Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.BG.111.p Acer truncatum HOM05D007141 ORTHO05D008975 1.8e-33 145.2 66 100.0
Atru.chr7.1922 Acer truncatum HOM05D007141 ORTHO05D008975 8.8e-25 116.3 67 82.1
Ciclev10010008m.g Citrus clementina HOM05D007141 ORTHO05D008975 5.0e-20 100.5 65 72.3
Gohir.D07G020900 Gossypium hirsutum HOM05D007141 ORTHO05D008975 6.6e-20 100.1 68 72.1
Gorai.001G021700 Gossypium raimondii HOM05D007141 ORTHO05D008975 6.6e-20 100.1 68 72.1
Thecc.09G058700 Theobroma cacao HOM05D007141 ORTHO05D008975 6.6e-20 100.1 69 69.6
Potri.006G224400 Populus trichocarpa HOM05D007141 ORTHO05D008975 1.1e-19 99.4 68 70.6
Sabra06G0173500 Salix brachista HOM05D007141 ORTHO05D008975 1.1e-19 99.4 68 70.6
Gohir.A07G021200 Gossypium hirsutum HOM05D007141 ORTHO05D008975 2.5e-19 98.2 68 70.6
Haze_18140 Corylus avellana HOM05D007141 ORTHO05D008975 5.5e-19 97.1 62 72.6
Duzib150G0643 Durio zibethinus HOM05D007141 ORTHO05D008975 9.5e-19 96.3 69 66.7
Prupe.1G407800 Prunus persica HOM05D007141 ORTHO05D008975 9.5e-19 96.3 54 75.9
Eucgr.C03070 Eucalyptus grandis HOM05D007141 ORTHO05D008975 2.1e-18 95.1 59 69.5
Manes.16G083100 Manihot esculenta HOM05D007141 ORTHO05D008975 2.1e-18 95.1 65 67.7
Sc09g0009950 Simmondsia chinensis HOM05D007141 ORTHO05D008975 2.1e-18 95.1 51 78.4
GSVIVG01035422001 Vitis vinifera HOM05D007141 ORTHO05D008975 2.1e-18 95.1 47 83.0
SalBow4G0322 Salvia bowleyana HOM05D007141 ORTHO05D008975 2.8e-18 94.7 66 68.2
TWI34G1430 Tripterygium wilfordii HOM05D007141 ORTHO05D008975 2.8e-18 94.7 55 72.7
Cc08_g11030 Coffea canephora HOM05D007141 ORTHO05D008975 4.7e-18 94.0 66 68.2
MD08G1066900 Malus domestica HOM05D007141 ORTHO05D008975 6.1e-18 93.6 54 74.1
A08p17770 Brassica napus HOM05D007141 ORTHO05D008975 8.0e-18 93.2 47 85.1
BolC3t20976H Brassica oleracea HOM05D007141 ORTHO05D008975 8.0e-18 93.2 47 85.1
QL02p000427 Quercus lobata HOM05D007141 ORTHO05D008975 8.0e-18 93.2 58 72.4
C03p86820 Brassica napus HOM05D007141 ORTHO05D008975 1.0e-17 92.8 47 85.1
BraA08t33728Z Brassica rapa HOM05D007141 ORTHO05D008975 1.0e-17 92.8 47 85.1
CSS0014882 Camellia sinensis var. sinensis HOM05D007141 ORTHO05D008975 1.0e-17 92.8 59 71.2
Oeu034195.1 Olea europaea HOM05D007141 ORTHO05D008975 1.0e-17 92.8 65 61.5
Eucgr.L02859 Eucalyptus grandis HOM05D007141 ORTHO05D008975 1.4e-17 92.4 59 72.9
Glyma.06G053600 Glycine max HOM05D007141 ORTHO05D008975 1.4e-17 92.4 53 73.6
RcHm_v2.0_Chr6g0311391 Rosa chinensis HOM05D007141 ORTHO05D008975 1.4e-17 92.4 53 73.6
Thhalv10026676m.g Eutrema salsugineum HOM05D007141 ORTHO05D008975 1.8e-17 92.0 47 83.0
Phvul.009G079400 Phaseolus vulgaris HOM05D007141 ORTHO05D008975 2.3e-17 91.7 53 73.6
RcHm_v2.0_Chr7g0222241 Rosa chinensis HOM05D007141 ORTHO05D008975 2.3e-17 91.7 47 80.9
AL7G18460 Arabidopsis lyrata HOM05D007141 ORTHO05D008975 3.0e-17 91.3 47 83.0
AT4G33100 Arabidopsis thaliana HOM05D007141 ORTHO05D008975 3.0e-17 91.3 47 83.0
Carub.0007s0735 Capsella rubella HOM05D007141 ORTHO05D008975 3.0e-17 91.3 47 83.0
arahy.Tifrunner.gnm1.ann1.L1P6F7 Arachis hypogaea HOM05D007141 ORTHO05D008975 4.0e-17 90.9 50 74.0
CSS0018983 Camellia sinensis var. sinensis HOM05D007141 ORTHO05D008975 4.0e-17 90.9 59 69.5
MD08G1067500 Malus domestica HOM05D007141 ORTHO05D008975 4.0e-17 90.9 54 72.2
MD09G1070200 Malus domestica HOM05D007141 ORTHO05D008975 4.0e-17 90.9 54 72.2
Rhsim05G0069200 Rhododendron simsii HOM05D007141 ORTHO05D008975 4.0e-17 90.9 66 65.2
ATR0051G046 Amborella trichopoda HOM05D007141 ORTHO05D008975 5.2e-17 90.5 51 74.5
FAN15G0931 Fragaria x ananassa HOM05D007141 ORTHO05D008975 8.9e-17 89.7 47 80.9
FAN24G3331 Fragaria x ananassa HOM05D007141 ORTHO05D008975 8.9e-17 89.7 47 80.9
FAN27G0109 Fragaria x ananassa HOM05D007141 ORTHO05D008975 8.9e-17 89.7 47 80.9
PSO832G0110 Papaver somniferum HOM05D007141 ORTHO05D008975 8.9e-17 89.7 53 69.8
Hund03309 Selenicereus undatus HOM05D007141 ORTHO05D008975 8.9e-17 89.7 54 72.2
VMungo1309G2876 Vigna mungo HOM05D007141 ORTHO05D008975 8.9e-17 89.7 53 73.6
CANSAT25G2947 Cannabis sativa HOM05D007141 ORTHO05D008975 1.2e-16 89.4 57 68.4
CARHR241130 Cardamine hirsuta HOM05D007141 ORTHO05D008975 1.2e-16 89.4 49 75.5
Sp7g30850 Schrenkiella parvula HOM05D007141 ORTHO05D008975 1.2e-16 89.4 47 80.9
Dinv12459 Davidia involucrata HOM05D007141 ORTHO05D008975 1.5e-16 89.0 54 74.1
Hma1.2p1_0644F.1_g194800 Hydrangea macrophylla HOM05D007141 ORTHO05D008975 1.5e-16 89.0 53 69.8
Hma1.2p1_1832F.1_g304585 Hydrangea macrophylla HOM05D007141 ORTHO05D008975 1.5e-16 89.0 53 69.8
TPR.G3578 Trifolium pratense HOM05D007141 ORTHO05D008975 1.5e-16 89.0 55 74.5
vmacro17441 Vaccinium macrocarpon HOM05D007141 ORTHO05D008975 1.5e-16 89.0 66 62.1
vmacro22570 Vaccinium macrocarpon HOM05D007141 ORTHO05D008975 1.5e-16 89.0 66 62.1
ClCG08G009990 Citrullus lanatus HOM05D000426 ORTHO05D000328 3.4e-16 87.8 47 78.7
MELO3C011470.2 Cucumis melo HOM05D007141 ORTHO05D008975 3.4e-16 87.8 46 80.4
CsaV3_6G032120 Cucumis sativus L. HOM05D007141 ORTHO05D008975 3.4e-16 87.8 46 80.4
Migut.A00104 Erythranthe guttata HOM05D007141 ORTHO05D008975 3.4e-16 87.8 65 61.5
FvH4_2g31430 Fragaria vesca HOM05D007141 ORTHO05D008975 4.4e-16 87.4 47 78.7
HanXRQChr10g0309781 Helianthus annuus HOM05D007141 ORTHO05D008975 4.4e-16 87.4 47 74.5
Nitab4.5_0002797g0020 Nicotiana tabacum HOM05D007141 ORTHO05D008975 5.7e-16 87.0 65 61.5
CiPaw.15G035700 Carya illinoinensis HOM05D007141 ORTHO05D008975 7.5e-16 86.7 76 55.3
CAN.G1181.10 Capsicum annuum HOM05D007141 ORTHO05D008975 9.8e-16 86.3 65 60.0
BcaC09g52107 Brassica carinata HOM05D007141 ORTHO05D008975 1.3e-15 85.9 47 80.9
C01p05580 Brassica napus HOM05D007141 ORTHO05D008975 1.3e-15 85.9 47 80.9
Actinidia25707 Actinidia chinensis HOM05D007141 ORTHO05D008975 1.7e-15 85.5 68 61.8
A01p05100 Brassica napus HOM05D007141 ORTHO05D008975 2.8e-15 84.7 47 78.7
BraA01t00493Z Brassica rapa HOM05D007141 ORTHO05D008975 2.8e-15 84.7 47 78.7
DCAR_003142 Daucus carota HOM05D007141 ORTHO05D008975 2.8e-15 84.7 53 67.9
ECA234G1667 Erigeron canadensis HOM05D007141 ORTHO05D008975 2.8e-15 84.7 53 66.0
Medtr3g104730 Medicago truncatula HOM05D007141 ORTHO05D008975 2.8e-15 84.7 55 69.1
Psat5g035560 Pisum sativum HOM05D007141 ORTHO05D008975 2.8e-15 84.7 55 67.3
CDE07G1700 Ceratophyllum demersum HOM05D007141 ORTHO05D008975 3.7e-15 84.3 55 65.5
Sed0026589 Sechium edule HOM05D007141 ORTHO05D008975 3.7e-15 84.3 47 74.5
Aa31LG1G7350 Aethionema arabicum HOM05D007141 ORTHO05D008975 6.3e-15 83.6 47 74.5
BcaC09g52111 Brassica carinata HOM05D007141 ORTHO05D008975 6.3e-15 83.6 47 78.7
Lsat_1_v5_gn_5_78660 Lactuca sativa HOM05D007141 ORTHO05D008975 6.3e-15 83.6 54 68.5
unitig_88.g27673 Utricularia gibba HOM05D007141 ORTHO05D008975 8.3e-15 83.2 53 64.2
Lalb_Chr08g0244921 Lupinus albus HOM05D007141 ORTHO05D008975 1.1e-14 82.8 56 66.1
Solyc08g062620.3 Solanum lycopersicum HOM05D007141 ORTHO05D008975 1.1e-14 82.8 65 56.9
Sopen08g018140 Solanum pennellii HOM05D007141 ORTHO05D008975 1.1e-14 82.8 65 56.9
PGSC0003DMG400008211 Solanum tuberosum HOM05D007141 ORTHO05D008975 1.1e-14 82.8 65 56.9
BolC1t00538H Brassica oleracea HOM05D007141 ORTHO05D008975 1.4e-14 82.4 47 76.6
AUR62009107 Chenopodium quinoa HOM05D007141 ORTHO05D008975 1.4e-14 82.4 47 72.3
Lj1g0005823 Lotus japonicus HOM05D007141 ORTHO05D008975 1.8e-14 82.0 47 76.6
Ah.10g034080 Amaranthus hybridus HOM05D007141 ORTHO05D008975 2.4e-14 81.6 46 69.6
SEGI_38617 Sequoiadendron giganteum HOM05D007141 ORTHO05D008975 9.2e-14 79.7 48 64.6
EL10Ac2g03813 Beta vulgaris HOM05D007141 ORTHO05D008975 1.6e-13 79.0 47 68.1
unitig_0.g2555 Utricularia gibba HOM05D007141 ORTHO05D008975 2.0e-13 78.6 53 58.5
CDE06G2239 Ceratophyllum demersum HOM05D007141 ORTHO05D008975 5.9e-13 77.0 55 61.8
Os09g0361700 Oryza sativa ssp. japonica HOM05D007141 ORTHO05D008975 7.8e-13 76.6 41 70.7
Zm00001eb310860 Zea mays HOM05D007141 ORTHO05D008975 1.7e-12 75.5 60 53.3
Mapoly0108s0048 Marchantia polymorpha HOM05D007141 ORTHO05D008975 3.9e-12 74.3 45 62.2
SEGI_00789 Sequoiadendron giganteum HOM05D007141 ORTHO05D008975 8.6e-12 73.2 44 68.2
Atru.BG.261.p Acer truncatum HOM05D007141 ORTHO05D008975 1.1e-11 72.8 38 92.1
HPP92_022917 Vanilla planifolia HOM05D007141 ORTHO05D008975 4.3e-11 70.9 46 65.2
HPP92_022928 Vanilla planifolia HOM05D007141 ORTHO05D008975 4.3e-11 70.9 46 65.2
MBI11_g07534_MAGBIO Magnolia biondii HOM05D007141 ORTHO05D008975 7.3e-11 70.1 78 46.2
Atru.BG.143.p Acer truncatum HOM05D007141 ORTHO05D008975 4.7e-10 67.4 34 88.2
THA.LOC104819900 Tarenaya hassleriana HOM05D007141 ORTHO05D008975 6.1e-10 67.0 69 50.7
Atru.BG.284.p Acer truncatum HOM05D007141 ORTHO05D008975 1.0e-09 66.2 34 88.2
AagrBONN_evm.TU.Sc2ySwM_117.1198 Anthoceros agrestis HOM05D007141 ORTHO05D008975 5.2e-09 63.9 47 51.1
AUR62020564 Chenopodium quinoa HOM05D007141 ORTHO05D008975 2.4e-06 55.1 29 72.4
SMO361G0717 Selaginella moellendorffii HOM05D007141 ORTHO05D008975 2.4e-06 55.1 51 47.1
BcaC03g16392 Brassica carinata HOM05D021655 ORTHO05D027207 9.2e-06 53.1 40 57.5
C02p42250 Brassica napus HOM05D021655 ORTHO05D027207 9.2e-06 53.1 40 57.5


User provided reference genes

Program Settings