Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G03891 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 5.5e-68 260.8 126 100.0
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 3.1e-26 122.1 93 61.3
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 2.4e-23 112.5 88 56.8
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 1.6e-22 109.8 92 52.2
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 2.7e-22 109.0 89 56.2
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 4.6e-22 108.2 92 51.1
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 6.0e-22 107.8 88 54.5
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 1.0e-21 107.1 92 54.3
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 1.0e-21 107.1 89 53.9
Peaxi162Scf00545g00002 Petunia axillaris HOM05D004267 ORTHO05D005267 1.3e-21 106.7 82 57.3
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 2.3e-21 105.9 89 53.9
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 3.0e-21 105.5 95 52.6
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 3.0e-21 105.5 91 53.8
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 5.1e-21 104.8 92 52.2
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 6.6e-21 104.4 95 52.6
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 6.6e-21 104.4 95 52.6
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 6.6e-21 104.4 95 53.7
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 6.6e-21 104.4 92 52.2
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 8.7e-21 104.0 95 51.6
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 1.1e-20 103.6 88 54.5
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 1.1e-20 103.6 89 51.7
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 1.1e-20 103.6 89 52.8
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 1.5e-20 103.2 95 52.6
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 1.5e-20 103.2 89 50.6
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 1.5e-20 103.2 89 52.8
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 1.5e-20 103.2 89 50.6
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 1.5e-20 103.2 89 52.8
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 1.9e-20 102.8 89 51.7
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 1.9e-20 102.8 95 51.6
arahy.Tifrunner.gnm1.ann1.BB3MLG Arachis hypogaea HOM05D004267 ORTHO05D005267 1.9e-20 102.8 86 55.8
arahy.Tifrunner.gnm1.ann1.JED36R Arachis hypogaea HOM05D004267 ORTHO05D005267 1.9e-20 102.8 86 55.8
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 1.9e-20 102.8 89 52.8
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 1.9e-20 102.8 89 53.9
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 1.9e-20 102.8 89 52.8
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 2.5e-20 102.4 95 51.6
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 2.5e-20 102.4 89 50.6
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 2.5e-20 102.4 92 50.0
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 2.5e-20 102.4 89 52.8
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 3.3e-20 102.1 89 49.4
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 4.3e-20 101.7 95 51.6
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 4.3e-20 101.7 95 51.6
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 4.3e-20 101.7 95 50.5
Zm00001eb159830 Zea mays HOM05D004267 ORTHO05D005267 4.3e-20 101.7 85 55.3
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 5.6e-20 101.3 89 51.7
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 5.6e-20 101.3 89 51.7
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 5.6e-20 101.3 89 50.6
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 5.6e-20 101.3 89 51.7
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 7.3e-20 100.9 95 51.6
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 7.3e-20 100.9 89 53.9
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 7.3e-20 100.9 89 49.4
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 9.6e-20 100.5 95 50.5
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 9.6e-20 100.5 89 52.8
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 9.6e-20 100.5 91 53.8
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 1.3e-19 100.1 92 48.9
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 1.3e-19 100.1 92 46.7
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 1.3e-19 100.1 89 50.6
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 1.3e-19 100.1 88 50.0
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 1.3e-19 100.1 89 51.7
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 1.6e-19 99.8 89 49.4
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 1.6e-19 99.8 89 51.7
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 2.1e-19 99.4 89 53.9
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 2.8e-19 99.0 107 43.9
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 2.8e-19 99.0 92 48.9
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 2.8e-19 99.0 86 53.5
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 2.8e-19 99.0 89 49.4
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 2.8e-19 99.0 89 52.8
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 2.8e-19 99.0 89 52.8
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 2.8e-19 99.0 89 50.6
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 2.8e-19 99.0 89 52.8
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 3.6e-19 98.6 92 52.2
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 3.6e-19 98.6 89 50.6
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 3.6e-19 98.6 87 47.1
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 4.8e-19 98.2 89 48.3
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 4.8e-19 98.2 86 50.0
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 6.2e-19 97.8 89 49.4
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 6.2e-19 97.8 88 48.9
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 6.2e-19 97.8 89 53.9
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 8.1e-19 97.4 88 48.9
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 1.4e-18 96.7 88 50.0
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 1.4e-18 96.7 89 50.6
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 1.8e-18 96.3 86 52.3
Gohir.D05G045900 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.8e-18 96.3 86 51.2
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 2.4e-18 95.9 89 47.2
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 4.0e-18 95.1 89 48.3
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 4.0e-18 95.1 89 47.2
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 5.3e-18 94.7 88 46.6
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 5.3e-18 94.7 88 46.6
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 5.3e-18 94.7 89 50.6
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 5.3e-18 94.7 89 49.4
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 6.9e-18 94.4 89 47.2
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 6.9e-18 94.4 89 49.4
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 9.0e-18 94.0 89 47.2
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 9.0e-18 94.0 88 46.6
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.2e-17 93.6 91 46.2
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 1.5e-17 93.2 89 47.2
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 1.5e-17 93.2 107 46.7
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 2.0e-17 92.8 95 50.5
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 2.6e-17 92.4 89 44.9
DCAR_004449 Daucus carota HOM05D004267 ORTHO05D005267 3.4e-17 92.0 89 49.4
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 3.4e-17 92.0 89 46.1
Aqoxy7G03867 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 4.4e-17 91.7 94 42.6
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 5.8e-17 91.3 89 51.7
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 7.6e-17 90.9 89 46.1
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 1.3e-16 90.1 96 42.7
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 1.7e-16 89.7 92 46.7
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 3.8e-16 88.6 59 66.1
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 3.8e-16 88.6 93 45.2
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 6.4e-16 87.8 89 46.1
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 8.4e-16 87.4 93 45.2
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 1.4e-15 86.7 92 40.2
DCAR_004448 Daucus carota HOM05D004267 ORTHO05D005267 2.4e-15 85.9 91 49.5
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 2.4e-15 85.9 89 44.9
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 2.4e-15 85.9 89 44.9
Cpa.g.sc78.12 Carica papaya HOM05D004267 ORTHO05D005267 3.2e-15 85.5 86 47.7
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 4.2e-15 85.1 89 48.3
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 5.4e-15 84.7 102 41.2
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 9.3e-15 84.0 93 45.2
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 1.2e-14 83.6 89 44.9
Sopen11g028740 Solanum pennellii HOM05D004267 ORTHO05D005267 1.6e-14 83.2 86 48.8
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 3.5e-14 82.0 77 50.6
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 1.3e-13 80.1 64 54.7
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.7e-13 79.7 93 41.9
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.7e-13 79.7 93 41.9
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 2.3e-13 79.3 63 54.0
Peaxi162Scf00545g00001 Petunia axillaris HOM05D004267 ORTHO05D005267 2.3e-13 79.3 76 47.4
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 3.9e-13 78.6 92 39.1
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 5.1e-13 78.2 78 44.9
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 8.7e-13 77.4 87 42.5
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.9e-12 76.3 88 43.2
MD08G1073900 Malus domestica HOM05D004267 ORTHO05D005267 2.5e-12 75.9 86 43.0
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 3.3e-12 75.5 61 55.7
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 7.4e-12 74.3 93 39.8
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 9.6e-12 73.9 90 44.4
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 1.3e-11 73.6 59 54.2
Oeu057699.1 Olea europaea HOM05D004267 ORTHO05D005267 2.8e-11 72.4 50 64.0
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 3.6e-11 72.0 81 44.4
Nitab4.5_0001927g0070 Nicotiana tabacum HOM05D004267 ORTHO05D005267 1.1e-10 70.5 60 50.0
Rhsim01G0086000 Rhododendron simsii HOM05D004267 ORTHO05D005267 1.4e-10 70.1 60 53.3
FAN15G2319 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.5e-09 66.6 80 43.8
GSVIVG01016838001 Vitis vinifera HOM05D004267 ORTHO05D005267 3.4e-09 65.5 87 36.8
GSVIVG01016840001 Vitis vinifera HOM05D004267 ORTHO05D005267 4.5e-09 65.1 87 37.9
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 8.4e-08 60.8 50 48.0
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 1.9e-07 59.7 50 48.0
Nitab4.5_0001927g0060 Nicotiana tabacum HOM05D004267 ORTHO05D005267 1.2e-06 57.0 48 47.9
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 2.7e-06 55.8 53 45.3


User provided reference genes

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