Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 9.4e-197 689.9 321 100.0
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 2.1e-180 635.6 322 90.7
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 6.1e-180 634.0 322 90.1
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 2.3e-179 632.1 322 89.1
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 2.3e-179 632.1 322 89.1
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 5.2e-179 630.9 322 89.4
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 8.9e-179 630.2 322 89.1
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 4.4e-178 627.9 322 88.5
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 9.8e-178 626.7 322 88.5
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 1.3e-177 626.3 322 88.8
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 8.3e-177 623.6 322 87.3
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 1.4e-176 622.9 322 88.2
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 1.4e-176 622.9 322 88.2
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 1.8e-176 622.5 322 87.9
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.8e-176 622.5 322 88.8
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 1.8e-176 622.5 322 88.5
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 3.1e-176 621.7 322 87.9
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 4.1e-176 621.3 322 88.8
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 5.4e-176 620.9 322 87.6
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 9.2e-176 620.2 322 87.9
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 9.2e-176 620.2 322 87.0
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 9.2e-176 620.2 322 87.6
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 9.2e-176 620.2 322 87.3
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 1.6e-175 619.4 322 87.0
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 2.0e-175 619.0 322 87.0
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 2.0e-175 619.0 322 87.9
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 2.7e-175 618.6 322 87.6
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 2.7e-175 618.6 322 86.0
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 3.5e-175 618.2 322 87.6
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 3.5e-175 618.2 322 87.6
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 3.5e-175 618.2 321 87.2
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 5.9e-175 617.5 322 87.0
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 1.0e-174 616.7 322 87.3
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 1.7e-174 615.9 322 85.7
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 1.7e-174 615.9 322 87.0
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 1.7e-174 615.9 322 87.0
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 2.3e-174 615.5 322 87.9
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 2.9e-174 615.1 322 86.6
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 2.9e-174 615.1 322 87.0
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 2.9e-174 615.1 322 87.0
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 5.0e-174 614.4 322 87.0
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 8.6e-174 613.6 322 87.0
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 1.1e-173 613.2 322 87.0
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 1.1e-173 613.2 322 87.0
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 1.1e-173 613.2 322 86.0
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 1.5e-173 612.8 322 85.4
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 1.9e-173 612.5 322 85.4
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 1.9e-173 612.5 322 86.0
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 1.9e-173 612.5 322 85.7
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 1.9e-173 612.5 322 86.0
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 1.9e-173 612.5 322 86.6
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 2.5e-173 612.1 322 87.0
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 2.5e-173 612.1 322 86.3
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 2.5e-173 612.1 322 85.7
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 3.3e-173 611.7 322 86.3
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 4.3e-173 611.3 322 86.0
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 4.3e-173 611.3 322 86.0
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 7.3e-173 610.5 322 85.7
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 7.3e-173 610.5 322 85.1
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 7.3e-173 610.5 322 86.0
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 9.5e-173 610.1 322 86.6
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 9.5e-173 610.1 322 85.4
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.2e-172 609.8 322 85.4
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 1.2e-172 609.8 322 86.3
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 1.2e-172 609.8 322 85.4
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 1.6e-172 609.4 322 84.8
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 1.6e-172 609.4 322 84.8
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.6e-172 609.4 319 85.6
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 2.1e-172 609.0 322 85.7
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 2.1e-172 609.0 322 85.4
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 2.1e-172 609.0 322 86.3
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 2.8e-172 608.6 322 84.5
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 2.8e-172 608.6 322 85.1
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 6.1e-172 607.4 322 86.0
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 1.0e-171 606.7 322 86.3
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 1.0e-171 606.7 322 86.3
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 1.4e-171 606.3 322 84.5
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.4e-171 606.3 322 86.0
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 1.4e-171 606.3 316 87.3
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 1.8e-171 605.9 322 84.8
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 1.8e-171 605.9 322 84.8
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 5.2e-171 604.4 322 85.7
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 5.2e-171 604.4 322 86.6
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 6.8e-171 604.0 316 86.1
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 8.9e-171 603.6 322 84.5
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 1.2e-170 603.2 321 82.9
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 1.2e-170 603.2 322 86.3
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 2.0e-170 602.4 322 84.8
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 2.0e-170 602.4 322 83.5
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 2.6e-170 602.1 322 84.2
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 3.4e-170 601.7 320 85.0
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 7.5e-170 600.5 322 84.2
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 1.3e-169 599.7 322 83.9
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 1.3e-169 599.7 322 84.2
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 1.3e-169 599.7 322 83.2
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 2.9e-169 598.6 323 83.9
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 6.4e-169 597.4 319 82.4
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 1.1e-168 596.7 323 83.3
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 1.1e-168 596.7 323 83.3
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 1.1e-168 596.7 323 83.3
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 1.4e-168 596.3 323 83.6
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 1.9e-168 595.9 320 84.1
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 5.4e-168 594.3 322 84.2
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 7.0e-168 594.0 323 83.3
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 1.2e-167 593.2 322 84.8
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 2.0e-167 592.4 322 83.5
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 2.7e-167 592.0 323 83.9
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 1.7e-166 589.3 322 82.6
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 2.3e-166 589.0 323 82.7
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 3.0e-166 588.6 323 82.4
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 3.0e-166 588.6 315 84.8
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 4.3e-165 584.7 316 82.3
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 6.2e-164 580.9 393 70.5
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 5.4e-160 567.8 323 82.0
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 1.2e-159 566.6 322 78.3
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 3.0e-158 562.0 288 87.8
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 5.0e-158 561.2 312 81.7
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 8.1e-156 553.9 288 87.5
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 3.1e-155 552.0 322 76.7
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 4.0e-155 551.6 288 86.5
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 1.7e-153 546.2 323 79.3
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 1.1e-152 543.5 322 75.5
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 7.1e-152 540.8 323 78.0
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 6.6e-150 534.3 316 78.8
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 3.6e-148 528.5 322 74.5
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 1.7e-145 519.6 285 81.8
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 1.6e-140 503.1 265 87.2
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 3.0e-134 482.3 321 66.7
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 6.2e-124 448.0 230 87.8
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 5.5e-120 434.9 285 68.1
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 2.5e-117 426.0 321 58.6
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 4.8e-116 421.8 281 74.0
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 1.1e-101 374.0 187 89.3
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.5e-101 373.6 318 51.3
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 4.3e-101 372.1 187 90.4
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 2.5e-96 356.3 186 84.4
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 2.7e-95 352.8 318 52.2
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.5e-85 320.5 320 46.6
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 4.0e-78 295.8 155 85.2
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 5.7e-69 265.4 136 88.2
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 2.1e-63 246.9 179 65.4
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 5.8e-53 212.2 109 88.1
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 1.1e-51 208.0 118 79.7
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 2.0e-50 203.8 119 75.6
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 3.6e-47 193.0 136 65.4
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 1.2e-45 188.0 127 70.1
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 9.6e-32 141.7 85 75.3
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.6e-31 141.0 85 75.3
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 8.1e-31 138.7 101 70.3
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 2.2e-28 130.6 81 71.6
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 6.9e-14 82.4 52 71.2


User provided reference genes

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