Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.BG.143.p Acer truncatum HOM05D007141 ORTHO05D008975 8.1e-14 79.0 34 100.0
Atru.BG.284.p Acer truncatum HOM05D007141 ORTHO05D008975 2.9e-11 70.5 34 94.1
Atru.BG.111.p Acer truncatum HOM05D007141 ORTHO05D008975 1.4e-10 68.2 34 88.2
Atru.chr7.1922 Acer truncatum HOM05D007141 ORTHO05D008975 1.2e-09 65.1 28 96.4
MD08G1066900 Malus domestica HOM05D007141 ORTHO05D008975 2.7e-09 63.9 28 92.9
Ciclev10010008m.g Citrus clementina HOM05D007141 ORTHO05D008975 3.5e-09 63.5 28 92.9
Thecc.09G058700 Theobroma cacao HOM05D007141 ORTHO05D008975 4.6e-09 63.2 28 89.3
TPR.G3578 Trifolium pratense HOM05D007141 ORTHO05D008975 6.0e-09 62.8 28 89.3
Prupe.1G407800 Prunus persica HOM05D007141 ORTHO05D008975 7.8e-09 62.4 28 89.3
Manes.16G083100 Manihot esculenta HOM05D007141 ORTHO05D008975 1.0e-08 62.0 28 89.3
MELO3C011470.2 Cucumis melo HOM05D007141 ORTHO05D008975 1.7e-08 61.2 29 86.2
CsaV3_6G032120 Cucumis sativus L. HOM05D007141 ORTHO05D008975 1.7e-08 61.2 29 86.2
Eucgr.C03070 Eucalyptus grandis HOM05D007141 ORTHO05D008975 2.3e-08 60.8 30 83.3
Psat5g035560 Pisum sativum HOM05D007141 ORTHO05D008975 2.3e-08 60.8 28 85.7
Potri.006G224400 Populus trichocarpa HOM05D007141 ORTHO05D008975 2.3e-08 60.8 28 89.3
Sabra06G0173500 Salix brachista HOM05D007141 ORTHO05D008975 2.3e-08 60.8 28 89.3
Sc09g0009950 Simmondsia chinensis HOM05D007141 ORTHO05D008975 2.3e-08 60.8 30 83.3
ATR0051G046 Amborella trichopoda HOM05D007141 ORTHO05D008975 3.0e-08 60.5 34 73.5
CANSAT25G2947 Cannabis sativa HOM05D007141 ORTHO05D008975 3.0e-08 60.5 28 82.1
Cc08_g11030 Coffea canephora HOM05D007141 ORTHO05D008975 3.0e-08 60.5 28 85.7
Medtr3g104730 Medicago truncatula HOM05D007141 ORTHO05D008975 3.0e-08 60.5 28 82.1
Eucgr.L02859 Eucalyptus grandis HOM05D007141 ORTHO05D008975 3.9e-08 60.1 28 85.7
CiPaw.15G035700 Carya illinoinensis HOM05D007141 ORTHO05D008975 5.1e-08 59.7 28 82.1
Gohir.D07G020900 Gossypium hirsutum HOM05D007141 ORTHO05D008975 5.1e-08 59.7 28 85.7
Gorai.001G021700 Gossypium raimondii HOM05D007141 ORTHO05D008975 5.1e-08 59.7 28 85.7
QL02p000427 Quercus lobata HOM05D007141 ORTHO05D008975 5.1e-08 59.7 28 85.7
GSVIVG01035422001 Vitis vinifera HOM05D007141 ORTHO05D008975 5.1e-08 59.7 28 82.1
Haze_18140 Corylus avellana HOM05D007141 ORTHO05D008975 6.6e-08 59.3 28 85.7
Duzib150G0643 Durio zibethinus HOM05D007141 ORTHO05D008975 6.6e-08 59.3 28 82.1
MD08G1067500 Malus domestica HOM05D007141 ORTHO05D008975 6.6e-08 59.3 28 82.1
MD09G1070200 Malus domestica HOM05D007141 ORTHO05D008975 6.6e-08 59.3 28 82.1
RcHm_v2.0_Chr6g0311391 Rosa chinensis HOM05D007141 ORTHO05D008975 6.6e-08 59.3 28 82.1
RcHm_v2.0_Chr7g0222241 Rosa chinensis HOM05D007141 ORTHO05D008975 6.6e-08 59.3 28 82.1
ClCG08G009990 Citrullus lanatus HOM05D000426 ORTHO05D000328 8.6e-08 58.9 28 85.7
A01p05100 Brassica napus HOM05D007141 ORTHO05D008975 1.1e-07 58.5 28 82.1
BraA01t00493Z Brassica rapa HOM05D007141 ORTHO05D008975 1.1e-07 58.5 28 82.1
MBI11_g07534_MAGBIO Magnolia biondii HOM05D007141 ORTHO05D008975 1.1e-07 58.5 28 78.6
arahy.Tifrunner.gnm1.ann1.L1P6F7 Arachis hypogaea HOM05D007141 ORTHO05D008975 1.5e-07 58.2 28 78.6
CSS0014882 Camellia sinensis var. sinensis HOM05D007141 ORTHO05D008975 1.5e-07 58.2 28 82.1
DCAR_003142 Daucus carota HOM05D007141 ORTHO05D008975 1.5e-07 58.2 28 82.1
Dinv12459 Davidia involucrata HOM05D007141 ORTHO05D008975 1.5e-07 58.2 28 82.1
Thhalv10026676m.g Eutrema salsugineum HOM05D007141 ORTHO05D008975 1.5e-07 58.2 28 78.6
Glyma.06G053600 Glycine max HOM05D007141 ORTHO05D008975 1.5e-07 58.2 28 78.6
Lj1g0005823 Lotus japonicus HOM05D007141 ORTHO05D008975 1.5e-07 58.2 28 82.1
Lalb_Chr08g0244921 Lupinus albus HOM05D007141 ORTHO05D008975 1.5e-07 58.2 28 78.6
Phvul.009G079400 Phaseolus vulgaris HOM05D007141 ORTHO05D008975 1.5e-07 58.2 28 78.6
TWI34G1430 Tripterygium wilfordii HOM05D007141 ORTHO05D008975 1.5e-07 58.2 28 82.1
Gohir.A07G021200 Gossypium hirsutum HOM05D007141 ORTHO05D008975 1.9e-07 57.8 28 82.1
PSO832G0110 Papaver somniferum HOM05D007141 ORTHO05D008975 1.9e-07 57.8 28 75.0
SalBow4G0322 Salvia bowleyana HOM05D007141 ORTHO05D008975 1.9e-07 57.8 28 78.6
VMungo1309G2876 Vigna mungo HOM05D007141 ORTHO05D008975 1.9e-07 57.8 28 78.6
AL7G18460 Arabidopsis lyrata HOM05D007141 ORTHO05D008975 2.5e-07 57.4 28 78.6
AT4G33100 Arabidopsis thaliana HOM05D007141 ORTHO05D008975 2.5e-07 57.4 28 78.6
BcaC09g52107 Brassica carinata HOM05D007141 ORTHO05D008975 2.5e-07 57.4 28 78.6
A08p17770 Brassica napus HOM05D007141 ORTHO05D008975 2.5e-07 57.4 28 78.6
C01p05580 Brassica napus HOM05D007141 ORTHO05D008975 2.5e-07 57.4 28 78.6
BolC1t00538H Brassica oleracea HOM05D007141 ORTHO05D008975 2.5e-07 57.4 28 78.6
BolC3t20976H Brassica oleracea HOM05D007141 ORTHO05D008975 2.5e-07 57.4 28 78.6
Carub.0007s0735 Capsella rubella HOM05D007141 ORTHO05D008975 2.5e-07 57.4 28 78.6
CDE07G1700 Ceratophyllum demersum HOM05D007141 ORTHO05D008975 2.5e-07 57.4 28 82.1
FAN15G0931 Fragaria x ananassa HOM05D007141 ORTHO05D008975 2.5e-07 57.4 28 82.1
FAN24G3331 Fragaria x ananassa HOM05D007141 ORTHO05D008975 2.5e-07 57.4 28 82.1
FAN27G0109 Fragaria x ananassa HOM05D007141 ORTHO05D008975 2.5e-07 57.4 28 82.1
C03p86820 Brassica napus HOM05D007141 ORTHO05D008975 3.3e-07 57.0 28 78.6
BraA08t33728Z Brassica rapa HOM05D007141 ORTHO05D008975 3.3e-07 57.0 28 78.6
SEGI_00789 Sequoiadendron giganteum HOM05D007141 ORTHO05D008975 3.3e-07 57.0 28 75.0
Aa31LG1G7350 Aethionema arabicum HOM05D007141 ORTHO05D008975 4.3e-07 56.6 28 78.6
Ah.10g034080 Amaranthus hybridus HOM05D007141 ORTHO05D008975 4.3e-07 56.6 28 75.0
Hma1.2p1_0644F.1_g194800 Hydrangea macrophylla HOM05D007141 ORTHO05D008975 4.3e-07 56.6 28 78.6
Hma1.2p1_1832F.1_g304585 Hydrangea macrophylla HOM05D007141 ORTHO05D008975 4.3e-07 56.6 28 78.6
Actinidia25707 Actinidia chinensis HOM05D007141 ORTHO05D008975 5.6e-07 56.2 28 82.1
CSS0018983 Camellia sinensis var. sinensis HOM05D007141 ORTHO05D008975 5.6e-07 56.2 28 78.6
HanXRQChr10g0309781 Helianthus annuus HOM05D007141 ORTHO05D008975 5.6e-07 56.2 28 75.0
ECA234G1667 Erigeron canadensis HOM05D007141 ORTHO05D008975 7.3e-07 55.8 28 75.0
CDE06G2239 Ceratophyllum demersum HOM05D007141 ORTHO05D008975 9.5e-07 55.5 28 78.6
Nitab4.5_0002797g0020 Nicotiana tabacum HOM05D007141 ORTHO05D008975 9.5e-07 55.5 28 75.0
Sp7g30850 Schrenkiella parvula HOM05D007141 ORTHO05D008975 9.5e-07 55.5 28 75.0
Sed0026589 Sechium edule HOM05D007141 ORTHO05D008975 9.5e-07 55.5 28 78.6
SEGI_38617 Sequoiadendron giganteum HOM05D007141 ORTHO05D008975 9.5e-07 55.5 28 75.0
BcaC09g52111 Brassica carinata HOM05D007141 ORTHO05D008975 1.2e-06 55.1 28 75.0
CARHR241130 Cardamine hirsuta HOM05D007141 ORTHO05D008975 1.2e-06 55.1 28 71.4
FvH4_2g31430 Fragaria vesca HOM05D007141 ORTHO05D008975 1.2e-06 55.1 28 78.6
Os09g0361700 Oryza sativa ssp. japonica HOM05D007141 ORTHO05D008975 1.2e-06 55.1 28 75.0
AUR62009107 Chenopodium quinoa HOM05D007141 ORTHO05D008975 1.6e-06 54.7 28 75.0
Migut.A00104 Erythranthe guttata HOM05D007141 ORTHO05D008975 1.6e-06 54.7 28 75.0
Hund03309 Selenicereus undatus HOM05D007141 ORTHO05D008975 1.6e-06 54.7 28 71.4
Atru.BG.261.p Acer truncatum HOM05D007141 ORTHO05D008975 2.1e-06 54.3 32 87.5
vmacro17441 Vaccinium macrocarpon HOM05D007141 ORTHO05D008975 2.1e-06 54.3 28 71.4
vmacro22570 Vaccinium macrocarpon HOM05D007141 ORTHO05D008975 2.1e-06 54.3 28 71.4
CAN.G1181.10 Capsicum annuum HOM05D007141 ORTHO05D008975 2.8e-06 53.9 28 71.4
Lsat_1_v5_gn_5_78660 Lactuca sativa HOM05D007141 ORTHO05D008975 2.8e-06 53.9 28 71.4
Oeu034195.1 Olea europaea HOM05D007141 ORTHO05D008975 2.8e-06 53.9 28 67.9
Mapoly0108s0048 Marchantia polymorpha HOM05D007141 ORTHO05D008975 3.6e-06 53.5 31 64.5
AUR62020564 Chenopodium quinoa HOM05D007141 ORTHO05D008975 6.2e-06 52.8 27 74.1
Rhsim05G0069200 Rhododendron simsii HOM05D007141 ORTHO05D008975 6.2e-06 52.8 28 71.4


User provided reference genes

Program Settings