Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy81s001 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 4.8e-114 416.0 206 100.0
Nn2g11855 Nelumbo nucifera HOM05D005141 ORTHO05D006250 1.9e-30 138.3 128 57.8
TAR626G1320 Trochodendron aralioides HOM05D005141 ORTHO05D006250 3.4e-27 127.5 132 54.5
TAR383G0458 Trochodendron aralioides HOM05D005141 ORTHO05D006250 5.8e-27 126.7 132 53.8
TAR636G0300 Trochodendron aralioides HOM05D005141 ORTHO05D006250 4.1e-25 120.6 132 53.8
Dinv11587 Davidia involucrata HOM05D005141 ORTHO05D006250 6.6e-23 113.2 133 51.9
Lj1g0018494 Lotus japonicus HOM05D005141 ORTHO05D006250 1.9e-22 111.7 131 50.4
Glyma.04G071400 Glycine max HOM05D005141 ORTHO05D006250 3.3e-22 110.9 131 50.4
TPR.G34685 Trifolium pratense HOM05D005141 ORTHO05D006250 5.6e-22 110.2 131 51.1
Lj7A714G44 Lonicera japonica HOM05D005141 ORTHO05D006250 1.2e-21 109.0 133 50.4
Phvul.009G097300 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 1.2e-21 109.0 131 48.9
Potri.018G033700 Populus trichocarpa HOM05D005141 ORTHO05D006250 2.1e-21 108.2 129 47.3
CiPaw.08G014900 Carya illinoinensis HOM05D005141 ORTHO05D006250 6.2e-21 106.7 132 47.0
Ciclev10008356m.g Citrus clementina HOM05D005141 ORTHO05D006250 6.2e-21 106.7 130 50.8
MD15G1116100 Malus domestica HOM05D005141 ORTHO05D006250 8.1e-21 106.3 134 50.0
Dinv30204 Davidia involucrata HOM05D005141 ORTHO05D006250 1.1e-20 105.9 133 51.9
FAN20G1096 Fragaria x ananassa HOM05D005141 ORTHO05D006250 1.1e-20 105.9 133 50.4
Medtr3g107950 Medicago truncatula HOM05D005141 ORTHO05D006250 1.4e-20 105.5 132 50.8
Glyma.06G072700 Glycine max HOM05D005141 ORTHO05D006250 2.4e-20 104.8 130 45.4
GSVIVG01035797001 Vitis vinifera HOM05D005141 ORTHO05D006250 2.4e-20 104.8 130 50.8
Prupe.1G467500 Prunus persica HOM05D005141 ORTHO05D006250 3.1e-20 104.4 128 50.8
Lalb_Chr23g0268881 Lupinus albus HOM05D005141 ORTHO05D006250 6.8e-20 103.2 128 48.4
FAN27G2430 Fragaria x ananassa HOM05D005141 ORTHO05D006250 8.9e-20 102.8 133 49.6
Ca_15703_v3 Cicer arietinum L. HOM05D005141 ORTHO05D006250 1.2e-19 102.4 131 49.6
Hma1.2p1_0175F.1_g077130 Hydrangea macrophylla HOM05D005141 ORTHO05D006250 1.2e-19 102.4 133 48.9
COL.COLO4_24046 Corchorus olitorius HOM05D005141 ORTHO05D006250 1.5e-19 102.1 133 48.1
MBI04_g39529_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 2.0e-19 101.7 126 48.4
QL12p031441 Quercus lobata HOM05D005141 ORTHO05D006250 2.0e-19 101.7 131 48.9
RcHm_v2.0_Chr6g0312851 Rosa chinensis HOM05D005141 ORTHO05D006250 2.0e-19 101.7 133 49.6
Cfa021484 Carpinus fangiana HOM05D005141 ORTHO05D006250 2.6e-19 101.3 133 46.6
Sabra18G0034600 Salix brachista HOM05D005141 ORTHO05D006250 2.6e-19 101.3 129 44.2
VMungo1309G3073 Vigna mungo HOM05D005141 ORTHO05D006250 2.6e-19 101.3 131 47.3
MD08G1137500 Malus domestica HOM05D005141 ORTHO05D006250 5.8e-19 100.1 133 48.1
DCAR_022871 Daucus carota HOM05D005141 ORTHO05D006250 9.9e-19 99.4 128 46.9
FAN15G0409 Fragaria x ananassa HOM05D005141 ORTHO05D006250 9.9e-19 99.4 133 48.1
FAN24G3348 Fragaria x ananassa HOM05D005141 ORTHO05D006250 9.9e-19 99.4 133 48.1
PSO063G0687 Papaver somniferum HOM05D005141 ORTHO05D006250 2.2e-18 98.2 133 45.1
PSO782G1260 Papaver somniferum HOM05D005141 ORTHO05D006250 2.2e-18 98.2 133 45.1
Eucgr.C01809 Eucalyptus grandis HOM05D005141 ORTHO05D006250 4.9e-18 97.1 116 51.7
Thecc.09G145300 Theobroma cacao HOM05D005141 ORTHO05D006250 4.9e-18 97.1 138 45.7
Duzib168G0094 Durio zibethinus HOM05D005141 ORTHO05D006250 8.4e-18 96.3 133 46.6
Duzib187G0541 Durio zibethinus HOM05D005141 ORTHO05D006250 1.1e-17 95.9 133 47.4
CiPaw.07G218200 Carya illinoinensis HOM05D005141 ORTHO05D006250 4.2e-17 94.0 132 46.2
Sabra06G0193700 Salix brachista HOM05D005141 ORTHO05D006250 4.2e-17 94.0 130 46.2
Manes.16G067800 Manihot esculenta HOM05D005141 ORTHO05D006250 7.1e-17 93.2 133 45.1
Atru.chr7.2334 Acer truncatum HOM05D005141 ORTHO05D006250 1.2e-16 92.4 132 45.5
Haze_21614 Corylus avellana HOM05D005141 ORTHO05D006250 1.6e-16 92.0 97 52.6
Lalb_Chr08g0243831 Lupinus albus HOM05D005141 ORTHO05D006250 1.6e-16 92.0 128 45.3
Actinidia13280 Actinidia chinensis HOM05D005141 ORTHO05D006250 4.6e-16 90.5 140 45.0
Duzib150G1154 Durio zibethinus HOM05D005141 ORTHO05D006250 6.0e-16 90.1 136 45.6
ClCG08G012940 Citrullus lanatus HOM05D005141 ORTHO05D006250 1.7e-15 88.6 135 46.7
Gohir.A05G010100 Gossypium hirsutum HOM05D005141 ORTHO05D006250 1.7e-15 88.6 132 43.9
Gorai.009G011200 Gossypium raimondii HOM05D005141 ORTHO05D006250 1.7e-15 88.6 132 43.9
arahy.Tifrunner.gnm1.ann1.WUI646 Arachis hypogaea HOM05D005141 ORTHO05D006250 2.3e-15 88.2 93 51.6
CANSAT25G3062 Cannabis sativa HOM05D005141 ORTHO05D006250 3.9e-15 87.4 96 51.0
PGR031G2456 Punica granatum HOM05D005141 ORTHO05D006250 3.9e-15 87.4 132 43.9
TWI32G0021 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 3.9e-15 87.4 131 47.3
Nitab4.5_0011669g0010 Nicotiana tabacum HOM05D005141 ORTHO05D006250 8.7e-15 86.3 134 43.3
Solyc06g065650.3 Solanum lycopersicum HOM05D005141 ORTHO05D006250 8.7e-15 86.3 134 43.3
CSS0000568 Camellia sinensis var. sinensis HOM05D005141 ORTHO05D006250 3.3e-14 84.3 135 45.2
SalBow4G0713 Salvia bowleyana HOM05D005141 ORTHO05D006250 3.3e-14 84.3 61 68.9
TWI34G0135 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 3.3e-14 84.3 43 90.7
Manes.03G065500 Manihot esculenta HOM05D005141 ORTHO05D006250 4.3e-14 84.0 55 78.2
CAN.G199.28 Capsicum annuum HOM05D005141 ORTHO05D006250 5.6e-14 83.6 134 46.3
Nitab4.5_0005873g0030 Nicotiana tabacum HOM05D005141 ORTHO05D006250 5.6e-14 83.6 134 42.5
Sopen06g024010 Solanum pennellii HOM05D005141 ORTHO05D006250 5.6e-14 83.6 134 41.8
Actinidia13429 Actinidia chinensis HOM05D005141 ORTHO05D006250 7.3e-14 83.2 134 42.5
CsaV3_2G031660 Cucumis sativus L. HOM05D005141 ORTHO05D006250 7.3e-14 83.2 130 43.1
HanXRQChr02g0050641 Helianthus annuus HOM05D005141 ORTHO05D006250 7.3e-14 83.2 59 71.2
MSTRG.25868 Avicennia marina HOM05D005141 ORTHO05D006250 1.3e-13 82.4 50 80.0
ECA233G0036 Erigeron canadensis HOM05D005141 ORTHO05D006250 1.6e-13 82.0 116 44.0
Migut.A00282 Erythranthe guttata HOM05D005141 ORTHO05D006250 1.6e-13 82.0 88 52.3
Sed0000645 Sechium edule HOM05D005141 ORTHO05D006250 2.8e-13 81.3 135 42.2
PGSC0003DMG400026089 Solanum tuberosum HOM05D005141 ORTHO05D006250 3.6e-13 80.9 94 50.0
ClCG05G017130 Citrullus lanatus HOM05D005141 ORTHO05D006250 4.8e-13 80.5 130 44.6
Gohir.D05G010800 Gossypium hirsutum HOM05D005141 ORTHO05D006250 6.2e-13 80.1 138 39.9
Cc08_g08010 Coffea canephora HOM05D005141 ORTHO05D006250 8.1e-13 79.7 84 53.6
MELO3C003675.2 Cucumis melo HOM05D005141 ORTHO05D006250 1.1e-12 79.3 135 42.2
Lsat_1_v5_gn_6_22941 Lactuca sativa HOM05D005141 ORTHO05D006250 1.4e-12 79.0 41 87.8
TAR365G0952 Trochodendron aralioides HOM05D002444 ORTHO05D009235 1.4e-12 79.0 40 87.5
AL7G19190 Arabidopsis lyrata HOM05D005141 ORTHO05D006250 1.8e-12 78.6 85 52.9
THA.LOC104803820 Tarenaya hassleriana HOM05D005141 ORTHO05D006250 2.4e-12 78.2 40 90.0
vmacro11124 Vaccinium macrocarpon HOM05D005141 ORTHO05D006250 2.4e-12 78.2 153 40.5
Gorai.013G105500 Gossypium raimondii HOM05D002444 ORTHO05D009235 3.1e-12 77.8 43 76.7
SHI18604 Sapria himalayana HOM05D005141 ORTHO05D006250 3.1e-12 77.8 40 85.0
AT4G32570 Arabidopsis thaliana HOM05D005141 ORTHO05D006250 4.0e-12 77.4 111 45.9
Gohir.D02G117100 Gossypium hirsutum HOM05D002444 ORTHO05D009235 6.9e-12 76.6 42 78.6
Oeu032487.3 Olea europaea HOM05D005141 ORTHO05D006250 6.9e-12 76.6 85 49.4
SGA_v2.0_scaffold27G11478 Striga asiatica HOM05D005141 ORTHO05D006250 1.5e-11 75.5 61 67.2
Lsat_1_v5_gn_1_43100 Lactuca sativa HOM05D005141 ORTHO05D006250 2.0e-11 75.1 41 82.9
Phvul.001G055100 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 2.0e-11 75.1 49 73.5
BcaC09g52048 Brassica carinata HOM05D005141 ORTHO05D006250 2.6e-11 74.7 112 47.3
A08p18120 Brassica napus HOM05D005141 ORTHO05D006250 2.6e-11 74.7 68 55.9
CsaV3_3G046630 Cucumis sativus L. HOM05D005141 ORTHO05D006250 2.6e-11 74.7 52 73.1
HanXRQChr13g0402161 Helianthus annuus HOM05D005141 ORTHO05D006250 2.6e-11 74.7 40 85.0
BcaC01g01013 Brassica carinata HOM05D005141 ORTHO05D006250 3.4e-11 74.3 68 57.4
BraA01t00550Z Brassica rapa HOM05D005141 ORTHO05D006250 3.4e-11 74.3 115 44.3
BcaB03g12752 Brassica carinata HOM05D005141 ORTHO05D006250 4.4e-11 73.9 68 55.9
BraA08t33764Z Brassica rapa HOM05D005141 ORTHO05D006250 4.4e-11 73.9 111 43.2
Thhalv10025562m.g Eutrema salsugineum HOM05D005141 ORTHO05D006250 4.4e-11 73.9 112 44.6
HPP92_009098 Vanilla planifolia HOM05D005141 ORTHO05D006250 4.4e-11 73.9 131 38.9
A01p37370 Brassica napus HOM05D002444 ORTHO05D009235 7.6e-11 73.2 45 71.1
C03p87260 Brassica napus HOM05D005141 ORTHO05D006250 7.6e-11 73.2 68 57.4
BolC3t21027H Brassica oleracea HOM05D005141 ORTHO05D006250 7.6e-11 73.2 68 57.4
BcaC09g48647 Brassica carinata HOM05D002444 ORTHO05D009235 9.9e-11 72.8 45 71.1
A01p05810 Brassica napus HOM05D005141 ORTHO05D006250 9.9e-11 72.8 71 57.7
C01p47300 Brassica napus HOM05D002444 ORTHO05D009235 9.9e-11 72.8 45 71.1
BolC1t04700H Brassica oleracea HOM05D002444 ORTHO05D009235 9.9e-11 72.8 45 71.1
BraA01t03795Z Brassica rapa HOM05D002444 ORTHO05D009235 9.9e-11 72.8 45 71.1
BolC1t00634H Brassica oleracea HOM05D005141 ORTHO05D006250 1.3e-10 72.4 105 45.7
CANSAT01G1305 Cannabis sativa HOM05D002444 ORTHO05D009235 1.3e-10 72.4 41 75.6
Eucgr.H04031 Eucalyptus grandis HOM05D002444 ORTHO05D009235 1.3e-10 72.4 39 76.9
AagrBONN_evm.TU.Sc2ySwM_117.408 Anthoceros agrestis HOM05D005141 ORTHO05D006250 1.7e-10 72.0 61 67.2
Carub.0007s0798 Capsella rubella HOM05D005141 ORTHO05D006250 1.7e-10 72.0 68 57.4
C01p06380 Brassica napus HOM05D005141 ORTHO05D006250 2.2e-10 71.6 113 44.2
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 2.2e-10 71.6 38 81.6
Sp7g30350 Schrenkiella parvula HOM05D005141 ORTHO05D006250 2.2e-10 71.6 68 55.9
Sed0008448 Sechium edule HOM05D005141 ORTHO05D006250 2.2e-10 71.6 52 73.1
Pp3c22_12420 Physcomitrium patens HOM05D005141 ORTHO05D006250 4.9e-10 70.5 61 59.0
arahy.Tifrunner.gnm1.ann1.29TRSQ Arachis hypogaea HOM05D005141 ORTHO05D006250 1.1e-09 69.3 131 36.6
Phvul.003G282300 Phaseolus vulgaris HOM05D002444 ORTHO05D009235 1.1e-09 69.3 43 67.4
Aa31LG4G11720 Aethionema arabicum HOM05D005141 ORTHO05D006250 1.4e-09 68.9 49 67.3
ATR0083G007 Amborella trichopoda HOM05D005141 ORTHO05D006250 1.4e-09 68.9 91 48.4
MELO3C011217.2 Cucumis melo HOM05D005141 ORTHO05D006250 1.4e-09 68.9 156 35.9
SEGI_18535 Sequoiadendron giganteum HOM05D005141 ORTHO05D006250 2.4e-09 68.2 51 68.6
Mapoly0079s0053 Marchantia polymorpha HOM05D005141 ORTHO05D006250 4.2e-09 67.4 153 39.2
SMO143G0273 Selaginella moellendorffii HOM05D005141 ORTHO05D006250 4.2e-09 67.4 73 54.8
AUR62024850 Chenopodium quinoa HOM05D005141 ORTHO05D006250 5.4e-09 67.0 99 45.5
Pp3c19_8700 Physcomitrium patens HOM05D005141 ORTHO05D006250 5.4e-09 67.0 61 57.4
ATR0697G276 Amborella trichopoda HOM05D002444 ORTHO05D009235 9.3e-09 66.2 39 74.4
EL10Ac2g02550 Beta vulgaris HOM05D005141 ORTHO05D006250 1.2e-08 65.9 132 37.1
unitig_37.g12225 Utricularia gibba HOM05D005141 ORTHO05D006250 1.6e-08 65.5 47 66.0
unitig_46.g18533 Utricularia gibba HOM05D005141 ORTHO05D006250 1.6e-08 65.5 64 50.0
Peaxi162Scf00545g00034 Petunia axillaris HOM05D005141 ORTHO05D006250 2.3e-07 61.6 163 32.5
Rhsim02G0188600 Rhododendron simsii HOM05D005141 ORTHO05D006250 5.1e-07 60.5 112 40.2
unitig_748.g7794 Utricularia gibba HOM05D002444 ORTHO05D009235 1.1e-06 59.3 37 70.3
Cpa.g.sc91.24 Carica papaya HOM05D005141 ORTHO05D006250 4.3e-06 57.4 110 41.8
arahy.Tifrunner.gnm1.ann1.48GXQL Arachis hypogaea HOM05D002444 ORTHO05D009235 5.6e-06 57.0 28 82.1
Os12g0557800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D009235 9.6e-06 56.2 32 68.8


User provided reference genes

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