Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 7.2e-101 370.5 184 100.0
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 4.9e-97 357.8 185 96.8
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 4.9e-97 357.8 185 96.8
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 8.3e-97 357.1 185 96.2
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 1.1e-96 356.7 185 96.2
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 1.4e-96 356.3 185 96.2
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 2.4e-96 355.5 185 96.2
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 4.1e-96 354.8 185 96.2
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 4.1e-96 354.8 185 96.2
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 5.4e-96 354.4 185 95.7
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 5.4e-96 354.4 185 95.1
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 7.0e-96 354.0 185 94.6
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 9.2e-96 353.6 185 95.1
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 9.2e-96 353.6 185 95.7
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 9.2e-96 353.6 185 95.7
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 9.2e-96 353.6 185 95.1
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 9.2e-96 353.6 185 96.2
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 1.2e-95 353.2 185 94.6
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 1.6e-95 352.8 185 95.1
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 1.6e-95 352.8 185 95.7
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 1.6e-95 352.8 185 95.7
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 2.0e-95 352.4 185 95.1
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 2.0e-95 352.4 185 95.1
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 2.0e-95 352.4 185 95.1
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 2.0e-95 352.4 185 95.1
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 2.0e-95 352.4 185 95.1
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 2.0e-95 352.4 185 94.6
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 2.7e-95 352.1 185 95.7
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 2.7e-95 352.1 185 94.6
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 3.5e-95 351.7 185 95.1
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 5.9e-95 350.9 185 94.6
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 5.9e-95 350.9 185 94.6
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 5.9e-95 350.9 185 95.1
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 5.9e-95 350.9 185 94.6
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 5.9e-95 350.9 185 94.6
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 7.8e-95 350.5 185 94.6
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 1.0e-94 350.1 185 93.5
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 1.3e-94 349.7 185 94.1
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 1.3e-94 349.7 185 94.6
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 1.7e-94 349.4 185 94.1
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 2.3e-94 349.0 186 93.5
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 2.3e-94 349.0 185 93.5
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 2.9e-94 348.6 185 94.1
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 3.9e-94 348.2 185 93.5
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 3.9e-94 348.2 185 93.5
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 3.9e-94 348.2 185 93.5
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 5.0e-94 347.8 186 93.5
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 5.0e-94 347.8 185 91.9
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 5.0e-94 347.8 185 93.5
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 6.6e-94 347.4 185 94.1
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 6.6e-94 347.4 185 94.1
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 6.6e-94 347.4 185 94.1
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 8.6e-94 347.1 185 93.0
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 8.6e-94 347.1 185 93.0
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 1.1e-93 346.7 185 93.0
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 1.1e-93 346.7 185 91.9
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 1.1e-93 346.7 185 93.0
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 1.9e-93 345.9 185 91.9
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 2.5e-93 345.5 185 93.0
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 3.3e-93 345.1 185 91.4
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 4.3e-93 344.7 185 93.0
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 4.3e-93 344.7 185 93.0
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 5.6e-93 344.4 185 93.0
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 5.6e-93 344.4 185 90.8
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 7.3e-93 344.0 185 93.5
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 7.3e-93 344.0 185 92.4
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 2.8e-92 342.0 185 92.4
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 2.8e-92 342.0 185 92.4
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 3.6e-92 341.7 185 90.8
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 4.7e-92 341.3 185 91.9
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 4.7e-92 341.3 185 93.0
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 6.1e-92 340.9 185 92.4
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 6.1e-92 340.9 185 90.3
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 1.0e-91 340.1 185 91.4
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 1.0e-91 340.1 185 90.3
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 1.0e-91 340.1 185 90.3
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 1.0e-91 340.1 185 90.3
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 1.0e-91 340.1 185 90.3
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 1.0e-91 340.1 185 90.3
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 2.3e-91 339.0 185 89.7
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 3.1e-91 338.6 185 90.3
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 5.2e-91 337.8 185 89.2
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 6.8e-91 337.4 185 88.6
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 6.8e-91 337.4 185 89.2
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 6.8e-91 337.4 185 89.2
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 6.8e-91 337.4 185 90.8
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 6.8e-91 337.4 179 93.3
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 2.6e-90 335.5 185 88.6
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 3.4e-90 335.1 185 87.0
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 4.4e-90 334.7 187 90.9
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 7.5e-90 334.0 185 88.6
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 9.8e-90 333.6 185 88.6
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 9.8e-90 333.6 187 90.4
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 1.7e-89 332.8 185 88.1
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 1.7e-89 332.8 186 85.5
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 2.2e-89 332.4 194 86.1
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 3.7e-89 331.6 185 86.5
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 4.9e-89 331.3 186 84.9
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 1.1e-88 330.1 185 88.1
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.4e-88 329.7 185 90.8
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 3.2e-88 328.6 185 85.9
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 7.0e-88 327.4 185 87.0
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 1.6e-87 326.2 185 84.9
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 1.6e-87 326.2 185 88.1
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 2.7e-87 325.5 212 78.8
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 6.6e-86 320.9 185 89.7
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 6.6e-86 320.9 185 83.8
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 9.5e-85 317.0 217 77.4
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 9.8e-82 307.0 185 81.6
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 1.3e-81 306.6 185 80.0
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 3.7e-81 305.1 157 96.8
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 6.4e-81 304.3 157 96.2
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 1.1e-80 303.5 185 78.4
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 1.1e-80 303.5 185 78.4
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 5.4e-80 301.2 172 84.9
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 7.1e-80 300.8 157 95.5
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 3.5e-79 298.5 157 94.9
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 4.6e-79 298.1 185 77.3
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 1.0e-78 297.0 185 82.2
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 1.6e-76 289.7 157 91.1
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 2.9e-73 278.9 187 79.1
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 6.4e-73 277.7 184 73.9
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 4.7e-68 261.5 185 75.7
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 1.7e-62 243.0 185 70.3
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 6.6e-62 241.1 119 99.2
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 9.9e-58 227.3 311 45.7
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.7e-57 226.5 118 91.5
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 1.5e-53 213.4 154 66.9
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.2e-50 203.8 118 80.5
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 6.0e-39 164.9 91 84.6
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 1.1e-37 160.6 78 98.7
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 7.7e-26 121.3 69 87.0
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 7.7e-26 121.3 111 59.5
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 3.6e-23 112.5 62 79.0
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 4.1e-19 99.0 152 42.1
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 1.3e-17 94.0 122 50.0
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 1.6e-15 87.0 81 55.6
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 1.6e-15 87.0 45 86.7
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 1.5e-13 80.5 52 69.2
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 1.7e-12 77.0 79 50.6
Aa31LG9G12690 Aethionema arabicum HOM05D005468 ORTHO05D006789 5.0e-09 65.5 80 51.2
MD11G1104700 Malus domestica HOM05D005468 ORTHO05D006789 8.5e-09 64.7 42 73.8
ClCG05G019450 Citrullus lanatus HOM05D005468 ORTHO05D006789 8.0e-07 58.2 26 96.2


User provided reference genes

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