Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.BG.284.p Acer truncatum HOM05D007141 ORTHO05D008975 6.0e-14 79.3 33 100.0
Atru.BG.143.p Acer truncatum HOM05D007141 ORTHO05D008975 4.7e-11 69.7 34 94.1
Atru.BG.111.p Acer truncatum HOM05D007141 ORTHO05D008975 5.2e-10 66.2 34 88.2
Atru.chr7.1922 Acer truncatum HOM05D007141 ORTHO05D008975 4.4e-09 63.2 28 96.4
MD08G1066900 Malus domestica HOM05D007141 ORTHO05D008975 9.9e-09 62.0 28 92.9
Ciclev10010008m.g Citrus clementina HOM05D007141 ORTHO05D008975 1.3e-08 61.6 28 92.9
Thecc.09G058700 Theobroma cacao HOM05D007141 ORTHO05D008975 1.7e-08 61.2 28 89.3
Prupe.1G407800 Prunus persica HOM05D007141 ORTHO05D008975 2.9e-08 60.5 28 89.3
Manes.16G083100 Manihot esculenta HOM05D007141 ORTHO05D008975 3.8e-08 60.1 28 89.3
MELO3C011470.2 Cucumis melo HOM05D007141 ORTHO05D008975 6.4e-08 59.3 29 86.2
CsaV3_6G032120 Cucumis sativus L. HOM05D007141 ORTHO05D008975 6.4e-08 59.3 29 86.2
Potri.006G224400 Populus trichocarpa HOM05D007141 ORTHO05D008975 8.4e-08 58.9 28 89.3
Sabra06G0173500 Salix brachista HOM05D007141 ORTHO05D008975 8.4e-08 58.9 28 89.3
ATR0051G046 Amborella trichopoda HOM05D007141 ORTHO05D008975 1.1e-07 58.5 34 73.5
CANSAT25G2947 Cannabis sativa HOM05D007141 ORTHO05D008975 1.1e-07 58.5 28 82.1
Cc08_g11030 Coffea canephora HOM05D007141 ORTHO05D008975 1.1e-07 58.5 28 85.7
Eucgr.C03070 Eucalyptus grandis HOM05D007141 ORTHO05D008975 1.1e-07 58.5 30 83.3
Sc09g0009950 Simmondsia chinensis HOM05D007141 ORTHO05D008975 1.1e-07 58.5 30 83.3
Eucgr.L02859 Eucalyptus grandis HOM05D007141 ORTHO05D008975 1.4e-07 58.2 28 85.7
TPR.G3578 Trifolium pratense HOM05D007141 ORTHO05D008975 1.4e-07 58.2 28 89.3
CiPaw.15G035700 Carya illinoinensis HOM05D007141 ORTHO05D008975 1.9e-07 57.8 28 82.1
Gohir.D07G020900 Gossypium hirsutum HOM05D007141 ORTHO05D008975 1.9e-07 57.8 28 85.7
Gorai.001G021700 Gossypium raimondii HOM05D007141 ORTHO05D008975 1.9e-07 57.8 28 85.7
MBI11_g07534_MAGBIO Magnolia biondii HOM05D007141 ORTHO05D008975 1.9e-07 57.8 28 82.1
QL02p000427 Quercus lobata HOM05D007141 ORTHO05D008975 1.9e-07 57.8 28 85.7
GSVIVG01035422001 Vitis vinifera HOM05D007141 ORTHO05D008975 1.9e-07 57.8 28 82.1
Haze_18140 Corylus avellana HOM05D007141 ORTHO05D008975 2.4e-07 57.4 28 85.7
Duzib150G0643 Durio zibethinus HOM05D007141 ORTHO05D008975 2.4e-07 57.4 28 82.1
Glyma.06G053600 Glycine max HOM05D007141 ORTHO05D008975 2.4e-07 57.4 28 82.1
Lalb_Chr08g0244921 Lupinus albus HOM05D007141 ORTHO05D008975 2.4e-07 57.4 28 82.1
MD08G1067500 Malus domestica HOM05D007141 ORTHO05D008975 2.4e-07 57.4 28 82.1
MD09G1070200 Malus domestica HOM05D007141 ORTHO05D008975 2.4e-07 57.4 28 82.1
Phvul.009G079400 Phaseolus vulgaris HOM05D007141 ORTHO05D008975 2.4e-07 57.4 28 82.1
RcHm_v2.0_Chr6g0311391 Rosa chinensis HOM05D007141 ORTHO05D008975 2.4e-07 57.4 28 82.1
RcHm_v2.0_Chr7g0222241 Rosa chinensis HOM05D007141 ORTHO05D008975 2.4e-07 57.4 28 82.1
ClCG08G009990 Citrullus lanatus HOM05D000426 ORTHO05D000328 3.2e-07 57.0 28 85.7
VMungo1309G2876 Vigna mungo HOM05D007141 ORTHO05D008975 3.2e-07 57.0 28 82.1
arahy.Tifrunner.gnm1.ann1.L1P6F7 Arachis hypogaea HOM05D007141 ORTHO05D008975 5.4e-07 56.2 28 78.6
CSS0014882 Camellia sinensis var. sinensis HOM05D007141 ORTHO05D008975 5.4e-07 56.2 28 82.1
DCAR_003142 Daucus carota HOM05D007141 ORTHO05D008975 5.4e-07 56.2 28 82.1
Dinv12459 Davidia involucrata HOM05D007141 ORTHO05D008975 5.4e-07 56.2 28 82.1
Thhalv10026676m.g Eutrema salsugineum HOM05D007141 ORTHO05D008975 5.4e-07 56.2 28 78.6
Psat5g035560 Pisum sativum HOM05D007141 ORTHO05D008975 5.4e-07 56.2 28 85.7
TWI34G1430 Tripterygium wilfordii HOM05D007141 ORTHO05D008975 5.4e-07 56.2 28 82.1
Ah.10g034080 Amaranthus hybridus HOM05D007141 ORTHO05D008975 7.1e-07 55.8 28 78.6
Gohir.A07G021200 Gossypium hirsutum HOM05D007141 ORTHO05D008975 7.1e-07 55.8 28 82.1
Medtr3g104730 Medicago truncatula HOM05D007141 ORTHO05D008975 7.1e-07 55.8 28 82.1
PSO832G0110 Papaver somniferum HOM05D007141 ORTHO05D008975 7.1e-07 55.8 28 75.0
SalBow4G0322 Salvia bowleyana HOM05D007141 ORTHO05D008975 7.1e-07 55.8 28 78.6
SEGI_38617 Sequoiadendron giganteum HOM05D007141 ORTHO05D008975 7.1e-07 55.8 28 78.6
AL7G18460 Arabidopsis lyrata HOM05D007141 ORTHO05D008975 9.3e-07 55.5 28 78.6
AT4G33100 Arabidopsis thaliana HOM05D007141 ORTHO05D008975 9.3e-07 55.5 28 78.6
A08p17770 Brassica napus HOM05D007141 ORTHO05D008975 9.3e-07 55.5 28 78.6
BolC3t20976H Brassica oleracea HOM05D007141 ORTHO05D008975 9.3e-07 55.5 28 78.6
Carub.0007s0735 Capsella rubella HOM05D007141 ORTHO05D008975 9.3e-07 55.5 28 78.6
CDE07G1700 Ceratophyllum demersum HOM05D007141 ORTHO05D008975 9.3e-07 55.5 28 82.1
FAN15G0931 Fragaria x ananassa HOM05D007141 ORTHO05D008975 9.3e-07 55.5 28 82.1
FAN24G3331 Fragaria x ananassa HOM05D007141 ORTHO05D008975 9.3e-07 55.5 28 82.1
FAN27G0109 Fragaria x ananassa HOM05D007141 ORTHO05D008975 9.3e-07 55.5 28 82.1
C03p86820 Brassica napus HOM05D007141 ORTHO05D008975 1.2e-06 55.1 28 78.6
BraA08t33728Z Brassica rapa HOM05D007141 ORTHO05D008975 1.2e-06 55.1 28 78.6
Aa31LG1G7350 Aethionema arabicum HOM05D007141 ORTHO05D008975 1.6e-06 54.7 28 78.6
Hma1.2p1_0644F.1_g194800 Hydrangea macrophylla HOM05D007141 ORTHO05D008975 1.6e-06 54.7 28 78.6
Hma1.2p1_1832F.1_g304585 Hydrangea macrophylla HOM05D007141 ORTHO05D008975 1.6e-06 54.7 28 78.6
Atru.BG.261.p Acer truncatum HOM05D007141 ORTHO05D008975 2.1e-06 54.3 30 90.0
Actinidia25707 Actinidia chinensis HOM05D007141 ORTHO05D008975 2.1e-06 54.3 28 82.1
CSS0018983 Camellia sinensis var. sinensis HOM05D007141 ORTHO05D008975 2.1e-06 54.3 28 78.6
HanXRQChr10g0309781 Helianthus annuus HOM05D007141 ORTHO05D008975 2.1e-06 54.3 28 75.0
Os09g0361700 Oryza sativa ssp. japonica HOM05D007141 ORTHO05D008975 2.1e-06 54.3 28 78.6
AUR62009107 Chenopodium quinoa HOM05D007141 ORTHO05D008975 2.7e-06 53.9 28 78.6
ECA234G1667 Erigeron canadensis HOM05D007141 ORTHO05D008975 2.7e-06 53.9 28 75.0
Hund03309 Selenicereus undatus HOM05D007141 ORTHO05D008975 2.7e-06 53.9 28 75.0
Cfa017995 Carpinus fangiana HOM05D007141 ORTHO05D008975 3.5e-06 53.5 24 87.5
Nitab4.5_0002797g0020 Nicotiana tabacum HOM05D007141 ORTHO05D008975 3.5e-06 53.5 28 75.0
Sp7g30850 Schrenkiella parvula HOM05D007141 ORTHO05D008975 3.5e-06 53.5 28 75.0
Sed0026589 Sechium edule HOM05D007141 ORTHO05D008975 3.5e-06 53.5 28 78.6
CARHR241130 Cardamine hirsuta HOM05D007141 ORTHO05D008975 4.6e-06 53.1 28 71.4
FvH4_2g31430 Fragaria vesca HOM05D007141 ORTHO05D008975 4.6e-06 53.1 28 78.6
Oeu034195.1 Olea europaea HOM05D007141 ORTHO05D008975 4.6e-06 53.1 28 71.4
Migut.A00104 Erythranthe guttata HOM05D007141 ORTHO05D008975 6.0e-06 52.8 28 75.0
Mapoly0108s0048 Marchantia polymorpha HOM05D007141 ORTHO05D008975 6.0e-06 52.8 31 67.7
vmacro17441 Vaccinium macrocarpon HOM05D007141 ORTHO05D008975 7.8e-06 52.4 28 71.4
vmacro22570 Vaccinium macrocarpon HOM05D007141 ORTHO05D008975 7.8e-06 52.4 28 71.4


User provided reference genes

Program Settings