Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 4.0e-66 255.0 164 100.0
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 1.6e-19 100.1 80 63.8
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 4.7e-19 98.6 124 50.0
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 4.7e-19 98.6 122 48.4
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 6.2e-19 98.2 98 56.1
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 6.2e-19 98.2 112 48.2
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 1.1e-18 97.4 67 67.2
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 1.8e-18 96.7 135 51.1
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 2.4e-18 96.3 87 59.8
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 2.4e-18 96.3 65 72.3
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 4.0e-18 95.5 87 59.8
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 4.0e-18 95.5 87 59.8
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 4.0e-18 95.5 87 59.8
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 4.0e-18 95.5 113 49.6
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 4.0e-18 95.5 88 59.1
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 5.2e-18 95.1 123 49.6
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 6.8e-18 94.7 129 49.6
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 6.8e-18 94.7 118 49.2
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 6.8e-18 94.7 118 49.2
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 6.8e-18 94.7 118 49.2
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 6.8e-18 94.7 58 74.1
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 6.8e-18 94.7 65 72.3
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 6.8e-18 94.7 108 53.7
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 1.2e-17 94.0 119 49.6
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 1.2e-17 94.0 114 50.9
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 1.2e-17 94.0 119 49.6
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.2e-17 94.0 106 50.0
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 3.4e-17 92.4 58 72.4
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 7.6e-17 91.3 122 45.9
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 7.6e-17 91.3 127 46.5
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 1.3e-16 90.5 97 53.6
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.7e-16 90.1 123 46.3
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.7e-16 90.1 123 46.3
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 2.9e-16 89.4 127 45.7
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 3.8e-16 89.0 64 67.2
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 3.8e-16 89.0 56 75.0
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 4.9e-16 88.6 60 71.7
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 8.4e-16 87.8 84 57.1
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 1.1e-15 87.4 126 45.2
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 1.1e-15 87.4 50 78.0
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 1.1e-15 87.4 50 78.0
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 1.4e-15 87.0 117 47.9
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 1.9e-15 86.7 58 69.0
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 2.4e-15 86.3 98 51.0
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 3.2e-15 85.9 128 47.7
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 7.1e-15 84.7 115 53.0
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 9.2e-15 84.3 133 46.6
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 9.2e-15 84.3 59 66.1
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 9.2e-15 84.3 65 63.1
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 1.2e-14 84.0 86 53.5
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 1.6e-14 83.6 115 47.8
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 2.1e-14 83.2 77 57.1
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.1e-14 83.2 106 47.2
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 2.1e-14 83.2 51 76.5
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 2.7e-14 82.8 124 46.8
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 2.7e-14 82.8 121 44.6
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 3.5e-14 82.4 111 49.5
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 4.6e-14 82.0 106 47.2
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 6.0e-14 81.6 125 48.8
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 7.8e-14 81.3 106 46.2
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 1.0e-13 80.9 61 60.7
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.0e-13 80.9 106 46.2
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.7e-13 80.1 108 46.3
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 1.7e-13 80.1 64 64.1
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 2.3e-13 79.7 111 49.5
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 5.1e-13 78.6 62 66.1
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 6.6e-13 78.2 59 64.4
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 6.6e-13 78.2 45 77.8
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 6.6e-13 78.2 111 44.1
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 1.1e-12 77.4 103 50.5
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 1.1e-12 77.4 97 49.5
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 1.5e-12 77.0 48 75.0
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 2.5e-12 76.3 130 42.3
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.3e-12 75.9 56 60.7
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.3e-12 75.9 54 63.0
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 3.3e-12 75.9 54 63.0
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 3.3e-12 75.9 54 66.7
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 4.3e-12 75.5 112 44.6
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 4.3e-12 75.5 53 66.0
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 4.3e-12 75.5 58 63.8
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 5.6e-12 75.1 49 69.4
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 7.3e-12 74.7 112 44.6
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 7.3e-12 74.7 45 73.3
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 7.3e-12 74.7 45 73.3
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 9.6e-12 74.3 133 40.6
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 9.6e-12 74.3 76 52.6
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 1.2e-11 73.9 45 73.3
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.6e-11 73.6 60 58.3
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 1.6e-11 73.6 88 46.6
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 2.1e-11 73.2 112 46.4
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 2.1e-11 73.2 50 68.0
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 2.8e-11 72.8 72 52.8
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 2.8e-11 72.8 58 62.1
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 2.8e-11 72.8 45 77.8
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 3.6e-11 72.4 45 73.3
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 4.7e-11 72.0 43 74.4
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 4.7e-11 72.0 83 48.2
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 6.2e-11 71.6 42 76.2
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 6.2e-11 71.6 55 61.8
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 6.2e-11 71.6 53 62.3
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 6.2e-11 71.6 42 76.2
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 1.1e-10 70.9 101 48.5
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 1.1e-10 70.9 44 72.7
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 1.1e-10 70.9 50 66.0
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 1.4e-10 70.5 45 68.9
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 1.4e-10 70.5 72 50.0
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 1.4e-10 70.5 117 40.2
Oeu024066.2 Olea europaea HOM05D005853 ORTHO05D007308 5.2e-10 68.6 178 33.7
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 6.9e-10 68.2 110 40.9
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 9.0e-10 67.8 40 77.5
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 9.0e-10 67.8 43 69.8
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 1.2e-09 67.4 53 62.3
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 1.2e-09 67.4 53 62.3
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 1.5e-09 67.0 54 63.0
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 1.5e-09 67.0 66 56.1
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 2.0e-09 66.6 52 61.5
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 2.6e-09 66.2 42 71.4
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 3.4e-09 65.9 98 42.9
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 4.4e-09 65.5 74 47.3
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 4.4e-09 65.5 42 73.8
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 9.9e-09 64.3 123 44.7
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 2.2e-08 63.2 50 60.0
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 2.2e-08 63.2 35 74.3
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 3.8e-08 62.4 88 45.5
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 4.9e-08 62.0 103 41.7
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 1.1e-07 60.8 113 34.5
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 1.4e-07 60.5 114 43.9
Sabra18G0067400 Salix brachista HOM05D005853 ORTHO05D007308 2.4e-07 59.7 52 53.8


User provided reference genes

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