Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.BG.256.p Acer truncatum HOM05D002744 ORTHO05D008989 5.1e-76 287.7 152 100.0
Ciclev10032836m.g Citrus clementina HOM05D002744 ORTHO05D008989 2.4e-65 252.3 154 86.4
CiPaw.02G197300 Carya illinoinensis HOM05D002744 ORTHO05D008989 1.6e-61 239.6 154 81.8
GSVIVG01032723001 Vitis vinifera HOM05D002744 ORTHO05D008989 2.7e-61 238.8 154 80.5
Gohir.A05G332500 Gossypium hirsutum HOM05D002744 ORTHO05D008989 1.0e-60 236.9 154 81.2
Gohir.D04G071200 Gossypium hirsutum HOM05D002744 ORTHO05D008989 1.0e-60 236.9 154 81.2
QL08p064284 Quercus lobata HOM05D002744 ORTHO05D008989 6.7e-60 234.2 154 80.5
Eucgr.G03110 Eucalyptus grandis HOM05D002744 ORTHO05D008989 8.7e-60 233.8 154 79.2
Dinv21809 Davidia involucrata HOM05D002744 ORTHO05D008989 1.1e-59 233.4 154 80.5
Thecc.10G007100 Theobroma cacao HOM05D002744 ORTHO05D008989 1.1e-59 233.4 154 80.5
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 1.5e-59 233.0 154 78.6
TWI38G2197 Tripterygium wilfordii HOM05D002744 ORTHO05D008989 1.5e-59 233.0 154 77.9
Hma1.2p1_1240F.1_g269640 Hydrangea macrophylla HOM05D002744 ORTHO05D008989 2.5e-59 232.3 154 79.2
CsaV3_5G010720 Cucumis sativus L. HOM05D002744 ORTHO05D008989 5.7e-59 231.1 154 78.6
Nitab4.5_0000928g0050 Nicotiana tabacum HOM05D002744 ORTHO05D008989 7.4e-59 230.7 153 79.7
Sed0024728 Sechium edule HOM05D002744 ORTHO05D008989 7.4e-59 230.7 154 78.6
Haze_17321 Corylus avellana HOM05D002744 ORTHO05D008989 1.3e-58 229.9 154 79.2
Sopen02g021690 Solanum pennellii HOM05D002744 ORTHO05D008989 1.3e-58 229.9 153 79.7
MD07G1229300 Malus domestica HOM05D002744 ORTHO05D008989 1.6e-58 229.6 154 77.3
Peaxi162Scf00284g00123 Petunia axillaris HOM05D002744 ORTHO05D008989 1.6e-58 229.6 153 79.7
Duzib114G0765 Durio zibethinus HOM05D002744 ORTHO05D008989 2.2e-58 229.2 154 77.9
Nitab4.5_0000263g0100 Nicotiana tabacum HOM05D002744 ORTHO05D008989 2.2e-58 229.2 153 79.1
Gorai.012G080100 Gossypium raimondii HOM05D002744 ORTHO05D008989 2.8e-58 228.8 164 76.2
RcHm_v2.0_Chr1g0371481 Rosa chinensis HOM05D002744 ORTHO05D008989 4.8e-58 228.0 154 77.3
Lju41C22T0 Lonicera japonica HOM05D002744 ORTHO05D008989 6.3e-58 227.6 154 79.2
Manes.10G008400 Manihot esculenta HOM05D002744 ORTHO05D008989 8.2e-58 227.3 154 75.3
arahy.Tifrunner.gnm1.ann1.HIE7A8 Arachis hypogaea HOM05D002744 ORTHO05D008989 1.1e-57 226.9 154 75.3
Lj8C58T1 Lonicera japonica HOM05D002744 ORTHO05D008989 1.8e-57 226.1 154 78.6
MD01G1161400 Malus domestica HOM05D002744 ORTHO05D008989 2.4e-57 225.7 154 76.6
Potri.008G075600 Populus trichocarpa HOM05D002744 ORTHO05D008989 3.1e-57 225.3 154 76.6
PGR142G3983 Punica granatum HOM05D002744 ORTHO05D008989 3.1e-57 225.3 154 76.0
CANSAT56G2966 Cannabis sativa HOM05D002744 ORTHO05D008989 4.1e-57 224.9 154 75.3
DCAR_011891 Daucus carota HOM05D002744 ORTHO05D008989 5.3e-57 224.6 150 77.3
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 6.9e-57 224.2 154 74.0
Sabra08G0056200 Salix brachista HOM05D002744 ORTHO05D008989 6.9e-57 224.2 154 76.6
arahy.Tifrunner.gnm1.ann1.N80L0Z Arachis hypogaea HOM05D002744 ORTHO05D008989 9.0e-57 223.8 153 74.5
arahy.Tifrunner.gnm1.ann1.B5C26Y Arachis hypogaea HOM05D002744 ORTHO05D008989 1.2e-56 223.4 153 74.5
HanXRQChr17g0560791 Helianthus annuus HOM05D002744 ORTHO05D008989 1.2e-56 223.4 154 73.4
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.0e-56 222.6 154 73.4
Nn2g11068 Nelumbo nucifera HOM05D002744 ORTHO05D008989 2.0e-56 222.6 153 76.5
EL10Ac2g04293 Beta vulgaris HOM05D002744 ORTHO05D008989 2.6e-56 222.2 154 73.4
Glyma.11G234700 Glycine max HOM05D002744 ORTHO05D008989 3.4e-56 221.9 154 75.3
Glyma.18G022300 Glycine max HOM05D002744 ORTHO05D008989 3.4e-56 221.9 154 75.3
FvH4_7g25501 Fragaria vesca HOM05D002744 ORTHO05D008989 4.5e-56 221.5 154 72.7
Actinidia00986 Actinidia chinensis HOM05D002744 ORTHO05D008989 5.9e-56 221.1 154 75.3
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 7.7e-56 220.7 153 74.5
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.0e-55 220.3 154 72.1
Thhalv10006252m.g Eutrema salsugineum HOM05D002744 ORTHO05D008989 2.9e-55 218.8 152 73.0
MSTRG.12212 Avicennia marina HOM05D002744 ORTHO05D008989 1.4e-54 216.5 154 72.7
AUR62022976 Chenopodium quinoa HOM05D002744 ORTHO05D008989 2.5e-54 215.7 153 71.9
Migut.A01076 Erythranthe guttata HOM05D002744 ORTHO05D008989 3.2e-54 215.3 154 71.4
Rhsim09G0182800 Rhododendron simsii HOM05D002744 ORTHO05D008989 4.2e-54 214.9 154 73.4
BcaB08g34630 Brassica carinata HOM05D002744 ORTHO05D008989 5.5e-54 214.5 152 71.7
AUR62012334 Chenopodium quinoa HOM05D002744 ORTHO05D008989 5.5e-54 214.5 153 70.6
Cc02_g05720 Coffea canephora HOM05D002744 ORTHO05D008989 5.5e-54 214.5 153 75.2
Sp5g06290 Schrenkiella parvula HOM05D002744 ORTHO05D008989 7.2e-54 214.2 152 71.7
Os03g0665800 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D008989 9.4e-54 213.8 154 70.1
Phvul.001G248100 Phaseolus vulgaris HOM05D002744 ORTHO05D008989 2.1e-53 212.6 154 70.1
VMungo1383G3724 Vigna mungo HOM05D002744 ORTHO05D008989 2.7e-53 212.2 154 70.1
A09p49190 Brassica napus HOM05D002744 ORTHO05D008989 3.6e-53 211.8 153 69.9
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 4.6e-53 211.5 154 73.4
Hund13513 Selenicereus undatus HOM05D002744 ORTHO05D008989 4.6e-53 211.5 154 69.5
Carub.0005s2299 Capsella rubella HOM05D002744 ORTHO05D008989 1.0e-52 210.3 152 68.4
BraA09t40372Z Brassica rapa HOM05D002744 ORTHO05D008989 1.4e-52 209.9 161 67.1
AT3G56210 Arabidopsis thaliana HOM05D002744 ORTHO05D008989 2.3e-52 209.1 151 68.9
AL5G37530 Arabidopsis lyrata HOM05D002744 ORTHO05D008989 3.0e-52 208.8 152 68.4
Lj6g0011522 Lotus japonicus HOM05D002744 ORTHO05D008989 3.0e-52 208.8 151 71.5
SalBow3G4547 Salvia bowleyana HOM05D002744 ORTHO05D008989 3.0e-52 208.8 154 70.1
THA.LOC104824346 Tarenaya hassleriana HOM05D002744 ORTHO05D008989 3.9e-52 208.4 152 69.1
CARHR166360 Cardamine hirsuta HOM05D002744 ORTHO05D008989 6.7e-52 207.6 152 67.8
ECA233G4001 Erigeron canadensis HOM05D002744 ORTHO05D008989 8.8e-52 207.2 154 70.1
Ca_15179_v3 Cicer arietinum L. HOM05D002744 ORTHO05D008989 1.5e-51 206.5 154 69.5
Lsat_1_v5_gn_8_13401 Lactuca sativa HOM05D002744 ORTHO05D008989 2.0e-51 206.1 150 71.3
PSO017G6389 Papaver somniferum HOM05D002744 ORTHO05D008989 2.6e-51 205.7 154 66.2
TPR.G28641 Trifolium pratense HOM05D002744 ORTHO05D008989 2.6e-51 205.7 154 70.1
Lalb_Chr08g0231351 Lupinus albus HOM05D002744 ORTHO05D008989 7.4e-51 204.1 154 69.5
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 9.7e-51 203.8 176 61.4
PSO170G0776 Papaver somniferum HOM05D002744 ORTHO05D008989 9.7e-51 203.8 154 65.6
vmacro09984 Vaccinium macrocarpon HOM05D002744 ORTHO05D008989 3.7e-50 201.8 188 60.1
Oeu026180.1 Olea europaea HOM05D002744 ORTHO05D008989 4.8e-50 201.4 137 76.6
Medtr3g072120 Medicago truncatula HOM05D002744 ORTHO05D008989 8.2e-50 200.7 154 67.5
HPP92_013966 Vanilla planifolia HOM05D002744 ORTHO05D008989 2.6e-48 195.7 153 66.7
ATR0681G046 Amborella trichopoda HOM05D000826 ORTHO05D008989 1.0e-47 193.7 149 67.8
SGA_v2.0_scaffold36G14267 Striga asiatica HOM05D002744 ORTHO05D008989 3.8e-47 191.8 153 69.3
Prupe.2G259500 Prunus persica HOM05D002744 ORTHO05D008989 2.7e-45 185.7 121 81.0
Lj1A963T49 Lonicera japonica HOM05D002744 ORTHO05D008989 6.1e-45 184.5 111 83.8
BcaB01g00016 Brassica carinata HOM05D002744 ORTHO05D008989 1.4e-44 183.3 152 63.8
BcaC07g39936 Brassica carinata HOM05D002744 ORTHO05D008989 3.9e-44 181.8 111 81.1
C08p31530 Brassica napus HOM05D002744 ORTHO05D008989 3.9e-44 181.8 111 81.1
unitig_32.g11706 Utricularia gibba HOM05D002744 ORTHO05D008989 1.5e-43 179.9 154 61.7
unitig_33.g30211 Utricularia gibba HOM05D002744 ORTHO05D008989 1.5e-43 179.9 154 61.7
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 2.6e-43 179.1 111 77.5
Hma1.2p1_1240F.1_g269630 Hydrangea macrophylla HOM05D002744 ORTHO05D008989 4.4e-43 178.3 111 81.1
EL10Ac2g04295 Beta vulgaris HOM05D002744 ORTHO05D008989 7.4e-43 177.6 111 78.4
PGSC0003DMG400010239 Solanum tuberosum HOM05D002744 ORTHO05D008989 2.2e-42 176.0 118 83.1
TAR369G0133 Trochodendron aralioides HOM05D000826 ORTHO05D001831 2.2e-42 176.0 111 78.4
ClCG07G004800 Citrullus lanatus HOM05D002744 ORTHO05D008989 2.8e-42 175.6 120 80.0
Solyc02g076790.4 Solanum lycopersicum HOM05D002744 ORTHO05D008989 2.8e-42 175.6 118 82.2
SEGI_09795 Sequoiadendron giganteum HOM05D002744 ORTHO05D008989 1.8e-41 172.9 148 61.5
CDE02G4284 Ceratophyllum demersum HOM05D002744 ORTHO05D008989 5.9e-40 167.9 101 79.2
BcaB01g00017 Brassica carinata HOM05D002744 ORTHO05D008989 1.3e-39 166.8 167 56.9
TAR623G0678 Trochodendron aralioides HOM05D002744 ORTHO05D008989 6.1e-37 157.9 116 76.7
BolC8t50775H Brassica oleracea HOM05D002744 ORTHO05D008989 1.0e-36 157.1 150 55.3
MELO3C020107.2 Cucumis melo HOM05D002744 ORTHO05D008989 8.8e-36 154.1 152 55.9
Aa31LG10G11120 Aethionema arabicum HOM05D002744 ORTHO05D008989 9.7e-35 150.6 117 65.8
SEGI_38813 Sequoiadendron giganteum HOM05D002744 ORTHO05D008989 4.1e-33 145.2 110 64.5
Hma1.2p1_0322F.1_g124790 Hydrangea macrophylla HOM05D002744 ORTHO05D008989 5.3e-33 144.8 148 54.7
Gohir.A10G240750 Gossypium hirsutum HOM05D002744 ORTHO05D008989 3.5e-32 142.1 116 67.2
Mapoly0001s0439 Marchantia polymorpha HOM05D002744 ORTHO05D008989 1.3e-26 123.6 145 49.7
CDE01G0559 Ceratophyllum demersum HOM05D002744 ORTHO05D008989 5.9e-24 114.8 136 50.0
Psat5g130160 Pisum sativum HOM05D002744 ORTHO05D008989 5.9e-24 114.8 70 80.0
Sc10g0002800 Simmondsia chinensis HOM05D002744 ORTHO05D008989 6.1e-21 104.8 99 58.6
Pp3c8_1670 Physcomitrium patens HOM05D002744 ORTHO05D008989 6.3e-18 94.7 100 48.0
SMO147G0318 Selaginella moellendorffii HOM05D002744 ORTHO05D008989 1.5e-11 73.6 148 36.5
C06p23580 Brassica napus HOM05D002744 ORTHO05D008989 1.8e-09 66.6 37 78.4
Psat5g125520 Pisum sativum HOM05D002744 ORTHO05D008989 3.9e-07 58.9 39 69.2


User provided reference genes

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