Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G04116 Aquilegia oxysepala HOM05D003219 ORTHO05D005190 2.6e-115 418.7 206 100.0
Aqoxy7G01613 Aquilegia oxysepala HOM05D003219 ORTHO05D000067 2.4e-28 129.8 157 45.2
Medtr5g027050 Medicago truncatula HOM05D003219 ORTHO05D005190 5.4e-28 128.6 171 40.4
Ah.03g134710 Amaranthus hybridus HOM05D003219 ORTHO05D005190 3.8e-26 122.5 90 62.2
Aqoxy7G01388 Aquilegia oxysepala HOM05D003219 ORTHO05D005190 3.8e-26 122.5 181 42.5
Hund25208 Selenicereus undatus HOM05D003219 ORTHO05D005190 3.8e-26 122.5 90 63.3
unitig_578.g16698 Utricularia gibba HOM05D003219 ORTHO05D005190 3.8e-26 122.5 90 64.4
EL10Ac6g13262 Beta vulgaris HOM05D003219 ORTHO05D005190 5.0e-26 122.1 90 61.1
Ciclev10014187m.g Citrus clementina HOM05D003219 ORTHO05D005190 1.1e-25 120.9 90 62.2
SalBow6G2379 Salvia bowleyana HOM05D003219 ORTHO05D005190 1.1e-25 120.9 90 62.2
MSTRG.28076 Avicennia marina HOM05D003219 ORTHO05D005190 1.9e-25 120.2 90 62.2
AUR62018141 Chenopodium quinoa HOM05D003219 ORTHO05D005190 1.9e-25 120.2 90 61.1
AUR62034479 Chenopodium quinoa HOM05D003219 ORTHO05D005190 1.9e-25 120.2 90 61.1
Cc02_g12290 Coffea canephora HOM05D003219 ORTHO05D005190 2.5e-25 119.8 90 60.0
Gohir.A05G164800 Gossypium hirsutum HOM05D003219 ORTHO05D005190 2.5e-25 119.8 90 61.1
MBI19_g24733_MAGBIO Magnolia biondii HOM05D003219 ORTHO05D005190 3.3e-25 119.4 90 62.2
CDE07G0042 Ceratophyllum demersum HOM05D003219 ORTHO05D005190 4.3e-25 119.0 90 62.2
Migut.N01591 Erythranthe guttata HOM05D003219 ORTHO05D005190 4.3e-25 119.0 90 63.3
Gohir.D05G167800 Gossypium hirsutum HOM05D003219 ORTHO05D005190 4.3e-25 119.0 90 61.1
Gorai.009G172900 Gossypium raimondii HOM05D003219 ORTHO05D005190 4.3e-25 119.0 90 61.1
Sc17g0006530 Simmondsia chinensis HOM05D003219 ORTHO05D005190 4.3e-25 119.0 90 61.1
Thecc.06G197600 Theobroma cacao HOM05D003219 ORTHO05D005190 5.6e-25 118.6 90 61.1
Duzib235G0214 Durio zibethinus HOM05D003219 ORTHO05D005190 7.3e-25 118.2 90 61.1
Migut.N01473 Erythranthe guttata HOM05D003219 ORTHO05D005190 7.3e-25 118.2 90 62.2
HanXRQChr01g0016091 Helianthus annuus HOM05D003219 ORTHO05D005190 7.3e-25 118.2 90 61.1
Nitab4.5_0000634g0070 Nicotiana tabacum HOM05D003219 ORTHO05D005190 7.3e-25 118.2 90 60.0
Nitab4.5_0005198g0010 Nicotiana tabacum HOM05D003219 ORTHO05D005190 7.3e-25 118.2 90 60.0
Atru.chr10.1995 Acer truncatum HOM05D003219 ORTHO05D005190 9.5e-25 117.9 90 61.1
CANSAT78G1072 Cannabis sativa HOM05D003219 ORTHO05D005190 9.5e-25 117.9 90 60.0
COL.COLO4_31569 Corchorus olitorius HOM05D003219 ORTHO05D005190 9.5e-25 117.9 90 61.1
MBI11_g22684_MAGBIO Magnolia biondii HOM05D003219 ORTHO05D005190 9.5e-25 117.9 90 61.1
QL05p081849 Quercus lobata HOM05D003219 ORTHO05D005190 9.5e-25 117.9 90 61.1
ATR0753G017 Amborella trichopoda HOM05D003219 ORTHO05D005190 1.2e-24 117.5 90 60.0
CAN.G1131.23 Capsicum annuum HOM05D003219 ORTHO05D005190 1.6e-24 117.1 90 60.0
Peaxi162Scf00428g00711 Petunia axillaris HOM05D003219 ORTHO05D005190 1.6e-24 117.1 90 58.9
SGA_v2.0_scaffold24G10682 Striga asiatica HOM05D003219 ORTHO05D005190 1.6e-24 117.1 88 62.5
GSVIVG01006714001 Vitis vinifera HOM05D003219 ORTHO05D005190 1.6e-24 117.1 90 61.1
Actinidia01932 Actinidia chinensis HOM05D003219 ORTHO05D005190 2.1e-24 116.7 90 61.1
Aa31LG11G8590 Aethionema arabicum HOM05D003219 ORTHO05D005190 2.1e-24 116.7 90 61.1
CiPaw.09G158900 Carya illinoinensis HOM05D003219 ORTHO05D005190 2.1e-24 116.7 90 62.2
ClCG01G022630 Citrullus lanatus HOM05D003219 ORTHO05D005190 2.1e-24 116.7 90 60.0
MELO3C007313.2 Cucumis melo HOM05D003219 ORTHO05D005190 2.1e-24 116.7 90 60.0
CsaV3_6G049830 Cucumis sativus L. HOM05D003219 ORTHO05D005190 2.1e-24 116.7 90 60.0
ECA248G3185 Erigeron canadensis HOM05D003219 ORTHO05D005190 2.1e-24 116.7 90 60.0
Solyc01g086990.3 Solanum lycopersicum HOM05D003219 ORTHO05D005190 2.1e-24 116.7 90 58.9
Sopen01g034000 Solanum pennellii HOM05D003219 ORTHO05D005190 2.1e-24 116.7 90 58.9
PGSC0003DMG400006877 Solanum tuberosum HOM05D003219 ORTHO05D005190 2.1e-24 116.7 90 58.9
Lsat_1_v5_gn_1_110001 Lactuca sativa HOM05D003219 ORTHO05D005190 2.8e-24 116.3 90 60.0
Phvul.006G191500 Phaseolus vulgaris HOM05D003219 ORTHO05D005190 2.8e-24 116.3 90 60.0
QL03p054350 Quercus lobata HOM05D003219 ORTHO05D005190 2.8e-24 116.3 90 61.1
SGA_v2.0_scaffold5G02978 Striga asiatica HOM05D003219 ORTHO05D005190 2.8e-24 116.3 88 62.5
TAR369G0028 Trochodendron aralioides HOM05D003219 ORTHO05D005190 2.8e-24 116.3 90 61.1
VMungo0540G2265 Vigna mungo HOM05D003219 ORTHO05D005190 2.8e-24 116.3 90 60.0
arahy.Tifrunner.gnm1.ann1.AH329K Arachis hypogaea HOM05D003219 ORTHO05D005190 3.6e-24 115.9 90 60.0
arahy.Tifrunner.gnm1.ann1.U3KJRG Arachis hypogaea HOM05D003219 ORTHO05D005190 3.6e-24 115.9 90 60.0
Cfa000363 Carpinus fangiana HOM05D003219 ORTHO05D005190 3.6e-24 115.9 90 60.0
Nn2g13017 Nelumbo nucifera HOM05D003219 ORTHO05D005190 3.6e-24 115.9 90 60.0
ATR0564G130 Amborella trichopoda HOM05D003219 ORTHO05D005190 4.7e-24 115.5 90 60.0
Prupe.5G013200 Prunus persica HOM05D003219 ORTHO05D005190 4.7e-24 115.5 90 60.0
MD05G1324400 Malus domestica HOM05D003219 ORTHO05D005190 6.1e-24 115.2 90 61.1
MD10G1302200 Malus domestica HOM05D003219 ORTHO05D005190 6.1e-24 115.2 90 61.1
vmacro03828 Vaccinium macrocarpon HOM05D003219 ORTHO05D005190 6.1e-24 115.2 90 61.1
Glyma.13G245700 Glycine max HOM05D003219 ORTHO05D005190 8.0e-24 114.8 90 58.9
Hma1.2p1_0144F.1_g064800 Hydrangea macrophylla HOM05D003219 ORTHO05D005190 8.0e-24 114.8 90 60.0
Phvul.006G191100 Phaseolus vulgaris HOM05D003219 ORTHO05D005190 8.0e-24 114.8 90 58.9
Sed0027994 Sechium edule HOM05D003219 ORTHO05D005190 8.0e-24 114.8 90 58.9
AT5G28740 Arabidopsis thaliana HOM05D003219 ORTHO05D005190 1.0e-23 114.4 90 60.0
Carub.0006s2599 Capsella rubella HOM05D003219 ORTHO05D005190 1.0e-23 114.4 90 60.0
CARHR185310 Cardamine hirsuta HOM05D003219 ORTHO05D005190 1.0e-23 114.4 90 60.0
SEGI_12412 Sequoiadendron giganteum HOM05D003219 ORTHO05D005190 1.0e-23 114.4 90 60.0
SEGI_14928 Sequoiadendron giganteum HOM05D003219 ORTHO05D005190 1.0e-23 114.4 90 60.0
Cpa.g.sc27.112 Carica papaya HOM05D003219 ORTHO05D005190 1.4e-23 114.0 90 57.8
Ca_00267_v3 Cicer arietinum L. HOM05D003219 ORTHO05D005190 1.4e-23 114.0 90 57.8
Lalb_Chr23g0271291 Lupinus albus HOM05D003219 ORTHO05D005190 1.4e-23 114.0 90 60.0
Manes.16G021600 Manihot esculenta HOM05D003219 ORTHO05D005190 1.4e-23 114.0 90 58.9
Eucgr.E03448 Eucalyptus grandis HOM05D003219 ORTHO05D005190 1.8e-23 113.6 90 58.9
Glyma.15G068100 Glycine max HOM05D003219 ORTHO05D005190 2.3e-23 113.2 90 58.9
Sp2g20070 Schrenkiella parvula HOM05D003219 ORTHO05D005190 2.3e-23 113.2 90 58.9
TPR.G16428 Trifolium pratense HOM05D003219 ORTHO05D005190 2.3e-23 113.2 90 57.8
Aqoxy5G02588 Aquilegia oxysepala HOM05D003219 ORTHO05D005190 3.0e-23 112.8 90 58.9
Dinv40503 Davidia involucrata HOM05D003219 ORTHO05D005190 3.0e-23 112.8 90 58.9
PGR042G1909 Punica granatum HOM05D003219 ORTHO05D005190 3.0e-23 112.8 90 58.9
SHI02082 Sapria himalayana HOM05D003219 ORTHO05D005190 3.0e-23 112.8 90 57.8
BraA02t08811Z Brassica rapa HOM05D003219 ORTHO05D005190 4.0e-23 112.5 90 58.9
PSO339G3037 Papaver somniferum HOM05D003219 ORTHO05D005190 4.0e-23 112.5 90 58.9
PSO384G2756 Papaver somniferum HOM05D003219 ORTHO05D005190 4.0e-23 112.5 90 58.9
RcHm_v2.0_Chr7g0193971 Rosa chinensis HOM05D003219 ORTHO05D005190 4.0e-23 112.5 90 57.8
AL6G40770 Arabidopsis lyrata HOM05D003219 ORTHO05D005190 5.2e-23 112.1 90 58.9
Thhalv10003625m.g Eutrema salsugineum HOM05D003219 ORTHO05D005190 5.2e-23 112.1 90 58.9
FvH4_3g04150 Fragaria vesca HOM05D003219 ORTHO05D005190 5.2e-23 112.1 90 57.8
FAN11G2522 Fragaria x ananassa HOM05D003219 ORTHO05D005190 5.2e-23 112.1 90 57.8
FAN16G0751 Fragaria x ananassa HOM05D003219 ORTHO05D005190 5.2e-23 112.1 90 57.8
FAN21G1982 Fragaria x ananassa HOM05D003219 ORTHO05D005190 5.2e-23 112.1 90 57.8
FAN25G3232 Fragaria x ananassa HOM05D003219 ORTHO05D005190 5.2e-23 112.1 90 57.8
ECA247G0108 Erigeron canadensis HOM05D003219 ORTHO05D005190 6.8e-23 111.7 98 58.2
Psat1g208040 Pisum sativum HOM05D003219 ORTHO05D005190 6.8e-23 111.7 90 56.7
RcHm_v2.0_Chr5g0006601 Rosa chinensis HOM05D003219 ORTHO05D005190 6.8e-23 111.7 90 57.8
HPP92_001897 Vanilla planifolia HOM05D003219 ORTHO05D005190 6.8e-23 111.7 90 57.8
Lj6g0004744 Lotus japonicus HOM05D003219 ORTHO05D005190 8.9e-23 111.3 90 56.7
THA.LOC104799261 Tarenaya hassleriana HOM05D003219 ORTHO05D005190 8.9e-23 111.3 90 58.9
BcaB07g34174 Brassica carinata HOM05D003219 ORTHO05D005190 1.2e-22 110.9 90 57.8
BcaC03g17751 Brassica carinata HOM05D003219 ORTHO05D005190 1.2e-22 110.9 90 57.8
A02p38300 Brassica napus HOM05D003219 ORTHO05D005190 1.2e-22 110.9 90 57.8
C02p57630 Brassica napus HOM05D003219 ORTHO05D005190 1.2e-22 110.9 90 57.8
BolC2t11836H Brassica oleracea HOM05D003219 ORTHO05D005190 1.2e-22 110.9 90 57.8
Lalb_Chr11g0066351 Lupinus albus HOM05D003219 ORTHO05D005190 1.2e-22 110.9 90 57.8
Lj9A630T39 Lonicera japonica HOM05D003219 ORTHO05D005190 1.5e-22 110.5 90 56.7
Medtr2g012310 Medicago truncatula HOM05D003219 ORTHO05D005190 1.5e-22 110.5 90 55.6
TWI63G1169 Tripterygium wilfordii HOM05D003219 ORTHO05D005190 2.6e-22 109.8 90 57.8
Potri.004G035600 Populus trichocarpa HOM05D003219 ORTHO05D005190 3.4e-22 109.4 90 55.6
AL2G15710 Arabidopsis lyrata HOM05D003219 ORTHO05D005190 4.4e-22 109.0 93 57.0
Pp3c1_10210 Physcomitrium patens HOM05D003219 ORTHO05D005190 4.4e-22 109.0 90 55.6
Sabra04G0021400 Salix brachista HOM05D003219 ORTHO05D005190 4.4e-22 109.0 90 55.6
HPP92_001864 Vanilla planifolia HOM05D003219 ORTHO05D005190 4.4e-22 109.0 90 56.7
ECA240G1068 Erigeron canadensis HOM05D003219 ORTHO05D005190 2.2e-21 106.7 90 55.6
AagrBONN_evm.TU.Sc2ySwM_344.294 Anthoceros agrestis HOM05D003219 ORTHO05D005190 3.7e-21 105.9 90 56.7
Mapoly0119s0057 Marchantia polymorpha HOM05D003219 ORTHO05D005190 6.4e-21 105.1 90 53.3
DCAR_003206 Daucus carota HOM05D003219 ORTHO05D005190 1.4e-20 104.0 90 53.3
Oeu015223.1 Olea europaea HOM05D003219 ORTHO05D005190 1.4e-20 104.0 82 58.5
Migut.O00672 Erythranthe guttata HOM05D003219 ORTHO05D005190 1.8e-20 103.6 76 63.2
Prupe.4G035800 Prunus persica HOM05D003219 ORTHO05D005190 1.8e-20 103.6 76 61.8
Rhsim10G0099900 Rhododendron simsii HOM05D003219 ORTHO05D005190 2.4e-20 103.2 90 57.8
COL.COLO4_30962 Corchorus olitorius HOM05D003219 ORTHO05D005190 3.2e-20 102.8 90 54.4
Aqoxy7G03800 Aquilegia oxysepala HOM05D003219 ORTHO05D005190 7.0e-20 101.7 112 48.2
Rhsim13G0173900 Rhododendron simsii HOM05D003219 ORTHO05D005190 7.0e-20 101.7 76 61.8
DCAR_025033 Daucus carota HOM05D003219 ORTHO05D005190 9.2e-20 101.3 90 51.1
Haze_06562 Corylus avellana HOM05D003219 ORTHO05D005190 1.6e-19 100.5 76 59.2
CDE04G1938 Ceratophyllum demersum HOM05D003219 ORTHO05D005190 6.0e-19 98.6 86 54.7
RhsimUnG0236300 Rhododendron simsii HOM05D003219 ORTHO05D005190 8.6e-18 94.7 91 51.6
ATR0753G003 Amborella trichopoda HOM05D003219 ORTHO05D005190 1.9e-17 93.6 74 55.4
Rhsim07G0241400 Rhododendron simsii HOM05D003219 ORTHO05D005190 7.3e-17 91.7 91 50.5
FAN21G3557 Fragaria x ananassa HOM05D003219 ORTHO05D005190 1.6e-16 90.5 91 52.7
FAN11G2280 Fragaria x ananassa HOM05D003219 ORTHO05D005190 3.6e-16 89.4 91 50.5
FAN16G0728 Fragaria x ananassa HOM05D003219 ORTHO05D005190 3.6e-16 89.4 91 50.5
FvH4_3g03910 Fragaria vesca HOM05D003219 ORTHO05D005190 4.7e-16 89.0 91 50.5
ATR0753G142 Amborella trichopoda HOM05D003219 ORTHO05D005190 1.8e-15 87.0 88 46.6
BcaNung05343 Brassica carinata HOM05D003219 ORTHO05D005190 2.3e-15 86.7 69 52.2
BcaC04g22273 Brassica carinata HOM05D002061 ORTHO05D032307 1.2e-14 84.3 69 52.2
THA.LOC104798482 Tarenaya hassleriana HOM05D003219 ORTHO05D406890 1.2e-14 84.3 87 48.3
Dinv39810 Davidia involucrata HOM05D003219 ORTHO05D005190 4.4e-14 82.4 90 46.7
C09p21320 Brassica napus HOM05D002061 ORTHO05D032307 7.5e-14 81.6 69 50.7
Os06g0235800 Oryza sativa ssp. japonica HOM05D003219 ORTHO05D005190 9.8e-14 81.3 91 44.0
CBR_g3193 Chara braunii HOM05D003219 ORTHO05D005190 3.2e-12 76.3 69 52.2
SMO358G0499 Selaginella moellendorffii HOM05D003219 ORTHO05D005190 3.2e-12 76.3 89 41.6
TPR.G36818 Trifolium pratense HOM05D003219 ORTHO05D005190 5.4e-12 75.5 314 23.9
Cre12.g513500 Chlamydomonas reinhardtii HOM05D003219 ORTHO05D005190 9.2e-12 74.7 77 44.2
Manes.17G039900 Manihot esculenta HOM05D003219 ORTHO05D005190 7.8e-11 71.6 148 33.8
A06p38060 Brassica napus HOM05D003219 ORTHO05D024673 3.0e-10 69.7 56 57.1
BraA06t26721Z Brassica rapa HOM05D003219 ORTHO05D024673 3.0e-10 69.7 64 54.7
PRCOL_00006288 Prasinoderma coloniale HOM05D003219 ORTHO05D005190 3.0e-10 69.7 66 47.0
Actinidia05585 Actinidia chinensis HOM05D003219 ORTHO05D005190 3.9e-10 69.3 154 33.1
SEGI_15939 Sequoiadendron giganteum HOM05D003219 ORTHO05D026562 1.9e-09 67.0 160 34.4
VMungo0464G0452 Vigna mungo HOM05D003219 ORTHO05D005190 1.1e-07 61.2 140 31.4


User provided reference genes

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