Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.BG.264.p Acer truncatum HOM05D003201 ORTHO05D008914 8.9e-136 486.9 237 100.0
Ciclev10016172m.g Citrus clementina HOM05D003201 ORTHO05D008914 5.9e-95 351.3 269 67.7
CiPaw.07G210300 Carya illinoinensis HOM05D003201 ORTHO05D008914 3.2e-93 345.5 268 67.5
QL12p025722 Quercus lobata HOM05D003201 ORTHO05D008914 1.2e-92 343.6 268 65.3
Duzib084G1420 Durio zibethinus HOM05D003201 ORTHO05D008914 7.9e-92 340.9 275 64.7
Thecc.03G318200 Theobroma cacao HOM05D003201 ORTHO05D008914 3.9e-91 338.6 269 65.4
Gohir.D12G205000 Gossypium hirsutum HOM05D003201 ORTHO05D008914 1.5e-90 336.7 269 63.9
Cpa.g.sc30.52 Carica papaya HOM05D003201 ORTHO05D008914 2.0e-90 336.3 268 63.4
Gohir.A12G202300 Gossypium hirsutum HOM05D003201 ORTHO05D008914 4.3e-90 335.1 269 63.6
Gorai.008G219900 Gossypium raimondii HOM05D003201 ORTHO05D008914 9.7e-90 334.0 270 63.3
MD15G1105100 Malus domestica HOM05D003201 ORTHO05D008914 9.7e-90 334.0 269 62.5
Manes.02G219100 Manihot esculenta HOM05D003201 ORTHO05D008914 1.2e-87 327.0 269 63.9
GSVIVG01035604001 Vitis vinifera HOM05D003201 ORTHO05D008914 1.5e-87 326.6 269 63.2
CSS0009288 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008914 2.6e-87 325.9 270 63.7
CSS0050223 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008914 1.0e-86 323.9 270 63.3
MELO3C011176.2 Cucumis melo HOM05D003201 ORTHO05D008914 1.7e-86 323.2 267 60.3
Dinv37468 Davidia involucrata HOM05D003201 ORTHO05D008914 2.9e-86 322.4 212 73.6
Prupe.1G456900 Prunus persica HOM05D003201 ORTHO05D008914 2.9e-86 322.4 264 63.6
Aqoxy7G00979 Aquilegia oxysepala HOM05D003201 ORTHO05D008914 2.5e-85 319.3 274 60.9
FvH4_2g36540 Fragaria vesca HOM05D003201 ORTHO05D008914 5.5e-85 318.2 271 60.5
RcHm_v2.0_Chr6g0305311 Rosa chinensis HOM05D003201 ORTHO05D008914 5.5e-85 318.2 267 61.0
ClCG08G012570 Citrullus lanatus HOM05D003201 ORTHO05D008914 1.2e-84 317.0 267 59.2
FAN15G0760 Fragaria x ananassa HOM05D003201 ORTHO05D008914 2.1e-84 316.2 271 60.5
THA.LOC104811993 Tarenaya hassleriana HOM05D003201 ORTHO05D008914 2.1e-84 316.2 261 61.7
CANSAT54G1971 Cannabis sativa HOM05D003201 ORTHO05D008914 2.7e-84 315.8 268 60.4
CsaV3_2G031270 Cucumis sativus L. HOM05D003201 ORTHO05D008914 1.0e-83 313.9 271 58.7
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 3.0e-83 312.4 265 60.4
Actinidia29333 Actinidia chinensis HOM05D003201 ORTHO05D008914 3.9e-83 312.0 270 60.7
Hund03239 Selenicereus undatus HOM05D003201 ORTHO05D008914 5.1e-83 311.6 268 59.3
Lj1g0010900 Lotus japonicus HOM05D003201 ORTHO05D008914 6.7e-83 311.2 265 58.9
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 3.3e-82 308.9 264 61.0
Peaxi162Scf00314g00636 Petunia axillaris HOM05D003201 ORTHO05D008914 3.3e-82 308.9 269 59.5
Glyma.06G078200 Glycine max HOM05D003201 ORTHO05D008914 4.4e-82 308.5 265 58.1
TPR.G12401 Trifolium pratense HOM05D003201 ORTHO05D008914 7.4e-82 307.8 266 58.6
Thhalv10025951m.g Eutrema salsugineum HOM05D003201 ORTHO05D008914 1.3e-81 307.0 264 58.3
CAN.G964.23 Capsicum annuum HOM05D003201 ORTHO05D008914 1.7e-81 306.6 267 58.8
Nitab4.5_0000391g0210 Nicotiana tabacum HOM05D003201 ORTHO05D008914 3.7e-81 305.4 268 58.6
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 4.8e-81 305.1 265 60.4
DCAR_002183 Daucus carota HOM05D003201 ORTHO05D008914 6.3e-81 304.7 267 58.8
Psat5g023760 Pisum sativum HOM05D003201 ORTHO05D008914 6.3e-81 304.7 269 57.2
Lalb_Chr11g0064231 Lupinus albus HOM05D003201 ORTHO05D008914 8.2e-81 304.3 267 59.6
SGA_v2.0_scaffold45G16974 Striga asiatica HOM05D003201 ORTHO05D008914 1.1e-80 303.9 268 57.8
Nitab4.5_0012553g0020 Nicotiana tabacum HOM05D003201 ORTHO05D008914 1.8e-80 303.1 268 58.6
AT4G20325 Arabidopsis thaliana HOM05D003201 ORTHO05D008914 4.1e-80 302.0 264 58.7
Sp7g18670 Schrenkiella parvula HOM05D003201 ORTHO05D008914 7.0e-80 301.2 267 59.6
PGSC0003DMG402028340 Solanum tuberosum HOM05D003201 ORTHO05D008914 7.0e-80 301.2 269 58.0
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 9.1e-80 300.8 265 58.1
AL7G33570 Arabidopsis lyrata HOM05D003201 ORTHO05D008914 1.2e-79 300.4 264 59.1
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 1.5e-79 300.1 277 59.6
TWI18G0285 Tripterygium wilfordii HOM05D003201 ORTHO05D008914 1.5e-79 300.1 268 59.3
Glyma.04G077000 Glycine max HOM05D003201 ORTHO05D008914 2.0e-79 299.7 266 56.8
BcaNung03501 Brassica carinata HOM05D003201 ORTHO05D008914 2.6e-79 299.3 267 59.2
C07p50860 Brassica napus HOM05D000936 ORTHO05D008914 2.6e-79 299.3 267 59.2
Cc11_g12550 Coffea canephora HOM05D003201 ORTHO05D008914 3.5e-79 298.9 270 58.1
Carub.0007s2085 Capsella rubella HOM05D003201 ORTHO05D008914 4.5e-79 298.5 264 59.1
Eucgr.E04307 Eucalyptus grandis HOM05D003201 ORTHO05D008914 5.9e-79 298.1 269 59.1
Solyc05g012940.4 Solanum lycopersicum HOM05D003201 ORTHO05D008914 7.7e-79 297.7 269 56.5
BcaC06g30651 Brassica carinata HOM05D003201 ORTHO05D008914 1.3e-78 297.0 267 58.1
arahy.Tifrunner.gnm1.ann1.6BLG7S Arachis hypogaea HOM05D003201 ORTHO05D008914 1.7e-78 296.6 263 57.0
AUR62028026 Chenopodium quinoa HOM05D003201 ORTHO05D008914 1.7e-78 296.6 267 55.4
arahy.Tifrunner.gnm1.ann1.N5J460 Arachis hypogaea HOM05D003201 ORTHO05D008914 3.8e-78 295.4 263 56.7
Sopen05g007740 Solanum pennellii HOM05D003201 ORTHO05D008914 3.8e-78 295.4 269 56.5
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 8.5e-78 294.3 267 56.9
SalBow8G4280 Salvia bowleyana HOM05D003201 ORTHO05D008914 1.9e-77 293.1 269 55.0
CARHR227150 Cardamine hirsuta HOM05D003201 ORTHO05D008914 3.2e-77 292.4 267 57.7
BraA03t14319Z Brassica rapa HOM05D003201 ORTHO05D008914 5.5e-77 291.6 260 57.7
BolC7t45584H Brassica oleracea HOM05D000936 ORTHO05D008914 1.2e-76 290.4 267 57.3
EL10Ac8g19259 Beta vulgaris HOM05D003201 ORTHO05D008914 3.6e-76 288.9 267 56.6
Ca_15643_v3 Cicer arietinum L. HOM05D000163 ORTHO05D000219 6.1e-76 288.1 203 65.5
HanXRQChr15g0468831 Helianthus annuus HOM05D003201 ORTHO05D008914 8.0e-76 287.7 267 54.7
A03p52400 Brassica napus HOM05D000936 ORTHO05D008914 1.0e-75 287.3 267 56.6
Phvul.009G102800 Phaseolus vulgaris HOM05D003201 ORTHO05D008914 1.4e-75 287.0 196 67.9
Migut.E00069 Erythranthe guttata HOM05D003201 ORTHO05D008914 2.6e-74 282.7 269 55.8
PSO782G1293 Papaver somniferum HOM05D003201 ORTHO05D008914 3.3e-74 282.3 266 55.3
FAN20G1097 Fragaria x ananassa HOM05D000163 ORTHO05D008914 9.7e-74 280.8 252 58.7
ECA233G2337 Erigeron canadensis HOM05D004148 ORTHO05D004709 3.7e-73 278.9 256 55.1
PGR042G2091 Punica granatum HOM05D003201 ORTHO05D008914 4.1e-72 275.4 269 53.5
Rhsim07G0174100 Rhododendron simsii HOM05D003201 ORTHO05D008914 2.0e-71 273.1 363 45.2
VMungo1309G0938 Vigna mungo HOM05D003201 ORTHO05D008914 2.6e-71 272.7 338 45.3
BcaNung03722 Brassica carinata HOM05D000936 ORTHO05D001411 5.5e-69 265.0 267 53.6
Lsat_1_v5_gn_5_73181 Lactuca sativa HOM05D003201 ORTHO05D008914 2.7e-68 262.7 214 59.3
ATR0686G110 Amborella trichopoda HOM05D003201 ORTHO05D008914 1.8e-67 260.0 236 55.5
HPP92_024271 Vanilla planifolia HOM05D003201 ORTHO05D008914 3.0e-67 259.2 258 53.5
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 6.8e-67 258.1 255 56.1
Sc23g0004340 Simmondsia chinensis HOM05D003201 ORTHO05D008914 1.7e-65 253.4 196 63.3
AUR62020698 Chenopodium quinoa HOM05D003201 ORTHO05D008914 2.7e-60 236.1 267 47.2
SEGI_35572 Sequoiadendron giganteum HOM05D003201 ORTHO05D008914 1.5e-58 230.3 204 53.4
TAR636G2614 Trochodendron aralioides HOM05D003201 ORTHO05D008914 3.7e-57 225.7 148 75.0
Potri.006G281101 Populus trichocarpa HOM05D003201 ORTHO05D008914 4.5e-55 218.8 155 69.0
vmacro05085 Vaccinium macrocarpon HOM05D003201 ORTHO05D008914 1.1e-53 214.2 488 33.4
FAN27G2114 Fragaria x ananassa HOM05D000163 ORTHO05D000219 9.5e-53 211.1 217 54.4
Mapoly0037s0034 Marchantia polymorpha HOM05D003201 ORTHO05D008914 4.9e-49 198.7 220 44.5
Sed0017242 Sechium edule HOM05D003201 ORTHO05D008914 1.8e-48 196.8 182 57.1
Pp3c10_22770 Physcomitrium patens HOM05D003201 ORTHO05D008914 1.5e-45 187.2 193 43.5
AagrBONN_evm.TU.Sc2ySwM_344.2003 Anthoceros agrestis HOM05D003201 ORTHO05D008914 4.0e-43 179.1 177 48.0
unitig_32.g11042 Utricularia gibba HOM05D003201 ORTHO05D008914 1.5e-42 177.2 184 54.3
SMO115G0061 Selaginella moellendorffii HOM05D003201 ORTHO05D008914 3.4e-42 176.0 217 41.9
SHI31610 Sapria himalayana HOM05D003201 ORTHO05D008914 2.0e-39 166.8 109 67.9
Zm00001eb079750 Zea mays HOM05D003201 ORTHO05D008914 6.2e-36 155.2 188 45.7
MD08G1125300 Malus domestica HOM05D003201 ORTHO05D008914 6.4e-33 145.2 136 54.4
Nn7g38306 Nelumbo nucifera HOM05D003201 ORTHO05D008914 3.4e-26 122.9 93 64.5
COL.COLO4_10365 Corchorus olitorius HOM05D003201 ORTHO05D008914 2.1e-23 113.6 171 43.3
TPR.G12326 Trifolium pratense HOM05D003201 ORTHO05D008914 1.6e-20 104.0 76 64.5
CDE05G1961 Ceratophyllum demersum HOM05D003201 ORTHO05D008914 3.6e-20 102.8 140 42.1
Os04g0476400 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008914 6.2e-20 102.1 86 58.1
CBR_g23989 Chara braunii HOM05D003201 ORTHO05D008914 2.3e-14 83.6 69 50.7
Hma1.2p1_1357F.1_g277905 Hydrangea macrophylla HOM05D003201 ORTHO05D008914 3.0e-14 83.2 61 63.9
PRCOL_00004174 Prasinoderma coloniale HOM05D003201 ORTHO05D008914 3.0e-14 83.2 230 29.1
Cre07.g320800 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008914 1.1e-13 81.3 245 22.9
CBR_g23991 Chara braunii HOM05D003201 ORTHO05D008914 2.7e-07 60.1 47 53.2


User provided reference genes

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