Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.BG.132.p Acer truncatum HOM05D005997 ORTHO05D008323 1.0e-96 356.7 174 100.0
CiPaw.12G135200 Carya illinoinensis HOM05D005997 ORTHO05D008323 1.6e-86 322.8 174 86.8
Ciclev10009024m.g Citrus clementina HOM05D005997 ORTHO05D008323 2.8e-86 322.0 173 87.3
Potri.008G180300 Populus trichocarpa HOM05D005997 ORTHO05D008323 3.7e-86 321.6 174 87.4
Eucgr.F03518 Eucalyptus grandis HOM05D005997 ORTHO05D008323 4.8e-86 321.2 174 87.4
QL08p008622 Quercus lobata HOM05D005997 ORTHO05D008323 8.1e-86 320.5 174 87.9
Duzib213G0008 Durio zibethinus HOM05D005997 ORTHO05D008323 5.3e-85 317.8 174 83.9
Dinv40826 Davidia involucrata HOM05D005997 ORTHO05D008323 6.9e-85 317.4 174 86.8
Gohir.D01G072400 Gossypium hirsutum HOM05D005997 ORTHO05D008323 9.0e-85 317.0 174 86.2
Gohir.A01G086200 Gossypium hirsutum HOM05D005997 ORTHO05D008323 1.2e-84 316.6 174 85.6
Hma1.2p1_0036F.1_g022850 Hydrangea macrophylla HOM05D005997 ORTHO05D008323 1.2e-84 316.6 174 83.9
Cpa.g.sc12.206 Carica papaya HOM05D005997 ORTHO05D008323 2.0e-84 315.8 174 85.6
FAN25G0611 Fragaria x ananassa HOM05D005997 ORTHO05D008323 2.6e-84 315.5 173 86.1
RcHm_v2.0_Chr5g0042111 Rosa chinensis HOM05D005997 ORTHO05D008323 2.6e-84 315.5 173 85.0
FvH4_3g23860 Fragaria vesca HOM05D005997 ORTHO05D008323 3.4e-84 315.1 173 85.5
Gorai.002G095400 Gossypium raimondii HOM05D005997 ORTHO05D008323 4.5e-84 314.7 174 85.1
RcHm_v2.0_Chr5g0042181 Rosa chinensis HOM05D005997 ORTHO05D008323 4.5e-84 314.7 173 85.0
Sabra08G0137600 Salix brachista HOM05D005997 ORTHO05D008323 4.5e-84 314.7 174 85.6
FAN21G1688 Fragaria x ananassa HOM05D005997 ORTHO05D008323 5.8e-84 314.3 173 85.0
TAR624G0829 Trochodendron aralioides HOM05D005997 ORTHO05D008323 5.8e-84 314.3 174 85.1
Lj6g0009736 Lotus japonicus HOM05D005997 ORTHO05D008323 3.8e-83 311.6 171 85.4
Thecc.07G024000 Theobroma cacao HOM05D005997 ORTHO05D008323 4.9e-83 311.2 174 83.9
PGR044G2356 Punica granatum HOM05D005997 ORTHO05D008323 1.4e-82 309.7 174 83.9
COL.COLO4_09766 Corchorus olitorius HOM05D005997 ORTHO05D008323 1.9e-82 309.3 174 82.8
TWI38G0893 Tripterygium wilfordii HOM05D005997 ORTHO05D008323 2.4e-82 308.9 173 83.2
Solyc07g065180.3 Solanum lycopersicum HOM05D005997 ORTHO05D008323 9.3e-82 307.0 173 83.8
Sopen07g033400 Solanum pennellii HOM05D005997 ORTHO05D008323 9.3e-82 307.0 173 83.8
Ca_20142_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 1.2e-81 306.6 171 83.6
Ca_20145_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 1.2e-81 306.6 171 83.6
Nitab4.5_0010102g0010 Nicotiana tabacum HOM05D005997 ORTHO05D008323 1.6e-81 306.2 173 82.7
VMungo0540G2314 Vigna mungo HOM05D005997 ORTHO05D008323 1.6e-81 306.2 171 83.6
Actinidia00103 Actinidia chinensis HOM05D005997 ORTHO05D008323 2.1e-81 305.8 174 81.6
PGSC0003DMG400022292 Solanum tuberosum HOM05D005997 ORTHO05D008323 2.7e-81 305.4 173 83.8
CANSAT11G0206 Cannabis sativa HOM05D005997 ORTHO05D008323 3.5e-81 305.1 173 83.8
TPR.G1907 Trifolium pratense HOM05D005997 ORTHO05D008323 6.0e-81 304.3 171 84.2
arahy.Tifrunner.gnm1.ann1.N1CS9Q Arachis hypogaea HOM05D005997 ORTHO05D008323 7.9e-81 303.9 171 81.9
Manes.03G134100 Manihot esculenta HOM05D005997 ORTHO05D008323 7.9e-81 303.9 173 82.1
Os03g0587100 Oryza sativa ssp. japonica HOM05D005997 ORTHO05D008323 7.9e-81 303.9 174 78.7
vmacro11568 Vaccinium macrocarpon HOM05D005997 ORTHO05D008323 7.9e-81 303.9 173 80.9
Nitab4.5_0001160g0200 Nicotiana tabacum HOM05D005997 ORTHO05D008323 1.3e-80 303.1 173 82.7
Phvul.006G051400 Phaseolus vulgaris HOM05D005997 ORTHO05D008323 1.3e-80 303.1 171 82.5
Psat5g172000 Pisum sativum HOM05D005997 ORTHO05D008323 1.8e-80 302.8 173 81.5
Rhsim06G0225700 Rhododendron simsii HOM05D005997 ORTHO05D008323 1.8e-80 302.8 173 81.5
Cc05_g14560 Coffea canephora HOM05D005997 ORTHO05D008323 3.0e-80 302.0 173 81.5
Psat5g171680 Pisum sativum HOM05D005997 ORTHO05D008323 3.9e-80 301.6 173 81.5
Prupe.4G230500 Prunus persica HOM05D005997 ORTHO05D008323 3.9e-80 301.6 174 82.8
arahy.Tifrunner.gnm1.ann1.JACZ02 Arachis hypogaea HOM05D005997 ORTHO05D008323 6.7e-80 300.8 170 81.2
SalBow8G0955 Salvia bowleyana HOM05D005997 ORTHO05D008323 6.7e-80 300.8 172 82.6
Aqoxy1G04030 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 8.7e-80 300.4 174 81.0
Migut.M01687 Erythranthe guttata HOM05D005997 ORTHO05D008323 8.7e-80 300.4 173 80.3
Nn1g03269 Nelumbo nucifera HOM05D005997 ORTHO05D008323 8.7e-80 300.4 171 80.7
GSVIVG01037764001 Vitis vinifera HOM05D005997 ORTHO05D008323 8.7e-80 300.4 174 81.0
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 1.1e-79 300.1 173 79.8
Medtr3g055920 Medicago truncatula HOM05D005997 ORTHO05D008323 1.5e-79 299.7 171 83.6
Glyma.08G325100 Glycine max HOM05D005997 ORTHO05D008323 1.9e-79 299.3 171 81.9
MSTRG.6975 Avicennia marina HOM05D005997 ORTHO05D008323 9.6e-79 297.0 173 80.9
SGA_v2.0_scaffold168G38522 Striga asiatica HOM05D005997 ORTHO05D008323 1.6e-78 296.2 170 80.0
Sed0012266 Sechium edule HOM05D005997 ORTHO05D008323 2.1e-78 295.8 173 79.2
CAN.G337.36 Capsicum annuum HOM05D005997 ORTHO05D008323 2.8e-78 295.4 173 80.3
Lalb_Chr06g0174051 Lupinus albus HOM05D005997 ORTHO05D008323 2.8e-78 295.4 171 79.5
DCAR_022603 Daucus carota HOM05D005997 ORTHO05D008323 3.7e-78 295.0 174 77.6
PGR031G3624 Punica granatum HOM05D005997 ORTHO05D008323 4.8e-78 294.7 170 81.2
CsaV3_7G018710 Cucumis sativus L. HOM05D005997 ORTHO05D008323 6.2e-78 294.3 173 77.5
MD11G1206400 Malus domestica HOM05D005997 ORTHO05D008323 8.2e-78 293.9 174 81.6
Zm00001eb049320 Zea mays HOM05D005997 ORTHO05D008323 8.2e-78 293.9 174 78.2
BraA06t23516Z Brassica rapa HOM05D005997 ORTHO05D008323 1.1e-77 293.5 174 79.3
ClCG09G021010 Citrullus lanatus HOM05D005997 ORTHO05D008323 1.1e-77 293.5 173 77.5
Sc07g0002940 Simmondsia chinensis HOM05D005997 ORTHO05D008323 1.1e-77 293.5 173 78.6
Thhalv10011693m.g Eutrema salsugineum HOM05D005997 ORTHO05D008323 2.4e-77 292.4 174 78.2
PSO302G0218 Papaver somniferum HOM05D005997 ORTHO05D008323 4.0e-77 291.6 174 78.2
AL1G58220 Arabidopsis lyrata HOM05D005997 ORTHO05D008323 9.0e-77 290.4 174 78.2
AT1G50575 Arabidopsis thaliana HOM05D005997 ORTHO05D008323 1.2e-76 290.0 174 77.0
AUR62015935 Chenopodium quinoa HOM05D005997 ORTHO05D008323 1.2e-76 290.0 174 75.9
THA.LOC104826490 Tarenaya hassleriana HOM05D005997 ORTHO05D008323 1.2e-76 290.0 173 79.2
A06p03040 Brassica napus HOM05D005997 ORTHO05D008323 2.0e-76 289.3 174 77.6
Carub.0001s3961 Capsella rubella HOM05D005997 ORTHO05D008323 3.4e-76 288.5 173 78.0
Aa31LG10G3760 Aethionema arabicum HOM05D005997 ORTHO05D008323 5.8e-76 287.7 173 77.5
Oeu019619.1 Olea europaea HOM05D005997 ORTHO05D008323 5.8e-76 287.7 173 79.2
PSO210G1255 Papaver somniferum HOM05D005997 ORTHO05D008323 7.6e-76 287.3 174 76.4
CARHR040570 Cardamine hirsuta HOM05D005997 ORTHO05D008323 1.0e-75 287.0 174 76.4
Sp1g37390 Schrenkiella parvula HOM05D005997 ORTHO05D008323 1.0e-75 287.0 172 77.9
BcaC08g43226 Brassica carinata HOM05D005997 ORTHO05D008323 1.3e-75 286.6 174 76.4
C06p05740 Brassica napus HOM05D005997 ORTHO05D008323 1.3e-75 286.6 174 76.4
BolC6t35684H Brassica oleracea HOM05D005997 ORTHO05D008323 1.3e-75 286.6 174 76.4
AUR62040674 Chenopodium quinoa HOM05D005997 ORTHO05D008323 2.2e-75 285.8 173 75.7
ATR0712G169 Amborella trichopoda HOM05D005997 ORTHO05D008323 3.8e-75 285.0 174 74.1
BcaB07g33491 Brassica carinata HOM05D005997 ORTHO05D008323 6.5e-75 284.3 174 75.9
MBI16_g42314_MAGBIO Magnolia biondii HOM05D005997 ORTHO05D008323 1.6e-73 279.6 161 81.4
EL10Ac4g07628 Beta vulgaris HOM05D005997 ORTHO05D008323 3.5e-73 278.5 173 75.7
SEGI_04256 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 1.0e-72 276.9 173 73.4
Lj1C884G3 Lonicera japonica HOM05D005997 ORTHO05D008323 1.1e-71 273.5 160 80.6
Lsat_1_v5_gn_7_114661 Lactuca sativa HOM05D005997 ORTHO05D008323 2.4e-69 265.8 155 80.6
SMO196G0283 Selaginella moellendorffii HOM05D005997 ORTHO05D008323 1.3e-67 260.0 171 69.6
AagrBONN_evm.TU.Sc2ySwM_362.871 Anthoceros agrestis HOM05D005997 ORTHO05D008323 7.2e-66 254.2 173 69.4
Haze_09774 Corylus avellana HOM05D005997 ORTHO05D008323 3.9e-64 248.4 174 72.4
unitig_899.g15278 Utricularia gibba HOM05D005997 ORTHO05D008323 2.5e-63 245.7 143 79.0
Peaxi162Scf00047g00845 Petunia axillaris HOM05D005997 ORTHO05D008323 1.9e-58 229.6 173 67.1
Pp3c14_23810 Physcomitrium patens HOM05D005997 ORTHO05D008323 3.2e-58 228.8 170 61.2
CDE07G1873 Ceratophyllum demersum HOM05D005997 ORTHO05D008323 1.4e-56 223.4 130 80.8
MELO3C024895.2 Cucumis melo HOM05D005997 ORTHO05D008323 3.3e-55 218.8 128 81.2
Glyma.18G084600 Glycine max HOM05D005997 ORTHO05D008323 1.5e-52 209.9 135 78.5
CSS0016170 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 2.5e-50 202.6 115 81.7
CSS0047434 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 7.2e-50 201.1 115 80.9
Atru.chr7.2351 Acer truncatum HOM05D005997 ORTHO05D008323 3.1e-45 185.7 126 77.0
Atru.chr7.2230 Acer truncatum HOM05D005997 ORTHO05D008323 4.1e-45 185.3 97 93.8
Cfa020073 Carpinus fangiana HOM05D005997 ORTHO05D008323 5.9e-44 181.4 104 83.7
PRCOL_00002636 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 6.3e-38 161.4 176 50.6
MCO09G728 Micromonas commoda HOM05D004293 ORTHO05D005044 1.3e-35 153.7 172 43.6
arahy.Tifrunner.gnm1.ann1.D6FGWZ Arachis hypogaea HOM05D005997 ORTHO05D008323 1.7e-35 153.3 90 80.0
Cre01.g039850 Chlamydomonas reinhardtii HOM05D005997 ORTHO05D005044 2.9e-35 152.5 174 43.7
MCO11G065 Micromonas commoda HOM05D004293 ORTHO05D005044 5.0e-35 151.8 172 43.0
PRCOL_00000116 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 1.8e-32 143.3 172 44.2
Prupe.4G230300 Prunus persica HOM05D005997 ORTHO05D008323 5.7e-31 138.3 106 67.0
Dinv10299 Davidia involucrata HOM05D005997 ORTHO05D008323 1.0e-27 127.5 63 88.9
HPP92_007350 Vanilla planifolia HOM05D005997 ORTHO05D008323 1.3e-27 127.1 90 68.9
QL08p004262 Quercus lobata HOM05D005997 ORTHO05D008323 1.5e-23 113.6 119 56.3
QL08p058329 Quercus lobata HOM05D005997 ORTHO05D008323 1.5e-23 113.6 119 56.3
QL05p025044 Quercus lobata HOM05D005997 ORTHO05D008323 2.2e-22 109.8 119 55.5
SEGI_34153 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 1.1e-21 107.5 61 78.7
Aqoxy1G04027 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 5.4e-21 105.1 63 71.4
CSS0025804 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 2.3e-19 99.8 50 88.0
CSS0048391 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 2.3e-19 99.8 50 88.0
CSS0044071 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.9e-18 96.7 56 80.4
QL08p004281 Quercus lobata HOM05D005997 ORTHO05D007626 8.9e-16 87.8 113 50.4
CSS0025137 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.5e-15 87.0 50 80.0
QL08p004325 Quercus lobata HOM05D005997 ORTHO05D337094 1.8e-13 80.1 112 47.3
QL11p054366 Quercus lobata HOM05D005997 ORTHO05D338109 1.8e-13 80.1 112 47.3
Lsat_1_v5_gn_8_39280 Lactuca sativa HOM05D005997 ORTHO05D230963 4.7e-09 65.5 48 62.5
Rhsim03G0100400 Rhododendron simsii HOM05D005997 ORTHO05D338268 8.0e-09 64.7 43 69.8
arahy.Tifrunner.gnm1.ann1.U3B0HF Arachis hypogaea HOM05D003842 ORTHO05D026908 2.3e-08 63.2 36 83.3
QL08p058354 Quercus lobata HOM05D005997 ORTHO05D007626 5.8e-07 58.5 106 40.6
QL08p004656 Quercus lobata HOM05D005997 ORTHO05D337365 9.8e-07 57.8 35 74.3
arahy.Tifrunner.gnm1.ann1.EBVM73 Arachis hypogaea HOM05D005997 ORTHO05D004267 3.7e-06 55.8 28 85.7


User provided reference genes

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