Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 5.4e-212 740.7 371 100.0
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 2.0e-158 562.8 379 78.1
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 6.3e-152 541.2 386 74.9
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 1.9e-148 529.6 379 74.7
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 1.9e-148 529.6 383 73.9
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 5.5e-148 528.1 378 74.3
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 3.5e-147 525.4 380 73.4
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.0e-146 523.9 380 73.2
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 1.3e-146 523.5 380 73.2
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.9e-145 519.6 380 72.9
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 1.9e-145 519.6 380 71.6
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 1.9e-145 519.6 378 72.8
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 8.2e-144 514.2 379 71.2
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 1.8e-143 513.1 380 73.7
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 1.4e-140 503.4 374 70.9
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 2.0e-137 493.0 385 68.6
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 7.4e-137 491.1 382 67.3
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 3.1e-135 485.7 390 67.2
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 3.4e-134 482.3 385 67.5
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 4.5e-134 481.9 382 67.5
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 1.3e-133 480.3 378 66.9
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 5.5e-132 474.9 387 66.9
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 3.6e-131 472.2 388 64.7
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 1.8e-130 469.9 380 66.1
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 3.9e-130 468.8 380 65.8
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 5.1e-130 468.4 379 66.2
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 6.7e-130 468.0 387 64.9
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 8.8e-130 467.6 378 65.1
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 3.3e-129 465.7 393 63.4
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 9.7e-129 464.2 382 63.4
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 2.8e-128 462.6 384 64.3
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 4.8e-128 461.8 386 64.0
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 1.1e-127 460.7 382 63.1
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 7.0e-127 458.0 395 64.1
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 3.5e-126 455.7 382 64.1
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 4.5e-126 455.3 387 62.5
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 1.3e-125 453.8 385 64.2
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 2.9e-125 452.6 405 60.0
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 2.9e-125 452.6 387 64.3
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 2.9e-125 452.6 387 64.9
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 1.1e-124 450.7 380 64.2
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 4.2e-124 448.7 407 60.0
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 5.5e-124 448.4 384 64.3
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 7.2e-124 448.0 385 64.2
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 7.2e-124 448.0 385 64.7
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 1.2e-123 447.2 387 61.5
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 3.6e-123 445.7 382 64.4
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 3.6e-123 445.7 379 62.8
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 4.7e-123 445.3 379 63.9
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 3.0e-122 442.6 391 61.1
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 1.7e-120 436.8 361 63.7
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 2.2e-120 436.4 394 62.2
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 6.3e-120 434.9 386 61.4
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 1.4e-119 433.7 390 61.0
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 9.1e-119 431.0 383 62.1
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 1.6e-118 430.3 379 61.5
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 1.0e-117 427.6 382 61.5
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 1.7e-117 426.8 381 61.2
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 2.9e-117 426.0 382 62.3
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 3.8e-117 425.6 379 61.2
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 4.2e-116 422.2 388 59.3
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 1.0e-114 417.5 392 59.2
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 2.3e-114 416.4 396 58.1
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 8.8e-114 414.5 386 59.1
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 8.8e-114 414.5 391 59.8
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 8.8e-114 414.5 391 58.3
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 1.5e-113 413.7 379 60.7
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 5.7e-113 411.8 379 60.2
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 7.5e-113 411.4 386 59.3
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 7.5e-113 411.4 390 58.2
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 2.8e-112 409.5 396 58.6
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 4.8e-112 408.7 385 57.1
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 1.1e-111 407.5 386 57.5
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 1.1e-111 407.5 378 59.5
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 3.1e-111 406.0 375 60.3
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 3.1e-111 406.0 386 58.3
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 4.1e-111 405.6 385 56.6
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 9.1e-111 404.4 331 65.9
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 1.1e-108 397.5 378 55.8
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 4.2e-108 395.6 347 62.8
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 3.0e-106 389.4 386 56.0
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 3.7e-104 382.5 385 55.8
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 3.7e-104 382.5 382 56.0
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 6.3e-104 381.7 401 54.9
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 2.4e-103 379.8 386 54.7
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.2e-102 377.5 389 55.0
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 2.7e-102 376.3 186 100.0
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 5.9e-102 375.2 375 55.7
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 1.3e-101 374.0 386 53.4
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 3.8e-101 372.5 385 54.3
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 3.3e-100 369.4 387 54.3
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 3.3e-100 369.4 339 60.2
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 5.6e-100 368.6 387 54.0
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 5.6e-100 368.6 388 51.8
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 1.2e-99 367.5 388 54.6
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 6.1e-99 365.2 388 52.1
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 2.3e-98 363.2 409 51.3
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 4.4e-97 359.0 312 60.6
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 2.9e-96 356.3 413 47.9
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 7.0e-95 351.7 381 53.3
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 7.8e-94 348.2 378 52.1
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 1.9e-92 343.6 409 49.9
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 6.2e-91 338.6 285 62.8
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 2.3e-90 336.7 360 54.7
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 2.6e-89 333.2 404 46.5
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 1.3e-88 330.9 382 50.0
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 1.3e-85 320.9 398 46.0
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 5.0e-85 318.9 380 49.2
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 6.6e-85 318.5 384 49.5
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 1.6e-83 313.9 379 51.2
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 6.2e-83 312.0 189 82.5
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 3.1e-82 309.7 402 46.8
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 8.9e-82 308.1 395 46.6
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 2.2e-80 303.5 398 45.5
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 5.4e-79 298.9 394 44.4
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 1.2e-78 297.7 378 47.9
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 8.6e-77 291.6 374 46.3
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 3.3e-76 289.7 397 44.1
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 4.3e-76 289.3 404 43.6
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 9.5e-76 288.1 226 66.8
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 3.6e-75 286.2 371 47.2
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 6.2e-75 285.4 371 47.2
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 1.2e-73 281.2 389 42.4
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 3.8e-72 276.2 358 43.3
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 4.1e-71 272.7 394 42.6
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 1.6e-70 270.8 403 39.5
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 2.1e-70 270.4 378 40.5
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 4.3e-68 262.7 355 44.8
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 4.9e-64 249.2 406 38.9
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 1.4e-63 247.7 194 63.9
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.9e-63 247.3 411 39.2
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 5.1e-61 239.2 402 38.1
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 1.5e-57 227.6 166 68.1
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 7.6e-57 225.3 377 39.5
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 2.5e-52 210.3 410 34.4
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.5e-52 210.3 408 37.3
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 3.6e-51 206.5 384 37.2
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 4.0e-50 203.0 414 34.3
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 1.3e-48 198.0 157 65.6
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 1.3e-48 198.0 157 65.6
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 2.4e-42 177.2 166 54.8
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 4.0e-42 176.4 431 31.6
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 3.4e-41 173.3 110 73.6
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 2.2e-40 170.6 164 53.0
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 5.5e-39 166.0 164 51.8
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 7.4e-36 155.6 160 46.2
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 1.6e-35 154.5 154 53.9
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 8.2e-35 152.1 376 32.4
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 1.3e-32 144.8 234 38.0
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 2.9e-32 143.7 240 42.9
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 2.9e-32 143.7 240 42.9
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 1.5e-28 131.3 238 38.2
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 3.1e-18 97.1 218 33.5
Glyma.15G095100 Glycine max HOM05D004702 ORTHO05D005505 6.1e-14 82.8 76 52.6
SEGI_40713 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 3.1e-10 70.5 110 32.7
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 5.3e-10 69.7 124 34.7


User provided reference genes

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