Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.BG.3.p Acer truncatum HOM05D003537 ORTHO05D004180 1.8e-33 145.2 68 100.0
QL02p021910 Quercus lobata HOM05D003537 ORTHO05D004180 8.5e-31 136.3 68 85.3
CANSAT25G1571 Cannabis sativa HOM05D003537 ORTHO05D004180 3.2e-30 134.4 68 86.8
COL.COLO4_18845 Corchorus olitorius HOM05D003537 ORTHO05D004180 1.6e-29 132.1 68 88.2
arahy.Tifrunner.gnm1.ann1.9FI3T7 Arachis hypogaea HOM05D003537 ORTHO05D004180 8.0e-29 129.8 68 79.4
arahy.Tifrunner.gnm1.ann1.DMU7Q7 Arachis hypogaea HOM05D003537 ORTHO05D004180 8.0e-29 129.8 68 79.4
Haze_21529 Corylus avellana HOM05D003537 ORTHO05D004180 1.1e-27 125.9 68 83.8
VMungo1309G0037 Vigna mungo HOM05D003537 ORTHO05D004180 2.6e-27 124.8 68 80.9
Eucgr.C01175 Eucalyptus grandis HOM05D003537 ORTHO05D004180 5.7e-27 123.6 68 77.9
ECA246G5170 Erigeron canadensis HOM05D003537 ORTHO05D004180 3.7e-26 120.9 68 76.5
CsaV3_3G046470 Cucumis sativus L. HOM05D003537 ORTHO05D004180 4.8e-26 120.6 68 79.4
Actinidia21987 Actinidia chinensis HOM05D003537 ORTHO05D004180 6.3e-26 120.2 67 76.1
Nitab4.5_0002658g0060 Nicotiana tabacum HOM05D003537 ORTHO05D004180 6.3e-26 120.2 68 76.5
HanXRQChr16g0505371 Helianthus annuus HOM05D003537 ORTHO05D004180 8.2e-26 119.8 67 76.1
Actinidia40471 Actinidia chinensis HOM05D003537 ORTHO05D004180 1.4e-25 119.0 67 74.6
Gohir.A13G199600 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.8e-25 118.6 68 73.5
CiPaw.04G171200 Carya illinoinensis HOM05D003537 ORTHO05D004180 2.4e-25 118.2 68 73.5
Gohir.D13G205100 Gossypium hirsutum HOM05D003537 ORTHO05D004180 2.4e-25 118.2 68 73.5
Gorai.013G234000 Gossypium raimondii HOM05D003537 ORTHO05D004180 2.4e-25 118.2 68 73.5
Cc06_g08500 Coffea canephora HOM05D003537 ORTHO05D004180 3.1e-25 117.9 68 73.5
Duzib150G0412 Durio zibethinus HOM05D003537 ORTHO05D004180 4.1e-25 117.5 68 73.5
Lj1g0012711 Lotus japonicus HOM05D003537 ORTHO05D004180 4.1e-25 117.5 68 79.4
Potri.018G068300 Populus trichocarpa HOM05D003537 ORTHO05D004180 9.1e-25 116.3 68 69.1
CsaV3_2G002870 Cucumis sativus L. HOM05D003537 ORTHO05D004180 1.2e-24 115.9 67 74.6
SGA_v2.0_scaffold12G06124 Striga asiatica HOM05D003537 ORTHO05D004180 1.6e-24 115.5 68 70.6
CSS0014531 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 2.0e-24 115.2 67 80.6
Glyma.17G114800 Glycine max HOM05D003537 ORTHO05D004180 2.0e-24 115.2 68 69.1
Lsat_1_v5_gn_8_58621 Lactuca sativa HOM05D003537 ORTHO05D004180 2.0e-24 115.2 68 70.6
Medtr4g114180 Medicago truncatula HOM05D003537 ORTHO05D004180 2.6e-24 114.8 68 70.6
Gorai.010G114400 Gossypium raimondii HOM05D003537 ORTHO05D004180 3.5e-24 114.4 68 80.9
Sed0007274 Sechium edule HOM05D003537 ORTHO05D004180 3.5e-24 114.4 68 76.5
Gohir.A06G055900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 4.5e-24 114.0 68 70.6
Gohir.D06G054550 Gossypium hirsutum HOM05D003537 ORTHO05D004180 4.5e-24 114.0 68 70.6
SGA_v2.0_scaffold17G08031 Striga asiatica HOM05D003537 ORTHO05D004180 4.5e-24 114.0 68 73.5
Migut.K00478 Erythranthe guttata HOM05D003537 ORTHO05D004180 5.9e-24 113.6 68 75.0
Glyma.13G167200 Glycine max HOM05D003537 ORTHO05D004180 5.9e-24 113.6 68 70.6
MSTRG.21979 Avicennia marina HOM05D003537 ORTHO05D004180 7.7e-24 113.2 68 70.6
Ca_21681_v3 Cicer arietinum L. HOM05D003537 ORTHO05D004180 7.7e-24 113.2 68 73.5
Ciclev10009876m.g Citrus clementina HOM05D003537 ORTHO05D004180 7.7e-24 113.2 67 79.1
Psat0s2233g0360 Pisum sativum HOM05D003537 ORTHO05D004180 1.0e-23 112.8 68 76.5
Eucgr.C02783 Eucalyptus grandis HOM05D003537 ORTHO05D004180 1.3e-23 112.5 68 73.5
Manes.06G058601 Manihot esculenta HOM05D003537 ORTHO05D004180 1.3e-23 112.5 67 73.1
Gohir.A06G098204 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.7e-23 112.1 68 77.9
PGR142G2689 Punica granatum HOM05D003537 ORTHO05D004180 1.7e-23 112.1 68 67.6
QL10p023445 Quercus lobata HOM05D003537 ORTHO05D004180 1.7e-23 112.1 68 67.6
AL5G26940 Arabidopsis lyrata HOM05D003537 ORTHO05D004180 2.2e-23 111.7 68 69.1
Gorai.010G063900 Gossypium raimondii HOM05D003537 ORTHO05D004180 2.2e-23 111.7 68 73.5
Haze_25576 Corylus avellana HOM05D003537 ORTHO05D004180 5.0e-23 110.5 68 73.5
Migut.K00479 Erythranthe guttata HOM05D003537 ORTHO05D004180 5.0e-23 110.5 68 66.2
unitig_26.g9662 Utricularia gibba HOM05D003537 ORTHO05D004180 5.0e-23 110.5 68 69.1
Cpa.g.sc75.27 Carica papaya HOM05D003537 ORTHO05D004180 1.1e-22 109.4 68 73.5
Cc08_g00790 Coffea canephora HOM05D003537 ORTHO05D004180 1.9e-22 108.6 67 74.6
Lj4g0026965 Lotus japonicus HOM05D003537 ORTHO05D004180 2.5e-22 108.2 68 73.5
Nitab4.5_0010481g0030 Nicotiana tabacum HOM05D003537 ORTHO05D004180 4.2e-22 107.5 68 70.6
Gohir.A06G143050 Gossypium hirsutum HOM05D003537 ORTHO05D004180 7.2e-22 106.7 68 66.2
Pp3c18_21980 Physcomitrium patens HOM05D003537 ORTHO05D004180 7.2e-22 106.7 68 66.2
GSVIVG01015532001 Vitis vinifera HOM05D003537 ORTHO05D004180 7.2e-22 106.7 68 70.6
Peaxi162Scf00256g00035 Petunia axillaris HOM05D003537 ORTHO05D004180 9.4e-22 106.3 95 54.7
BcaB01g00893 Brassica carinata HOM05D003537 ORTHO05D004180 1.2e-21 105.9 68 66.2
EL10Ac8g18657 Beta vulgaris HOM05D003537 ORTHO05D004180 1.6e-21 105.5 68 70.6
ATR1120G202 Amborella trichopoda HOM05D003537 ORTHO05D004180 2.7e-21 104.8 68 70.6
Thecc.09G126600 Theobroma cacao HOM05D003537 ORTHO05D004180 3.6e-21 104.4 68 69.1
PSO170G5454 Papaver somniferum HOM05D003537 ORTHO05D004180 4.7e-21 104.0 68 72.1
PSO455G0045 Papaver somniferum HOM05D003537 ORTHO05D004180 4.7e-21 104.0 68 72.1
Ah.14g079820 Amaranthus hybridus HOM05D003537 ORTHO05D004180 1.0e-20 102.8 68 69.1
TPR.G10724 Trifolium pratense HOM05D003537 ORTHO05D004180 1.0e-20 102.8 68 67.6
Aa31LG8G16720 Aethionema arabicum HOM05D003537 ORTHO05D004180 1.4e-20 102.4 68 69.1
ClCG05G016980 Citrullus lanatus HOM05D003537 ORTHO05D004180 1.4e-20 102.4 68 70.6
Lsat_1_v5_gn_5_30800 Lactuca sativa HOM05D003537 ORTHO05D004180 2.3e-20 101.7 57 75.4
CANSAT11G2285 Cannabis sativa HOM05D003537 ORTHO05D004180 3.0e-20 101.3 68 67.6
Hma1.2p1_0018F.1_g012400 Hydrangea macrophylla HOM05D003537 ORTHO05D004180 3.0e-20 101.3 79 55.7
Lsat_1_v5_gn_7_45281 Lactuca sativa HOM05D003537 ORTHO05D004180 3.0e-20 101.3 68 66.2
Medtr3g107397 Medicago truncatula HOM05D003537 ORTHO05D004180 3.0e-20 101.3 68 70.6
TPR.G3106 Trifolium pratense HOM05D003537 ORTHO05D004180 3.0e-20 101.3 68 73.5
Sabra18G0030700 Salix brachista HOM05D003537 ORTHO05D004180 4.0e-20 100.9 68 69.1
arahy.Tifrunner.gnm1.ann1.4IXQ36 Arachis hypogaea HOM05D003537 ORTHO05D004180 6.8e-20 100.1 68 64.7
arahy.Tifrunner.gnm1.ann1.EPB35R Arachis hypogaea HOM05D003537 ORTHO05D004180 6.8e-20 100.1 68 64.7
arahy.Tifrunner.gnm1.ann1.F0XIJD Arachis hypogaea HOM05D003537 ORTHO05D004180 6.8e-20 100.1 68 64.7
arahy.Tifrunner.gnm1.ann1.P86YY0 Arachis hypogaea HOM05D003537 ORTHO05D004180 6.8e-20 100.1 68 64.7
SMO145G0190 Selaginella moellendorffii HOM05D003537 ORTHO05D004180 6.8e-20 100.1 68 60.3
GSVIVG01015534001 Vitis vinifera HOM05D003537 ORTHO05D004180 8.8e-20 99.8 58 72.4
FAN23G0028 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.2e-19 99.4 67 68.7
SEGI_36836 Sequoiadendron giganteum HOM05D003537 ORTHO05D004180 1.5e-19 99.0 68 69.1
Potri.018G028500 Populus trichocarpa HOM05D003537 ORTHO05D004180 4.4e-19 97.4 68 66.2
TAR636G0369 Trochodendron aralioides HOM05D003537 ORTHO05D004180 7.5e-19 96.7 68 70.6
MD02G1031600 Malus domestica HOM05D003537 ORTHO05D004180 2.8e-18 94.7 67 65.7
Sed0005083 Sechium edule HOM05D003537 ORTHO05D004180 3.7e-18 94.4 67 61.2
Psat4g040120 Pisum sativum HOM05D003537 ORTHO05D004180 4.8e-18 94.0 68 66.2
Dinv15950 Davidia involucrata HOM05D003537 ORTHO05D004180 1.4e-17 92.4 67 68.7
Dinv18245 Davidia involucrata HOM05D003537 ORTHO05D004180 1.4e-17 92.4 67 68.7
TWI63G0509 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 1.4e-17 92.4 68 66.2
ECA240G1743 Erigeron canadensis HOM05D003537 ORTHO05D004180 3.1e-17 91.3 67 61.2
THA.LOC104808988 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 3.1e-17 91.3 68 63.2
CiPaw.08G011800 Carya illinoinensis HOM05D003537 ORTHO05D004180 4.1e-17 90.9 68 67.6
Manes.16G121200 Manihot esculenta HOM05D003537 ORTHO05D004180 5.3e-17 90.5 68 67.6
BcaC01g02287 Brassica carinata HOM05D003537 ORTHO05D004180 7.0e-17 90.1 69 62.3
Atru.chr7.1160 Acer truncatum HOM05D003537 ORTHO05D004180 9.1e-17 89.7 68 60.3
Glyma.06G069100 Glycine max HOM05D003537 ORTHO05D004180 9.1e-17 89.7 68 64.7
Mapoly0035s0118 Marchantia polymorpha HOM05D002896 ORTHO05D003263 1.2e-16 89.4 68 58.8
TAR625G0117 Trochodendron aralioides HOM05D003537 ORTHO05D004180 1.6e-16 89.0 68 64.7
MELO3C004506.2 Cucumis melo HOM05D003537 ORTHO05D004180 2.0e-16 88.6 80 57.5
Peaxi162Scf00157g01525 Petunia axillaris HOM05D003537 ORTHO05D004180 2.0e-16 88.6 68 58.8
ClCG11G003050 Citrullus lanatus HOM05D003537 ORTHO05D004180 2.7e-16 88.2 67 61.2
Nn2g12030 Nelumbo nucifera HOM05D003537 ORTHO05D004180 2.7e-16 88.2 67 59.7
Cpa.g.sc259.5 Carica papaya HOM05D003537 ORTHO05D004180 3.5e-16 87.8 68 64.7
Ciclev10009875m.g Citrus clementina HOM05D003537 ORTHO05D004180 3.5e-16 87.8 68 64.7
Thecc.09G026400 Theobroma cacao HOM05D003537 ORTHO05D004180 3.5e-16 87.8 68 67.6
Glyma.04G067500 Glycine max HOM05D003537 ORTHO05D004180 7.7e-16 86.7 68 61.8
HPP92_000667 Vanilla planifolia HOM05D003537 ORTHO05D004180 7.7e-16 86.7 68 60.3
Manes.14G132200 Manihot esculenta HOM05D003537 ORTHO05D004180 1.0e-15 86.3 68 58.8
Lalb_Chr08g0244061 Lupinus albus HOM05D003537 ORTHO05D004180 2.9e-15 84.7 68 60.3
Glyma.04G147800 Glycine max HOM05D003537 ORTHO05D004180 6.5e-15 83.6 68 55.9
RcHm_v2.0_Chr6g0298061 Rosa chinensis HOM05D003537 ORTHO05D004180 6.5e-15 83.6 67 61.2
Hund09242 Selenicereus undatus HOM05D003537 ORTHO05D004180 6.5e-15 83.6 68 61.8
Solyc12g009440.2 Solanum lycopersicum HOM05D003537 ORTHO05D004180 6.5e-15 83.6 68 58.8
Sopen12g004440 Solanum pennellii HOM05D003537 ORTHO05D004180 6.5e-15 83.6 68 58.8
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 6.5e-15 83.6 68 58.8
GSVIVG01035845001 Vitis vinifera HOM05D003537 ORTHO05D004180 6.5e-15 83.6 68 61.8
Prupe.1G480000 Prunus persica HOM05D003537 ORTHO05D004180 8.5e-15 83.2 67 59.7
RcHm_v2.0_Chr2g0088401 Rosa chinensis HOM05D003537 ORTHO05D004180 4.2e-14 80.9 67 59.7
Phvul.003G164500 Phaseolus vulgaris HOM05D003537 ORTHO05D004180 5.5e-14 80.5 68 57.4
FvH4_2g29200 Fragaria vesca HOM05D003537 ORTHO05D004180 9.4e-14 79.7 67 58.2
FAN15G0527 Fragaria x ananassa HOM05D003537 ORTHO05D004180 9.4e-14 79.7 67 58.2
FAN27G1347 Fragaria x ananassa HOM05D003537 ORTHO05D004180 9.4e-14 79.7 67 58.2
Sp5g14270 Schrenkiella parvula HOM05D003537 ORTHO05D004180 9.4e-14 79.7 68 54.4
PGR044G0105 Punica granatum HOM05D003537 ORTHO05D004180 1.2e-13 79.3 68 60.3
Lalb_Chr07g0178961 Lupinus albus HOM05D003537 ORTHO05D004180 2.1e-13 78.6 68 51.5
Dinv41510 Davidia involucrata HOM05D003537 ORTHO05D004180 2.7e-13 78.2 68 58.8
TWI34G1168 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 2.7e-13 78.2 68 54.4
Cfa003377 Carpinus fangiana HOM05D003537 ORTHO05D004180 3.6e-13 77.8 68 57.4
AUR62011130 Chenopodium quinoa HOM05D003537 ORTHO05D004180 3.6e-13 77.8 68 55.9
AUR62013357 Chenopodium quinoa HOM05D003537 ORTHO05D004180 3.6e-13 77.8 68 55.9
A01p25800 Brassica napus HOM05D003537 ORTHO05D004180 4.7e-13 77.4 68 51.5
A06p27250 Brassica napus HOM05D003537 ORTHO05D004180 4.7e-13 77.4 68 52.9
BraA01t02496Z Brassica rapa HOM05D003537 ORTHO05D004180 4.7e-13 77.4 68 51.5
Oeu018469.1 Olea europaea HOM05D003537 ORTHO05D004180 4.7e-13 77.4 68 50.0
AT3G47650 Arabidopsis thaliana HOM05D003537 ORTHO05D004180 8.0e-13 76.6 68 51.5
MD15G1124500 Malus domestica HOM05D003537 ORTHO05D004180 8.0e-13 76.6 43 76.7
Nn8g39452 Nelumbo nucifera HOM05D003537 ORTHO05D004180 8.0e-13 76.6 68 57.4
Glyma.06G222000 Glycine max HOM05D003537 ORTHO05D004180 1.4e-12 75.9 68 57.4
A06p19950 Brassica napus HOM05D003537 ORTHO05D004180 4.0e-12 74.3 68 48.5
BraA06t25078Z Brassica rapa HOM05D003537 ORTHO05D004180 4.0e-12 74.3 68 48.5
MBI01_g36269_MAGBIO Magnolia biondii HOM05D003537 ORTHO05D004180 4.0e-12 74.3 68 57.4
BcaC01g01786 Brassica carinata HOM05D003537 ORTHO05D004180 8.8e-12 73.2 68 48.5
Lalb_Chr13g0301861 Lupinus albus HOM05D003537 ORTHO05D004180 8.8e-12 73.2 68 52.9
VMungo1215G2386 Vigna mungo HOM05D003537 ORTHO05D004180 8.8e-12 73.2 68 54.4
BcaB02g10692 Brassica carinata HOM05D003537 ORTHO05D004180 2.0e-11 72.0 68 54.4
CARHR156330 Cardamine hirsuta HOM05D003537 ORTHO05D004180 2.0e-11 72.0 68 52.9
THA.LOC104815279 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 2.0e-11 72.0 68 51.5
FvH4_1g03260 Fragaria vesca HOM05D003537 ORTHO05D004180 5.7e-11 70.5 68 52.9
FAN19G1671 Fragaria x ananassa HOM05D003537 ORTHO05D004180 5.7e-11 70.5 68 52.9
FAN28G2448 Fragaria x ananassa HOM05D003537 ORTHO05D004180 5.7e-11 70.5 68 52.9
DCAR_003091 Daucus carota HOM05D003537 ORTHO05D004180 7.5e-11 70.1 43 79.1
Rhsim01G0071100 Rhododendron simsii HOM05D003537 ORTHO05D004180 7.5e-11 70.1 67 49.3
RhsimUnG0194700 Rhododendron simsii HOM05D003537 ORTHO05D004180 7.5e-11 70.1 67 49.3
BraA06t25666Z Brassica rapa HOM05D003537 ORTHO05D004180 9.8e-11 69.7 68 52.9
BcaB05g23065 Brassica carinata HOM05D003537 ORTHO05D004180 1.3e-10 69.3 68 51.5
BcaC09g49812 Brassica carinata HOM05D003537 ORTHO05D004180 1.3e-10 69.3 68 51.5
C01p32690 Brassica napus HOM05D003537 ORTHO05D004180 1.3e-10 69.3 68 51.5
BolC1t03207H Brassica oleracea HOM05D003537 ORTHO05D004180 1.3e-10 69.3 68 48.5
Os06g0332800 Oryza sativa ssp. japonica HOM05D003537 ORTHO05D004180 1.3e-10 69.3 67 55.2
Carub.0005s1378 Capsella rubella HOM05D003537 ORTHO05D004180 2.2e-10 68.6 68 50.0
Thhalv10010812m.g Eutrema salsugineum HOM05D003537 ORTHO05D004180 2.8e-10 68.2 68 48.5
vmacro20557 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 8.3e-10 66.6 67 46.3
vmacro23102 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 8.3e-10 66.6 67 46.3
CDE06G2093 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 1.1e-09 66.2 68 47.1
FAN24G0346 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.1e-09 66.2 43 69.8
MCO09G833 Micromonas commoda HOM05D001438 ORTHO05D001336 1.1e-09 66.2 50 52.0
C03p71880 Brassica napus HOM05D003537 ORTHO05D004180 1.4e-09 65.9 68 48.5
C03p67010 Brassica napus HOM05D003537 ORTHO05D004180 2.4e-09 65.1 68 45.6
BolC3t18976H Brassica oleracea HOM05D003537 ORTHO05D004180 2.4e-09 65.1 68 45.6
Prupe.7G243100 Prunus persica HOM05D003537 ORTHO05D004180 2.4e-09 65.1 67 50.7
SalBow1G5494 Salvia bowleyana HOM05D003537 ORTHO05D004180 2.4e-09 65.1 57 52.6
Oeu007500.1 Olea europaea HOM05D003537 ORTHO05D004180 3.1e-09 64.7 68 51.5
Aqoxy7G02181 Aquilegia oxysepala HOM05D003537 ORTHO05D004180 5.4e-09 63.9 68 45.6
Gohir.D06G099500 Gossypium hirsutum HOM05D003537 ORTHO05D004180 5.4e-09 63.9 46 69.6
MD15G1173100 Malus domestica HOM05D003537 ORTHO05D004180 5.4e-09 63.9 67 50.7
CDE04G0424 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 1.6e-08 62.4 68 45.6
Gohir.D08G087900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.6e-08 62.4 58 55.2
HanXRQChr09g0242821 Helianthus annuus HOM05D003537 ORTHO05D004180 4.5e-08 60.8 68 48.5
FAN26G0344 Fragaria x ananassa HOM05D003537 ORTHO05D004180 6.6e-07 57.0 42 64.3
Duzib168G0240 Durio zibethinus HOM05D003537 ORTHO05D004180 1.9e-06 55.5 66 45.5
CSS0006865 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 5.5e-06 53.9 32 71.9
CSS0026750 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 5.5e-06 53.9 32 71.9
Gohir.A10G061300 Gossypium hirsutum HOM05D003537 ORTHO05D004180 7.2e-06 53.5 52 50.0


User provided reference genes

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