Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.5e-229 798.5 419 100.0
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.5e-229 798.5 419 100.0
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.5e-229 798.5 419 100.0
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 7.4e-202 707.2 351 98.9
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 7.1e-136 488.0 352 70.7
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 1.6e-135 486.9 358 72.6
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 9.3e-128 461.1 356 66.0
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.6e-127 460.3 355 67.6
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 2.1e-127 459.9 354 66.4
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 3.5e-127 459.1 359 66.6
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 4.6e-127 458.8 354 66.7
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 7.9e-127 458.0 352 69.3
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 1.8e-126 456.8 352 68.8
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 3.9e-126 455.7 352 68.8
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 5.1e-126 455.3 360 66.4
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 5.1e-126 455.3 353 66.6
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 1.1e-125 454.1 321 72.3
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 7.4e-125 451.4 359 66.3
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 7.4e-125 451.4 358 65.6
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 9.6e-125 451.1 358 67.6
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 9.6e-125 451.1 364 64.8
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 3.7e-124 449.1 254 81.9
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 4.8e-124 448.7 356 66.0
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 4.8e-124 448.7 275 77.1
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 6.2e-124 448.4 346 66.8
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 8.1e-124 448.0 321 71.7
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 1.1e-123 447.6 330 70.3
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 1.8e-123 446.8 314 70.4
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 2.4e-123 446.4 333 68.8
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 5.3e-123 445.3 328 68.3
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 5.3e-123 445.3 341 66.6
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 5.3e-123 445.3 354 66.1
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 6.9e-123 444.9 353 65.2
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 6.9e-123 444.9 254 81.1
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 6.9e-123 444.9 346 66.5
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 9.0e-123 444.5 362 66.0
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 1.2e-122 444.1 252 82.1
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 1.5e-122 443.7 310 72.6
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 2.0e-122 443.4 348 67.2
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 2.0e-122 443.4 353 65.7
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 2.0e-122 443.4 240 87.9
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 2.6e-122 443.0 352 65.6
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 2.6e-122 443.0 338 67.8
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 3.4e-122 442.6 280 77.1
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 4.5e-122 442.2 268 78.0
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 7.6e-122 441.4 274 79.2
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 1.7e-121 440.3 370 62.4
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 1.7e-121 440.3 240 87.5
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 3.8e-121 439.1 273 76.6
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 4.9e-121 438.7 356 66.6
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 4.9e-121 438.7 328 67.1
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 6.4e-121 438.3 291 72.5
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 1.1e-120 437.6 248 79.8
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 1.4e-120 437.2 364 63.7
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 2.4e-120 436.4 254 81.5
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 4.2e-120 435.6 347 65.4
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 9.3e-120 434.5 242 83.9
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 3.5e-119 432.6 258 77.9
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 3.5e-119 432.6 293 73.4
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 1.3e-118 430.6 272 77.9
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 3.9e-118 429.1 252 81.3
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 3.9e-118 429.1 252 81.3
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 5.1e-118 428.7 375 62.7
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 2.5e-117 426.4 359 63.8
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 4.3e-117 425.6 360 63.3
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 1.6e-116 423.7 249 80.7
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 1.8e-115 420.2 351 63.8
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 6.9e-115 418.3 367 61.9
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 1.2e-114 417.5 243 81.5
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 1.2e-114 417.5 243 81.5
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 4.5e-114 415.6 239 79.5
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 5.8e-114 415.2 362 62.2
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 2.9e-113 412.9 352 62.8
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 1.4e-112 410.6 266 75.2
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 1.9e-112 410.2 255 78.0
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 4.2e-112 409.1 348 62.6
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 4.2e-112 409.1 329 63.2
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 5.5e-112 408.7 354 62.1
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 1.6e-111 407.1 259 76.4
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 2.1e-111 406.8 270 73.3
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 4.6e-111 405.6 357 61.1
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 1.3e-110 404.1 268 71.6
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 1.8e-110 403.7 270 74.1
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 5.1e-110 402.1 253 73.5
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 3.3e-109 399.4 330 62.7
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 2.8e-108 396.4 369 59.9
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 9.0e-107 391.3 357 57.1
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 9.0e-107 391.3 293 65.9
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 2.0e-106 390.2 245 75.5
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 2.6e-106 389.8 315 65.4
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 1.0e-105 387.9 243 73.3
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 4.2e-104 382.5 349 56.4
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 1.2e-103 380.9 356 59.3
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 7.9e-103 378.3 251 69.3
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 1.0e-102 377.9 287 67.2
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 3.0e-102 376.3 243 74.1
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 1.5e-101 374.0 240 74.6
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 1.5e-101 374.0 264 68.6
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 3.7e-100 369.4 306 64.4
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 6.3e-100 368.6 205 85.4
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 8.2e-100 368.2 268 67.9
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 9.1e-99 364.8 259 69.1
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 1.9e-96 357.1 202 83.7
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 1.2e-95 354.4 262 64.5
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 2.1e-95 353.6 239 66.9
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 1.4e-94 350.9 347 55.3
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.4e-91 340.9 269 63.2
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 5.9e-90 335.5 258 63.2
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 5.0e-89 332.4 207 78.7
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 5.0e-89 332.4 322 58.4
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 1.9e-88 330.5 190 82.1
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 4.2e-88 329.3 190 82.1
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 5.5e-88 328.9 354 54.5
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 3.9e-86 322.8 248 60.9
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 1.1e-85 321.2 189 79.9
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 5.7e-85 318.9 248 59.7
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.7e-84 317.4 248 60.1
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 1.1e-83 314.7 335 51.3
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 1.6e-82 310.8 329 52.0
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 8.5e-81 305.1 248 58.9
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 2.5e-80 303.5 257 58.4
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 2.5e-80 303.5 283 58.3
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 3.6e-79 299.7 234 64.1
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.5e-77 294.3 195 77.4
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 1.3e-76 291.2 205 72.2
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 1.8e-75 287.3 241 59.3
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 1.6e-74 284.3 327 49.8
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 1.7e-73 280.8 161 85.1
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 1.7e-73 280.8 160 84.4
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 3.8e-73 279.6 348 48.9
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 3.8e-73 279.6 334 50.6
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 3.2e-72 276.6 165 79.4
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 2.3e-70 270.4 205 66.8
PRCOL_00006084 Prasinoderma coloniale HOM05D003744 ORTHO05D004327 2.2e-68 263.8 194 64.4
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 6.3e-68 262.3 185 68.6
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 3.5e-66 256.5 141 85.1
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 2.0e-58 230.7 255 55.7
Os08g0389300 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 1.0e-57 228.4 148 70.9
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 2.3e-57 227.3 235 54.0
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 2.9e-57 226.9 243 55.1
SEGI_19125 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 4.7e-55 219.5 148 67.6
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 8.0e-55 218.8 159 68.6
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 1.4e-54 218.0 160 65.6
Haze_26705 Corylus avellana HOM05D003744 ORTHO05D004327 5.2e-54 216.1 233 47.6
arahy.Tifrunner.gnm1.ann1.1L5CCL Arachis hypogaea HOM05D003744 ORTHO05D004327 2.4e-51 207.2 117 83.8
CBR_g5669 Chara braunii HOM05D003744 ORTHO05D004327 2.4e-51 207.2 160 65.0
SEGI_31034 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 7.0e-51 205.7 122 77.0
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 7.8e-50 202.2 187 59.9
TPR.G35100 Trifolium pratense HOM05D003744 ORTHO05D004327 1.1e-48 198.4 107 85.0
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 1.6e-47 194.5 205 50.2
Cfa021958 Carpinus fangiana HOM05D003744 ORTHO05D004327 4.7e-47 193.0 246 45.5
Eucgr.H03234 Eucalyptus grandis HOM05D003744 ORTHO05D004327 6.2e-47 192.6 103 85.4
SEGI_29356 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 1.2e-45 188.3 278 40.3
Gohir.A12G137450 Gossypium hirsutum HOM05D003744 ORTHO05D004327 5.4e-43 179.5 212 45.3
Cc00_g30150 Coffea canephora HOM05D003744 ORTHO05D004327 1.3e-41 174.9 119 70.6
CBR_g4211 Chara braunii HOM05D003744 ORTHO05D004327 2.1e-39 167.5 146 56.8
FAN12G4043 Fragaria x ananassa HOM05D003744 ORTHO05D004327 1.2e-37 161.8 189 50.8
QL08p053645 Quercus lobata HOM05D003744 ORTHO05D004327 3.2e-35 153.7 189 48.7
Lj1g0011441 Lotus japonicus HOM05D003744 ORTHO05D004327 1.3e-33 148.3 82 79.3
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 3.6e-31 140.2 161 53.4
Lalb_Chr12g0204281 Lupinus albus HOM05D003744 ORTHO05D004327 1.2e-26 125.2 83 73.5
HPP92_014779 Vanilla planifolia HOM05D003744 ORTHO05D004327 1.6e-26 124.8 124 53.2
Cc00_g32230 Coffea canephora HOM05D003744 ORTHO05D004327 1.7e-25 121.3 117 47.0
SEGI_11824 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 2.8e-23 114.0 70 75.7
Cc04_g13890 Coffea canephora HOM05D003744 ORTHO05D004327 6.2e-23 112.8 102 53.9
Cc04_g15800 Coffea canephora HOM05D003744 ORTHO05D004327 2.6e-21 107.5 119 47.9
RcHm_v2.0_Chr5g0044931 Rosa chinensis HOM05D003744 ORTHO05D004327 8.4e-20 102.4 117 50.4
Lalb_Chr12g0204291 Lupinus albus HOM05D003744 ORTHO05D004327 1.9e-16 91.3 67 61.2
MD16G1001300 Malus domestica HOM05D003744 ORTHO05D004327 5.6e-16 89.7 77 59.7
DCAR_026463 Daucus carota HOM05D003744 ORTHO05D004327 2.8e-15 87.4 146 37.7
TAR374G0013 Trochodendron aralioides HOM05D003744 ORTHO05D004327 6.2e-15 86.3 47 80.9
Glyma.09G272651 Glycine max HOM05D003744 ORTHO05D004327 1.8e-14 84.7 176 35.2
BolC3t20296H Brassica oleracea HOM05D003744 ORTHO05D004327 1.5e-13 81.6 61 60.7
Cc04_g13900 Coffea canephora HOM05D003744 ORTHO05D004327 2.0e-13 81.3 56 71.4
vmacro10898 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 2.6e-13 80.9 57 68.4
Migut.H00604 Erythranthe guttata HOM05D003744 ORTHO05D004327 2.9e-12 77.4 73 53.4
Aqoxy5G00880 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.1e-11 75.5 61 57.4
Cpa.g.sc5.29 Carica papaya HOM05D003744 ORTHO05D004327 1.9e-11 74.7 96 43.8
Migut.N01582 Erythranthe guttata HOM05D003744 ORTHO05D004327 5.4e-11 73.2 72 54.2
RcHm_v2.0_Chr5g0044971 Rosa chinensis HOM05D003744 ORTHO05D004327 1.2e-10 72.0 43 81.4
Nn2g14220 Nelumbo nucifera HOM05D003744 ORTHO05D004327 6.9e-06 56.2 41 68.3


User provided reference genes

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