Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 4.8e-304 1047.0 505 100.0
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 1.0e-229 800.0 476 77.3
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 7.5e-225 783.9 466 76.2
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 9.8e-225 783.5 508 72.8
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 2.2e-224 782.3 508 72.2
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 8.3e-224 780.4 526 69.8
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 2.7e-222 775.4 428 80.6
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 1.0e-221 773.5 428 79.9
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 3.9e-221 771.5 460 77.8
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 8.6e-221 770.4 522 68.8
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 8.6e-221 770.4 513 69.2
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 1.5e-220 769.6 458 76.0
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 2.5e-220 768.8 513 69.0
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 3.3e-220 768.5 512 69.9
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 1.6e-219 766.1 466 74.9
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 3.6e-219 765.0 446 76.5
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 4.7e-219 764.6 465 74.0
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 4.7e-219 764.6 475 73.7
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 6.2e-219 764.2 507 70.4
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 1.1e-218 763.5 428 78.7
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 1.8e-218 762.7 428 78.5
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 2.3e-218 762.3 458 75.5
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 3.1e-218 761.9 458 74.9
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 4.0e-218 761.5 459 74.9
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 5.2e-218 761.1 428 80.6
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 2.6e-217 758.8 467 74.3
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 7.6e-217 757.3 482 72.6
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 1.1e-215 753.4 428 79.0
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 1.4e-215 753.1 480 72.3
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 1.9e-215 752.7 467 73.0
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 2.4e-215 752.3 454 74.4
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 2.4e-215 752.3 458 74.7
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 2.4e-215 752.3 441 75.7
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 1.6e-214 749.6 464 72.8
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 2.7e-214 748.8 427 77.3
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 6.0e-214 747.7 458 74.0
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 1.7e-213 746.1 463 72.4
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 1.1e-212 743.4 467 72.2
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 1.9e-212 742.7 429 76.9
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 2.5e-212 742.3 428 76.6
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 5.6e-212 741.1 441 75.3
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 7.3e-212 740.7 471 71.1
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 9.6e-212 740.3 463 72.4
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 4.7e-211 738.0 460 72.4
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 4.7e-211 738.0 470 71.9
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 1.1e-210 736.9 447 73.8
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 1.4e-210 736.5 449 74.2
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 4.0e-210 734.9 460 72.0
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 4.0e-210 734.9 465 70.8
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 6.8e-210 734.2 444 73.4
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 1.2e-209 733.4 429 74.8
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 1.2e-209 733.4 449 72.4
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 2.0e-209 732.6 429 75.8
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 4.4e-209 731.5 447 72.9
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 4.4e-209 731.5 429 75.8
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 5.8e-209 731.1 468 70.5
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 1.3e-208 729.9 460 71.7
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 1.3e-208 729.9 445 73.7
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 2.2e-208 729.2 462 71.2
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 2.9e-208 728.8 462 70.6
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 6.4e-208 727.6 425 75.8
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 6.4e-208 727.6 466 71.2
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 6.4e-208 727.6 433 74.8
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 1.1e-207 726.9 466 71.2
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 1.4e-207 726.5 459 71.7
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 1.4e-207 726.5 461 71.1
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 1.4e-207 726.5 459 72.8
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 2.4e-207 725.7 423 75.9
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 3.2e-207 725.3 460 71.5
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 4.2e-207 724.9 478 69.9
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 4.2e-207 724.9 480 69.4
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 2.1e-206 722.6 517 66.3
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 6.0e-206 721.1 467 70.9
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 6.0e-206 721.1 467 70.9
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 1.0e-205 720.3 461 69.8
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 1.3e-205 719.9 461 69.8
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 1.7e-205 719.5 537 64.6
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 3.0e-205 718.8 457 71.8
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 1.1e-204 716.8 457 71.6
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 7.3e-204 714.1 433 74.6
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 1.1e-202 710.3 468 69.7
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 4.0e-202 708.4 490 68.2
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 2.0e-201 706.1 425 73.2
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 2.2e-200 702.6 553 61.5
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 2.9e-200 702.2 475 67.8
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 3.8e-200 701.8 488 67.2
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.4e-199 699.9 465 68.6
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 2.1e-198 696.0 424 72.4
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 1.7e-197 693.0 433 71.4
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 4.0e-194 681.8 450 66.7
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 5.3e-194 681.4 427 71.2
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 1.8e-189 666.4 407 74.7
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 2.3e-189 666.0 433 72.7
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 1.9e-188 662.9 470 65.7
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 1.3e-187 660.2 502 62.4
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 9.0e-186 654.1 426 70.2
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 3.4e-185 652.1 378 77.5
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 1.0e-184 650.6 456 67.1
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 6.0e-182 641.3 367 76.8
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 1.0e-176 624.0 380 74.2
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 1.0e-176 624.0 380 74.2
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 6.5e-176 621.3 362 77.1
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 3.2e-175 619.0 428 67.3
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 9.7e-172 607.4 378 73.5
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 3.1e-170 602.4 428 65.7
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 2.9e-168 595.9 380 72.6
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 2.5e-167 592.8 417 64.5
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 2.1e-166 589.7 325 80.0
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 3.3e-164 582.4 518 56.9
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 2.6e-161 572.8 437 59.7
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 7.7e-161 571.2 408 66.2
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 3.2e-159 565.8 430 59.5
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 1.2e-158 563.9 433 63.3
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 9.7e-148 527.7 425 56.2
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 4.5e-145 518.8 396 58.1
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 1.8e-141 506.9 320 68.8
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 5.2e-141 505.4 434 59.0
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 1.5e-132 477.2 270 77.8
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 2.0e-132 476.9 418 54.3
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 8.6e-120 434.9 252 77.0
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 1.9e-106 390.6 455 43.1
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 5.4e-106 389.0 218 78.4
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 3.4e-84 316.6 184 77.2
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 2.4e-74 283.9 422 39.3
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 8.7e-72 275.4 162 74.7
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 9.0e-69 265.4 148 78.4
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 2.9e-67 260.4 373 39.9
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 9.3e-58 228.8 168 66.1
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 1.2e-57 228.4 155 69.0
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 2.8e-54 217.2 110 81.8
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 1.1e-50 205.3 148 60.1
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 2.3e-48 197.6 118 74.6
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 1.2e-41 175.3 109 71.6
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 2.0e-39 167.9 149 55.0
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.7e-38 164.9 185 47.6
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 8.8e-32 142.5 186 43.5
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 7.0e-21 106.3 61 77.0
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 8.8e-16 89.4 60 60.0
CDE02G1858 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.0e-08 65.9 118 38.1
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 7.5e-07 59.7 41 58.5


User provided reference genes

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