Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 0.0e+00 1484.9 783 100.0
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 0.0e+00 1321.6 789 88.7
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1242.3 790 83.7
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1221.1 790 82.3
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 0.0e+00 1214.1 787 80.4
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 0.0e+00 1213.0 789 80.6
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1211.1 790 81.6
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 0.0e+00 1208.0 789 80.6
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 0.0e+00 1207.2 799 80.2
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1207.2 788 80.6
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 0.0e+00 1202.6 789 79.7
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1202.2 788 80.3
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 0.0e+00 1201.0 791 81.7
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 0.0e+00 1200.7 788 80.2
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1198.0 788 80.1
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1194.5 791 79.4
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1191.8 789 79.6
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1191.0 788 79.6
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 0.0e+00 1190.6 790 80.3
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1190.3 788 79.6
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 0.0e+00 1189.5 791 79.3
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 0.0e+00 1188.3 790 80.0
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1186.4 804 78.2
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 0.0e+00 1186.4 790 79.4
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 0.0e+00 1184.9 790 80.3
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1183.3 790 79.6
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1182.2 787 79.0
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 0.0e+00 1180.6 794 80.0
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1180.6 790 80.4
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1176.0 790 79.5
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 0.0e+00 1173.3 795 78.7
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 0.0e+00 1171.4 787 78.0
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 0.0e+00 1171.4 790 78.2
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 0.0e+00 1169.8 791 77.7
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1162.9 757 80.4
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 0.0e+00 1162.5 789 77.7
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 0.0e+00 1162.1 789 78.6
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1161.0 789 77.9
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 0.0e+00 1158.3 791 76.5
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1153.3 788 78.9
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1152.5 789 77.6
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1150.2 790 77.8
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 0.0e+00 1149.8 789 77.4
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 0.0e+00 1149.8 758 79.4
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1146.0 757 79.3
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 0.0e+00 1145.2 790 75.8
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 0.0e+00 1140.9 789 76.9
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 0.0e+00 1140.6 898 70.2
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1137.5 784 78.6
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 0.0e+00 1135.9 789 76.7
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 0.0e+00 1133.2 789 76.3
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1132.9 784 75.9
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 0.0e+00 1132.5 791 75.6
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1129.4 784 75.9
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 0.0e+00 1127.5 790 74.9
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1126.7 757 78.7
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 0.0e+00 1125.2 758 77.7
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1124.8 758 78.4
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 0.0e+00 1123.2 790 77.0
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1121.7 785 74.5
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 0.0e+00 1119.8 796 76.3
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 0.0e+00 1117.4 789 76.2
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1114.8 789 75.5
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 0.0e+00 1114.0 789 74.9
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1109.0 789 74.0
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 0.0e+00 1107.8 757 77.7
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1106.7 790 73.7
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 0.0e+00 1105.5 790 73.9
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1104.7 790 73.4
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1103.6 790 74.1
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 0.0e+00 1102.4 789 73.5
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1101.3 793 74.0
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1099.0 790 73.8
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 0.0e+00 1098.6 790 73.9
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 0.0e+00 1098.6 790 73.5
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 0.0e+00 1097.4 788 74.0
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 0.0e+00 1094.7 790 73.5
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 0.0e+00 1092.4 790 72.9
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1089.3 790 72.9
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1088.2 790 72.8
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1088.2 788 74.4
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 0.0e+00 1086.2 790 72.8
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 0.0e+00 1085.9 791 74.0
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1084.3 790 72.9
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 0.0e+00 1083.2 792 72.3
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 0.0e+00 1077.4 836 70.8
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 2.1e-311 1072.0 758 73.6
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 5.0e-308 1060.8 789 71.1
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 6.5e-308 1060.4 733 74.6
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 1.3e-305 1052.7 790 69.6
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 5.0e-300 1034.2 790 70.8
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 9.4e-299 1030.0 863 65.6
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 3.6e-298 1028.1 791 69.8
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 6.7e-297 1023.8 785 69.8
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 3.4e-293 1011.5 669 77.6
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 7.2e-291 1003.8 705 74.5
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 2.4e-286 988.8 787 66.5
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 1.5e-283 979.5 789 66.4
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 1.9e-283 979.2 649 78.0
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 2.1e-282 975.7 765 67.8
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 2.3e-281 972.2 649 77.5
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 2.0e-280 969.1 865 63.1
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 4.4e-280 968.0 757 69.2
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 7.2e-275 950.7 626 78.0
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 8.8e-273 943.7 635 77.8
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 7.7e-269 930.6 786 64.8
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 8.5e-268 927.2 788 61.4
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 4.5e-261 904.8 569 81.4
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 4.6e-253 878.2 787 58.6
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 1.9e-251 872.8 787 59.0
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 2.2e-247 859.4 787 57.8
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 1.5e-227 793.5 780 53.8
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 8.9e-225 784.3 786 59.0
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.4e-222 776.9 803 59.8
Cpa.g.sc2.203 Carica papaya HOM05D005394 ORTHO05D006909 1.3e-204 717.2 426 86.4
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 9.4e-174 614.8 322 99.7
Oeu033979.1 Olea europaea HOM05D005394 ORTHO05D006909 1.5e-166 590.9 476 68.5
Actinidia12539 Actinidia chinensis HOM05D005394 ORTHO05D006909 9.8e-155 551.6 440 69.5
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 1.7e-130 471.1 763 38.5
CDE09G0652 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 2.3e-127 460.7 300 77.3
MBI10_g36389_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 2.2e-122 444.1 261 86.2
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 4.3e-118 429.9 788 34.5
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 5.6e-118 429.5 347 67.4
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 9.6e-110 402.1 328 69.5
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 1.6e-93 348.2 855 31.2
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 2.3e-87 327.8 280 67.5
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.0e-75 288.1 306 58.2
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 2.0e-62 245.0 233 63.1
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 1.1e-49 202.6 140 73.6
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 6.1e-48 196.8 132 75.8
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 2.7e-43 181.4 127 72.4
CSS0006481 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.0e-42 179.5 142 73.2
unitig_748.g8066 Utricularia gibba HOM05D005394 ORTHO05D006909 5.0e-34 150.6 121 67.8
CSS0027532 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 4.2e-33 147.5 160 54.4
CSS0003150 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 7.2e-33 146.7 149 55.0
CSS0047075 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 9.5e-33 146.4 149 55.0
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 1.6e-16 92.4 71 71.8
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 8.1e-08 63.5 60 56.7


User provided reference genes

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