Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 0.0e+00 1603.2 780 100.0
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1084.7 772 69.9
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 8.4e-308 1060.1 781 68.4
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 5.5e-307 1057.4 769 67.6
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 7.6e-301 1036.9 767 67.5
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 3.8e-300 1034.6 775 66.8
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 1.3e-295 1019.6 765 67.3
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 6.9e-294 1013.8 765 65.9
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 1.5e-293 1012.7 765 66.5
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 3.4e-293 1011.5 765 65.8
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 2.5e-291 1005.4 766 65.5
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 1.2e-290 1003.0 766 64.8
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 4.6e-290 1001.1 765 64.4
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 8.7e-289 996.9 771 65.1
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 2.5e-288 995.3 766 64.9
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 9.7e-288 993.4 771 65.0
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 2.8e-287 991.9 765 65.0
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 1.1e-286 989.9 767 65.6
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 1.1e-286 989.9 764 65.8
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 1.8e-286 989.2 789 63.6
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 2.4e-286 988.8 770 64.9
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 6.9e-286 987.3 764 65.3
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 1.5e-285 986.1 764 63.0
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 2.0e-285 985.7 765 65.2
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 2.2e-284 982.2 768 65.9
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 6.5e-284 980.7 766 63.3
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 2.5e-283 978.8 765 65.5
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 3.2e-283 978.4 774 62.3
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 4.2e-283 978.0 767 63.9
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 2.7e-282 975.3 766 65.4
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 3.6e-282 974.9 777 61.9
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 3.6e-282 974.9 767 64.7
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 3.6e-282 974.9 767 64.4
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 3.6e-282 974.9 764 66.4
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 4.6e-282 974.5 766 63.8
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 1.4e-281 973.0 768 63.5
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 2.3e-281 972.2 768 63.5
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 2.3e-281 972.2 768 65.5
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 3.9e-281 971.5 796 62.1
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 5.1e-281 971.1 768 64.6
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 1.5e-280 969.5 771 63.9
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 2.6e-280 968.8 775 62.8
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 3.3e-280 968.4 763 65.0
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 3.3e-280 968.4 771 63.8
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 5.7e-280 967.6 768 64.3
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 4.8e-279 964.5 769 63.1
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 1.8e-278 962.6 765 63.0
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 2.0e-277 959.1 774 62.4
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 5.9e-277 957.6 767 62.7
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 2.9e-276 955.3 770 62.2
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 1.9e-275 952.6 771 62.0
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 7.9e-274 947.2 770 61.9
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 3.9e-273 944.9 774 61.4
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 6.7e-273 944.1 770 61.3
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 6.7e-273 944.1 770 61.3
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 6.7e-273 944.1 772 63.5
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 3.3e-272 941.8 766 61.9
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.3e-271 939.9 770 60.9
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 2.8e-271 938.7 770 61.0
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 1.1e-270 936.8 764 62.2
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.8e-270 936.0 770 63.2
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 3.5e-269 931.8 769 63.6
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 5.9e-269 931.0 768 62.9
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 1.0e-268 930.2 771 60.1
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 1.0e-268 930.2 781 61.2
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 1.3e-268 929.9 767 60.0
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 2.9e-268 928.7 770 62.1
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 3.8e-268 928.3 769 60.6
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 5.5e-267 924.5 769 62.4
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 1.2e-266 923.3 770 61.0
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.6e-266 922.9 769 60.3
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 8.0e-266 920.6 768 61.2
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 4.0e-265 918.3 778 60.9
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 8.8e-265 917.1 774 60.2
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 1.5e-264 916.4 816 57.8
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 3.3e-264 915.2 768 61.2
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 2.8e-263 912.1 768 60.9
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 6.3e-263 911.0 772 61.9
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 6.3e-263 911.0 777 59.2
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 8.2e-263 910.6 777 60.4
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 1.1e-262 910.2 781 58.8
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 1.4e-262 909.8 768 61.1
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 3.1e-262 908.7 770 61.4
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 4.1e-262 908.3 777 58.7
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 3.5e-261 905.2 804 58.5
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 1.3e-260 903.3 776 59.9
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.1e-259 900.2 805 58.4
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 7.2e-259 897.5 767 60.9
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 2.7e-258 895.6 738 62.3
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 3.6e-258 895.2 776 58.2
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 2.3e-257 892.5 765 59.6
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 6.8e-257 891.0 745 59.6
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 1.5e-256 889.8 771 58.2
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 2.6e-256 889.0 770 60.0
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 3.4e-256 888.6 767 59.6
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 1.7e-255 886.3 777 58.0
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 6.3e-255 884.4 777 58.7
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 8.3e-255 884.0 774 59.2
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 5.4e-254 881.3 777 57.9
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 1.2e-253 880.2 767 59.7
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 2.7e-253 879.0 769 57.2
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 5.0e-252 874.8 766 58.1
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 6.5e-252 874.4 774 57.2
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 1.1e-251 873.6 777 56.8
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 4.2e-251 871.7 769 59.0
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 1.6e-250 869.8 766 58.1
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 1.0e-249 867.1 769 58.0
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 2.3e-249 865.9 775 57.7
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 3.0e-249 865.5 767 58.3
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 4.0e-249 865.1 770 57.5
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 5.2e-249 864.8 772 57.9
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 6.8e-249 864.4 747 58.8
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 8.9e-249 864.0 772 58.2
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 1.2e-248 863.6 768 57.8
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 2.2e-247 859.4 768 57.9
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.2e-247 859.4 767 58.7
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 2.8e-247 859.0 765 57.6
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 2.0e-245 852.8 780 56.9
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 3.5e-245 852.0 773 57.6
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 1.5e-240 836.6 780 56.0
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 4.4e-240 835.1 721 59.4
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 4.4e-240 835.1 775 56.0
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 2.2e-239 832.8 779 56.6
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 1.0e-236 823.9 780 56.9
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 3.0e-236 822.4 784 54.8
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 2.1e-234 816.2 851 52.9
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 3.4e-232 808.9 768 57.7
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.4e-230 803.5 743 56.1
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 9.5e-227 790.8 745 55.7
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 6.2e-226 788.1 737 58.3
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 3.4e-224 782.3 768 53.3
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 1.7e-223 780.0 762 54.1
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 2.4e-217 759.6 737 56.0
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 5.2e-217 758.4 737 55.9
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 1.6e-210 736.9 709 56.7
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 7.6e-208 728.0 765 50.1
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 1.4e-201 707.2 679 55.7
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 2.1e-197 693.3 747 51.7
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 3.6e-173 612.8 760 45.3
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 4.8e-170 602.4 758 44.3
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 1.3e-167 594.3 785 42.9
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 1.6e-165 587.4 746 44.1
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 9.7e-163 578.2 764 44.1
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 2.4e-161 573.5 781 42.6
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 2.2e-151 540.4 444 62.4
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 1.7e-146 524.2 790 39.0
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 2.2e-143 513.8 409 63.3
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 2.7e-141 506.9 391 62.1
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 2.7e-141 506.9 391 62.1
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 2.5e-134 483.8 410 60.2
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 2.1e-133 480.7 557 46.3
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 6.8e-124 449.1 270 78.9
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 2.4e-113 414.1 448 51.3
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 6.2e-109 399.4 256 72.3
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 8.1e-109 399.1 432 49.8
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 2.5e-94 350.9 739 33.7
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.1e-70 272.3 276 52.2
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 6.2e-69 266.5 754 28.8
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 5.3e-52 210.3 280 42.9
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 1.5e-46 192.2 151 62.3
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 2.0e-43 181.8 179 50.3
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 3.0e-39 167.9 151 59.6
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.8e-37 161.4 73 87.7
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.3e-29 136.0 69 79.7
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.6e-19 102.4 162 36.4
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.9e-17 95.5 134 38.1
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 4.9e-13 80.9 103 41.7
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 1.3e-10 72.8 89 40.4
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 1.5e-09 69.3 46 69.6
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 2.5e-09 68.6 67 52.2
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 5.6e-09 67.4 39 74.4


User provided reference genes

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