochodendron aralioides HOM05D003405 ORTHO05D003920 3.3e-28 128.6 123 59.3
Potri.007G019601 Populus trichocarpa HOM05D003405 ORTHO05D003920 4.3e-28 128.3 123 60.2
Dinv32930 Davidia involucrata HOM05D003405 ORTHO05D003920 1.2e-27 126.7 123 60.2
DCAR_023249 Daucus carota HOM05D003405 ORTHO05D003920 4.7e-27 124.8 123 58.5
MD12G1093200 Malus domestica HOM05D003405 ORTHO05D003920 6.2e-27 124.4 126 56.3
Haze_21717 Corylus avellana HOM05D003405 ORTHO05D003920 1.1e-26 123.6 127 55.1
Duzib264G0139 Durio zibethinus HOM05D003405 ORTHO05D003920 1.1e-26 123.6 123 58.5
Cpa.g.sc89.74 Carica papaya HOM05D003405 ORTHO05D003920 3.1e-26 122.1 121 58.7
Dinv34758 Davidia involucrata HOM05D003405 ORTHO05D003920 3.1e-26 122.1 123 56.9
Gorai.012G034400 Gossypium raimondii HOM05D003405 ORTHO05D003920 3.1e-26 122.1 123 58.5
Hma1.2p1_0822F.1_g224510 Hydrangea macrophylla HOM05D003405 ORTHO05D003920 3.1e-26 122.1 127 57.5
Eucgr.H02854 Eucalyptus grandis HOM05D003405 ORTHO05D003920 4.0e-26 121.7 123 54.5
Sabra07G0016700 Salix brachista HOM05D003405 ORTHO05D003920 4.0e-26 121.7 143 51.7
Gohir.A05G385400 Gossypium hirsutum HOM05D003405 ORTHO05D003920 5.2e-26 121.3 123 57.7
MD14G1085200 Malus domestica HOM05D003405 ORTHO05D003920 1.2e-25 120.2 126 54.8
Gohir.D04G022600 Gossypium hirsutum HOM05D003405 ORTHO05D003920 2.6e-25 119.0 123 56.1
Actinidia09137 Actinidia chinensis HOM05D003405 ORTHO05D003920 4.4e-25 118.2 123 58.5
COL.COLO4_35734 Corchorus olitorius HOM05D003405 ORTHO05D003920 4.4e-25 118.2 123 55.3
Prupe.7G160700 Prunus persica HOM05D003405 ORTHO05D003920 9.9e-25 117.1 126 53.2
CiPaw.07G051500 Carya illinoinensis HOM05D003405 ORTHO05D003920 1.3e-24 116.7 123 51.2
Lj9A413G54 Lonicera japonica HOM05D003405 ORTHO05D003920 1.3e-24 116.7 124 54.8
THA.LOC104821304 Tarenaya hassleriana HOM05D003405 ORTHO05D003920 1.3e-24 116.7 124 57.3
TWI73G0135 Tripterygium wilfordii HOM05D003405 ORTHO05D003920 3.8e-24 115.2 123 61.8
Thecc.01G131300 Theobroma cacao HOM05D003405 ORTHO05D003920 6.4e-24 114.4 123 57.7
Cfa013259 Carpinus fangiana HOM05D003405 ORTHO05D006100 8.4e-24 114.0 123 52.0
CSS0031696 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 3.2e-23 112.1 123 53.7
CSS0045191 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 3.2e-23 112.1 123 53.7
CDE09G0427 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 3.2e-23 112.1 125 50.4
PGR083G0802 Punica granatum HOM05D003405 ORTHO05D003920 3.2e-23 112.1 123 51.2
Ah.05g167170 Amaranthus hybridus HOM05D003405 ORTHO05D003920 5.4e-23 111.3 124 54.0
CiPaw.08G138300 Carya illinoinensis HOM05D003405 ORTHO05D003920 7.1e-23 110.9 123 56.1
MBI02_g23715_MAGBIO Magnolia biondii HOM05D003405 ORTHO05D003920 7.1e-23 110.9 124 54.8
MBI16_g36844_MAGBIO Magnolia biondii HOM05D003405 ORTHO05D003920 7.1e-23 110.9 124 55.6
Sopen04g001310 Solanum pennellii HOM05D003405 ORTHO05D003920 9.3e-23 110.5 125 53.6
Cc04_g14820 Coffea canephora HOM05D003405 ORTHO05D003920 1.2e-22 110.2 123 51.2
Solyc04g005330.3 Solanum lycopersicum HOM05D003405 ORTHO05D003920 1.2e-22 110.2 125 53.6
QL06p035199 Quercus lobata HOM05D003405 ORTHO05D003920 2.7e-22 109.0 123 48.8
CDE09G0650 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 7.8e-22 107.5 121 49.6
Aa31LG6G1580 Aethionema arabicum HOM05D003405 ORTHO05D003920 1.3e-21 106.7 124 49.2
Oeu028071.1 Olea europaea HOM05D003405 ORTHO05D003920 1.3e-21 106.7 123 48.8
SGA_v2.0_scaffold80G25931 Striga asiatica HOM05D003405 ORTHO05D003920 1.7e-21 106.3 123 48.8
CARHR225780 Cardamine hirsuta HOM05D003405 ORTHO05D003920 2.3e-21 105.9 127 50.4
CDE02G2548 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 2.3e-21 105.9 125 48.8
AL7G35270 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 5.1e-21 104.8 125 52.0
BcaB04g18507 Brassica carinata HOM05D003405 ORTHO05D003920 5.1e-21 104.8 123 48.8
Migut.H00806 Erythranthe guttata HOM05D003405 ORTHO05D003920 6.6e-21 104.4 124 50.0
ClCG04G004000 Citrullus lanatus HOM05D003405 ORTHO05D003920 8.7e-21 104.0 123 49.6
PGSC0003DMG400023568 Solanum tuberosum HOM05D003405 ORTHO05D003920 8.7e-21 104.0 123 50.4
BolC1t01269H Brassica oleracea HOM05D003405 ORTHO05D003920 1.9e-20 102.8 123 49.6
BraA08t33398Z Brassica rapa HOM05D003405 ORTHO05D003920 1.9e-20 102.8 126 48.4
FvH4_5g33300 Fragaria vesca HOM05D003405 ORTHO05D003920 2.5e-20 102.4 125 50.4
MELO3C004100.2 Cucumis melo HOM05D003405 ORTHO05D003920 4.3e-20 101.7 123 48.0
Thhalv10024971m.g Eutrema salsugineum HOM05D003405 ORTHO05D003920 4.3e-20 101.7 124 47.6
CSS0031848 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 5.6e-20 101.3 116 53.4
RcHm_v2.0_Chr2g0100561 Rosa chinensis HOM05D003405 ORTHO05D003920 5.6e-20 101.3 124 50.8
BcaC09g51456 Brassica carinata HOM05D003405 ORTHO05D003920 7.3e-20 100.9 129 48.1
C01p12940 Brassica napus HOM05D003405 ORTHO05D003920 7.3e-20 100.9 129 48.1
SGA_v2.0_scaffold81G26011 Striga asiatica HOM05D003405 ORTHO05D003920 7.3e-20 100.9 131 48.1
CSS0037270 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 1.3e-19 100.1 123 50.4
CsaV3_2G007870 Cucumis sativus L. HOM05D003405 ORTHO05D003920 1.3e-19 100.1 123 46.3
Nitab4.5_0003101g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 1.3e-19 100.1 125 51.2
AT4G18905 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 1.6e-19 99.8 128 49.2
BcaNung04868 Brassica carinata HOM05D003405 ORTHO05D003920 1.6e-19 99.8 123 48.0
arahy.Tifrunner.gnm1.ann1.LTR966 Arachis hypogaea HOM05D003405 ORTHO05D003920 2.1e-19 99.4 123 48.8
PSO761G0245 Papaver somniferum HOM05D003405 ORTHO05D003920 2.1e-19 99.4 121 48.8
Sc09g0007320 Simmondsia chinensis HOM05D003405 ORTHO05D003920 2.8e-19 99.0 123 54.5
BraA01t01039Z Brassica rapa HOM05D003405 ORTHO05D003920 3.6e-19 98.6 123 47.2
A01p10930 Brassica napus HOM05D003405 ORTHO05D003920 4.8e-19 98.2 129 45.7
Lsat_1_v5_gn_5_59220 Lactuca sativa HOM05D003405 ORTHO05D003920 4.8e-19 98.2 127 46.5
Sed0024756 Sechium edule HOM05D003405 ORTHO05D003920 4.8e-19 98.2 123 47.2
Sp7g17610 Schrenkiella parvula HOM05D003405 ORTHO05D003920 6.2e-19 97.8 125 57.6
arahy.Tifrunner.gnm1.ann1.98W4LT Arachis hypogaea HOM05D003405 ORTHO05D003920 8.1e-19 97.4 125 49.6
FAN08G1135 Fragaria x ananassa HOM05D003405 ORTHO05D003920 1.1e-18 97.1 139 45.3
FAN18G4171 Fragaria x ananassa HOM05D003405 ORTHO05D003920 1.1e-18 97.1 139 45.3
Carub.0007s2229 Capsella rubella HOM05D003405 ORTHO05D003920 1.4e-18 96.7 129 48.1
FAN04G1939 Fragaria x ananassa HOM05D003405 ORTHO05D003920 1.4e-18 96.7 125 52.8
CANSAT11G1046 Cannabis sativa HOM05D003405 ORTHO05D003920 6.9e-18 94.4 136 44.1
ATR0693G254 Amborella trichopoda HOM05D003405 ORTHO05D003920 9.0e-18 94.0 125 44.0
arahy.Tifrunner.gnm1.ann1.1Z7RSE Arachis hypogaea HOM05D003405 ORTHO05D003920 9.0e-18 94.0 123 48.8
AL7G35280 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 1.2e-17 93.6 128 51.6
Carub.0007s2230 Capsella rubella HOM05D003405 ORTHO05D003920 1.2e-17 93.6 126 44.4
EL10As7g23803 Beta vulgaris HOM05D003405 ORTHO05D003920 2.0e-17 92.8 124 47.6
Nitab4.5_0000401g0230 Nicotiana tabacum HOM05D003405 ORTHO05D003920 2.0e-17 92.8 118 50.8
LjContig00081g0028006 Lotus japonicus HOM05D003405 ORTHO05D003920 2.6e-17 92.4 126 46.0
arahy.Tifrunner.gnm1.ann1.AGQ12H Arachis hypogaea HOM05D003405 ORTHO05D003920 3.4e-17 92.0 121 48.8
arahy.Tifrunner.gnm1.ann1.015YF3 Arachis hypogaea HOM05D003405 ORTHO05D003920 5.8e-17 91.3 123 58.5
BcaC01g00577 Brassica carinata HOM05D003405 ORTHO05D003920 5.8e-17 91.3 127 45.7
arahy.Tifrunner.gnm1.ann1.LKD0H4 Arachis hypogaea HOM05D003405 ORTHO05D003920 7.6e-17 90.9 121 47.9
FAN26G2328 Fragaria x ananassa HOM05D003405 ORTHO05D003920 7.6e-17 90.9 116 50.9
Medtr5g097870 Medicago truncatula HOM05D003405 ORTHO05D003920 9.9e-17 90.5 125 48.8
Hund18693 Selenicereus undatus HOM05D003405 ORTHO05D003920 2.2e-16 89.4 124 50.0
PGSC0003DMG402005959 Solanum tuberosum HOM05D003405 ORTHO05D003920 2.9e-16 89.0 123 48.8
TPR.G15067 Trifolium pratense HOM05D003405 ORTHO05D003920 4.9e-16 88.2 124 47.6
FAN28G2580 Fragaria x ananassa HOM05D003405 ORTHO05D003920 6.4e-16 87.8 116 49.1
C03p81560 Brassica napus HOM05D003405 ORTHO05D003920 1.1e-15 87.0 127 44.1
BolC3t20426H Brassica oleracea HOM05D003405 ORTHO05D003920 1.1e-15 87.0 127 44.1
BraA08t33397Z Brassica rapa HOM05D003405 ORTHO05D003920 1.4e-15 86.7 127 44.1
Nitab4.5_0001652g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 3.2e-15 85.5 123 45.5
Phvul.008G287000 Phaseolus vulgaris HOM05D003405 ORTHO05D003920 4.2e-15 85.1 123 46.3
FAN23G2718 Fragaria x ananassa HOM05D003405 ORTHO05D003920 9.3e-15 84.0 115 44.3
arahy.Tifrunner.gnm1.ann1.555Q75 Arachis hypogaea HOM05D003405 ORTHO05D003920 1.6e-14 83.2 115 49.6
unitig_52.g17243 Utricularia gibba HOM05D003405 ORTHO05D003920 1.6e-14 83.2 125 44.8
vmacro02576 Vaccinium macrocarpon HOM05D003405 ORTHO05D003920 1.6e-14 83.2 184 38.6
Actinidia00757 Actinidia chinensis HOM05D003405 ORTHO05D003920 2.7e-14 82.4 98 62.2
Nitab4.5_0004347g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 2.7e-14 82.4 123 45.5
PSO832G1536 Papaver somniferum HOM05D003405 ORTHO05D003920 3.5e-14 82.0 145 36.6
BcaB04g18506 Brassica carinata HOM05D003405 ORTHO05D003920 4.6e-14 81.6 124 45.2
Thhalv10027098m.g Eutrema salsugineum HOM05D003405 ORTHO05D003920 4.6e-14 81.6 127 44.1
Psat2g004000 Pisum sativum HOM05D003405 ORTHO05D003920 6.0e-14 81.3 124 42.7
Ca_06470_v3 Cicer arietinum L. HOM05D003405 ORTHO05D003920 7.9e-14 80.9 124 41.1
Glyma.02G307200 Glycine max HOM05D003405 ORTHO05D003920 1.0e-13 80.5 123 43.9
VMungo0647G2029 Vigna mungo HOM05D003405 ORTHO05D003920 5.1e-13 78.2 123 43.9
Glyma.14G005900 Glycine max HOM05D003405 ORTHO05D003920 6.6e-13 77.8 123 43.9
CARHR243680 Cardamine hirsuta HOM05D003405 ORTHO05D003920 2.5e-12 75.9 130 40.0
SalBow6G4756 Salvia bowleyana HOM05D003405 ORTHO05D003920 9.6e-12 73.9 124 39.5
Mapoly0004s0245 Marchantia polymorpha HOM05D003405 ORTHO05D003920 1.3e-11 73.6 128 41.4
AagrBONN_evm.TU.Sc2ySwM_228.2786 Anthoceros agrestis HOM05D003405 ORTHO05D003920 2.1e-11 72.8 128 39.8
BcaC01g00578 Brassica carinata HOM05D003405 ORTHO05D003920 8.1e-11 70.9 59 61.0
BolC3t20427H Brassica oleracea HOM05D003405 ORTHO05D003920 8.1e-11 70.9 59 61.0
arahy.Tifrunner.gnm1.ann1.ZY1N1V Arachis hypogaea HOM05D003405 ORTHO05D003920 1.1e-10 70.5 65 61.5
CSS0047421 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 1.8e-10 69.7 85 50.6
Peaxi162Scf00047g00219 Petunia axillaris HOM05D003405 ORTHO05D003920 4.0e-10 68.6 67 59.7
BcaNung00602 Brassica carinata HOM05D003405 ORTHO05D003920 5.3e-10 68.2 129 35.7
Pp3c4_20160 Physcomitrium patens HOM05D003405 ORTHO05D003920 9.0e-10 67.4 123 46.3
FvH4_1g12600 Fragaria vesca HOM05D003405 ORTHO05D003920 1.2e-09 67.0 53 66.0
FAN19G0435 Fragaria x ananassa HOM05D003405 ORTHO05D003920 1.2e-09 67.0 53 66.0
FAN28G1735 Fragaria x ananassa HOM05D003405 ORTHO05D003920 1.2e-09 67.0 53 66.0
arahy.Tifrunner.gnm1.ann1.A1R0CF Arachis hypogaea HOM05D003405 ORTHO05D003920 2.0e-09 66.2 65 60.0
arahy.Tifrunner.gnm1.ann1.LK2XUL Arachis hypogaea HOM05D003405 ORTHO05D003920 2.0e-09 66.2 60 58.3
AT4G18900 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 2.6e-09 65.9 106 41.5
MELO3C005151.2 Cucumis melo HOM05D003405 ORTHO05D003920 5.8e-09 64.7 57 57.9
C07p50090 Brassica napus HOM05D003405 ORTHO05D003920 1.3e-08 63.5 60 53.3
arahy.Tifrunner.gnm1.ann1.6C167N Arachis hypogaea HOM05D003405 ORTHO05D003920 1.7e-08 63.2 65 58.5
Os01g0924300 Oryza sativa ssp. japonica HOM05D003405 ORTHO05D003920 2.9e-08 62.4 123 43.1
C03p81570 Brassica napus HOM05D003405 ORTHO05D003920 3.8e-08 62.0 61 52.5
AT4G35370 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 6.4e-08 61.2 122 33.6
C01p03540 Brassica napus HOM05D003405 ORTHO05D003920 8.4e-08 60.8 129 34.9
BolC1t00343H Brassica oleracea HOM05D003405 ORTHO05D003920 8.4e-08 60.8 129 34.9
AL7G15790 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 1.1e-07 60.5 132 34.8
AUR62039160 Chenopodium quinoa HOM05D003405 ORTHO05D003920 1.9e-07 59.7 64 51.6
BolC7t45512H Brassica oleracea HOM05D003405 ORTHO05D003920 2.4e-07 59.3 67 46.3
Lalb_Chr17g0349241 Lupinus albus HOM05D003405 ORTHO05D003920 2.4e-07 59.3 124 45.2
ClCG06G014970 Citrullus lanatus HOM05D003405 ORTHO05D003920 4.2e-07 58.5 46 56.5
HanXRQChr03g0083001 Helianthus annuus HOM05D003405 ORTHO05D003920 5.5e-07 58.2 65 49.2
CDE02G4528 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 2.7e-06 55.8 55 47.3


User provided reference genes

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