Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 3.9e-242 841.3 494 100.0
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 1.1e-196 690.3 507 76.5
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 4.4e-193 678.3 508 75.8
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 8.2e-192 674.1 508 75.4
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 8.2e-192 674.1 508 75.2
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 8.2e-192 674.1 507 75.1
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 8.2e-192 674.1 507 69.0
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 2.4e-191 672.5 507 71.4
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 4.1e-191 671.8 507 71.8
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 7.0e-191 671.0 507 68.6
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 5.9e-190 667.9 507 74.6
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 7.7e-190 667.5 507 74.0
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 3.8e-189 665.2 509 75.0
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 8.5e-189 664.1 507 68.6
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 1.9e-188 662.9 507 75.0
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 8.0e-187 657.5 507 67.5
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 1.8e-186 656.4 507 68.0
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 1.2e-185 653.7 507 77.1
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 7.5e-185 651.0 507 77.3
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 2.8e-184 649.0 507 72.0
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 4.8e-184 648.3 505 73.3
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 1.6e-182 643.3 507 66.7
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 2.0e-182 642.9 505 73.1
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 2.7e-182 642.5 508 71.7
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.2e-181 639.4 507 70.8
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 3.8e-181 638.6 507 69.8
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 1.5e-180 636.7 508 71.5
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 2.5e-180 636.0 507 68.4
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 3.6e-179 632.1 507 70.6
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 4.7e-179 631.7 508 70.1
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 6.1e-179 631.3 507 69.4
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 3.0e-178 629.0 507 69.4
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 4.0e-178 628.6 507 71.2
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 5.2e-178 628.2 507 66.5
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 6.8e-178 627.9 507 69.0
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.5e-177 626.7 510 70.0
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 2.0e-177 626.3 508 68.5
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 5.7e-177 624.8 507 68.8
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 7.5e-177 624.4 505 68.1
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 1.3e-176 623.6 507 65.9
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 3.7e-176 622.1 507 65.5
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 4.8e-176 621.7 507 69.8
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 1.1e-175 620.5 482 74.7
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 1.8e-175 619.8 508 69.5
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 2.4e-175 619.4 508 64.2
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 3.1e-175 619.0 507 63.7
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 3.1e-175 619.0 548 61.5
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 2.7e-174 615.9 507 64.3
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 5.9e-174 614.8 507 63.9
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 1.7e-173 613.2 505 64.8
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 1.7e-173 613.2 505 64.8
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 1.7e-173 613.2 508 64.4
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 3.8e-173 612.1 507 63.3
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 3.8e-173 612.1 502 63.5
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 5.0e-173 611.7 507 64.7
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 4.2e-172 608.6 508 61.8
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 7.2e-172 607.8 507 64.5
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 9.5e-172 607.4 462 69.3
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 1.2e-171 607.1 507 62.9
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 2.1e-171 606.3 502 62.9
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 6.1e-171 604.7 507 68.8
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 8.0e-171 604.4 507 63.3
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 1.0e-170 604.0 507 68.2
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 1.8e-170 603.2 504 62.5
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 2.3e-170 602.8 508 66.7
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 3.0e-170 602.4 462 68.0
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 6.8e-170 601.3 510 68.6
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 1.5e-169 600.1 507 63.3
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 2.6e-169 599.4 507 62.9
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 1.3e-168 597.0 507 62.3
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 1.3e-168 597.0 532 60.7
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 2.4e-167 592.8 504 65.7
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 2.7e-166 589.3 510 66.5
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 6.6e-165 584.7 486 67.7
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 4.3e-164 582.0 507 64.5
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 2.1e-163 579.7 507 62.1
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 3.6e-163 578.9 507 65.5
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 2.7e-158 562.8 488 65.0
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 3.0e-157 559.3 486 64.8
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 1.5e-156 557.0 508 63.4
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 1.5e-156 557.0 508 63.4
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 2.5e-156 556.2 510 61.6
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 3.9e-149 532.3 507 61.1
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 5.0e-149 531.9 507 60.9
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 8.6e-149 531.2 501 60.1
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 3.1e-146 522.7 504 55.8
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 1.6e-142 510.4 509 54.6
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 3.0e-133 479.6 507 57.0
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 9.6e-132 474.6 467 61.0
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 4.8e-123 445.7 469 51.6
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 4.0e-122 442.6 511 52.4
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 4.0e-122 442.6 346 68.5
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 5.4e-119 432.2 338 73.4
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.2e-118 431.0 404 59.4
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 2.1e-118 430.3 346 65.9
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 4.6e-118 429.1 338 67.2
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 5.1e-117 425.6 346 65.6
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 1.6e-115 420.6 511 52.3
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 6.4e-112 408.7 510 50.4
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 5.5e-111 405.6 306 66.7
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 1.1e-106 391.3 509 51.1
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 9.0e-106 388.3 332 61.4
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 2.6e-97 360.1 507 46.0
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 7.2e-87 325.5 380 50.3
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.3e-84 316.6 285 60.7
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 9.1e-82 308.5 206 75.2
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 1.7e-80 304.3 259 64.1
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.5e-73 279.6 206 69.9
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 4.2e-71 273.1 194 85.6
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.8e-67 260.4 174 71.8
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.3e-64 251.5 208 61.5
VMungo1309G0829 Vigna mungo HOM05D005390 ORTHO05D007086 1.0e-53 215.3 142 78.9
MBI11_g46067_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 6.8e-53 212.6 195 60.5
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 2.6e-52 210.7 160 82.5
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 3.4e-52 210.3 160 82.5
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 1.4e-50 204.9 334 39.8
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 2.0e-49 201.1 161 64.6
CARHR277060 Cardamine hirsuta HOM05D005390 ORTHO05D007086 5.0e-48 196.4 161 75.2
MBI11_g46351_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 6.6e-48 196.1 142 73.2
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.6e-41 174.9 123 68.3
CDE06G0744 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 6.0e-41 172.9 142 65.5
Hma1.2p1_2683F.1_g326890 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 1.9e-34 151.4 115 68.7
CsaV3_3G015410 Cucumis sativus L. HOM05D005390 ORTHO05D007086 1.7e-32 144.8 120 65.8
Nn1g03252 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.3e-32 144.4 93 77.4
Nn1g06247 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.8e-29 134.8 97 69.1
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.1e-26 123.6 85 67.1
Psat7g117320 Pisum sativum HOM05D005390 ORTHO05D004709 1.3e-24 118.6 89 67.4
Nn5g26726 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.9e-24 117.1 80 72.5
CDE06G2390 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 9.5e-23 112.5 109 56.0
RcHm_v2.0_Chr5g0027631 Rosa chinensis HOM05D005390 ORTHO05D007086 1.1e-21 109.0 169 46.2
Nn2g14552 Nelumbo nucifera HOM05D005390 ORTHO05D028071 2.0e-20 104.8 58 81.0
CAN.G1302.1 Capsicum annuum HOM05D005390 ORTHO05D002902 4.9e-19 100.1 78 57.7
RcHm_v2.0_Chr5g0027621 Rosa chinensis HOM05D005390 ORTHO05D007086 4.9e-19 100.1 78 65.4
CAN.G534.23 Capsicum annuum HOM05D005390 ORTHO05D007086 5.1e-16 90.1 69 59.4
CARHR043650 Cardamine hirsuta HOM05D005390 ORTHO05D007086 9.0e-13 79.3 56 73.2
A06p18430 Brassica napus HOM05D005390 ORTHO05D028071 3.4e-12 77.4 46 73.9
A09p53940 Brassica napus HOM05D005390 ORTHO05D028071 1.3e-11 75.5 46 71.7
BraA09t40810Z Brassica rapa HOM05D005390 ORTHO05D028071 1.3e-11 75.5 46 71.7
CAN.G755.13 Capsicum annuum HOM05D005390 ORTHO05D007086 3.8e-11 73.9 94 45.7
TAR381G0053 Trochodendron aralioides HOM05D000018 ORTHO05D001172 3.5e-09 67.4 83 43.4
Nn1g06248 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.6e-06 57.4 29 89.7


User provided reference genes

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