Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G03766 Aquilegia oxysepala HOM05D007439 ORTHO05D009294 1.9e-205 719.9 706 100.0
PSO210G5823 Papaver somniferum HOM05D007439 ORTHO05D009294 3.3e-85 320.5 670 72.8
PSO210G3018 Papaver somniferum HOM05D007439 ORTHO05D009294 6.9e-75 286.2 619 75.4
Gohir.A05G145400 Gossypium hirsutum HOM05D007439 ORTHO05D009294 5.9e-58 229.9 680 70.0
Ah.11g038960 Amaranthus hybridus HOM05D007439 ORTHO05D009294 2.7e-55 221.1 651 71.6
PGR042G2360 Punica granatum HOM05D007439 ORTHO05D009294 1.5e-53 215.3 689 67.5
Prupe.4G111800 Prunus persica HOM05D007439 ORTHO05D009294 3.2e-48 197.6 653 71.7
Sed0017437 Sechium edule HOM05D007439 ORTHO05D009294 1.6e-47 195.3 662 69.9
DCAR_003780 Daucus carota HOM05D007439 ORTHO05D009294 9.7e-45 186.0 254 42.5
AUR62035769 Chenopodium quinoa HOM05D007439 ORTHO05D009294 1.7e-44 185.3 678 68.9
CsaV3_1G046310 Cucumis sativus L. HOM05D007439 ORTHO05D009294 2.2e-44 184.9 663 69.4
TAR633G0007 Trochodendron aralioides HOM05D007439 ORTHO05D009294 8.2e-44 183.0 663 65.5
MELO3C021752.2 Cucumis melo HOM05D007439 ORTHO05D009294 1.4e-43 182.2 662 69.8
Eucgr.E01795 Eucalyptus grandis HOM05D007439 ORTHO05D009294 4.1e-43 180.6 616 71.6
SGA_v2.0_scaffold298G47685 Striga asiatica HOM05D007439 ORTHO05D009294 2.0e-42 178.3 667 62.5
Duzib235G1301 Durio zibethinus HOM05D007439 ORTHO05D009294 5.9e-42 176.8 674 68.4
Gorai.009G151900 Gossypium raimondii HOM05D007439 ORTHO05D009294 2.9e-41 174.5 677 67.8
Gohir.D05G147800 Gossypium hirsutum HOM05D007439 ORTHO05D009294 3.8e-41 174.1 677 67.8
Eucgr.E01800 Eucalyptus grandis HOM05D007439 ORTHO05D009294 8.5e-41 172.9 177 44.1
ECA238G3489 Erigeron canadensis HOM05D000031 ORTHO05D000030 1.6e-39 168.7 614 72.6
AUR62034958 Chenopodium quinoa HOM05D007439 ORTHO05D009294 3.6e-39 167.5 616 72.1
Manes.15G044700 Manihot esculenta HOM05D007439 ORTHO05D009294 3.6e-39 167.5 704 66.3
Actinidia22395 Actinidia chinensis HOM05D007439 ORTHO05D009294 4.7e-39 167.2 700 67.0
Psat0s929g0160 Pisum sativum HOM05D007439 ORTHO05D009294 5.2e-38 163.7 661 68.4
Glyma.09G242500 Glycine max HOM05D007439 ORTHO05D009294 1.1e-37 162.5 655 68.7
Ciclev10014445m.g Citrus clementina HOM05D007439 ORTHO05D009294 7.5e-37 159.8 209 41.6
MD05G1251800 Malus domestica HOM05D007439 ORTHO05D009294 7.5e-37 159.8 656 69.2
Lalb_Chr01g0021581 Lupinus albus HOM05D007439 ORTHO05D009294 1.1e-35 156.0 652 68.7
Cfa000712 Carpinus fangiana HOM05D007439 ORTHO05D009294 1.8e-35 155.2 683 67.3
Eucgr.E01870 Eucalyptus grandis HOM05D007439 ORTHO05D009294 3.1e-35 154.5 160 41.9
Phvul.008G046300 Phaseolus vulgaris HOM05D007439 ORTHO05D009294 3.1e-35 154.5 701 65.5
FAN25G2844 Fragaria x ananassa HOM05D002343 ORTHO05D004258 4.1e-35 154.1 643 67.2
Eucgr.E01847 Eucalyptus grandis HOM05D007439 ORTHO05D009294 1.2e-34 152.5 150 44.0
TWI38G1636 Tripterygium wilfordii HOM05D007439 ORTHO05D009294 4.5e-34 150.6 172 45.3
Haze_06039 Corylus avellana HOM05D007439 ORTHO05D009294 5.9e-34 150.2 171 49.1
Dinv02254 Davidia involucrata HOM05D007439 ORTHO05D009294 3.8e-33 147.5 147 50.3
Potri.015G121700 Populus trichocarpa HOM05D007439 ORTHO05D009294 3.8e-33 147.5 673 67.6
Rhsim08G0175300 Rhododendron simsii HOM05D007439 ORTHO05D009294 5.0e-33 147.1 178 47.2
Ca_04050_v3 Cicer arietinum L. HOM05D007439 ORTHO05D009294 1.1e-32 146.0 153 49.0
Lj3g0009249 Lotus japonicus HOM05D007439 ORTHO05D009294 1.5e-32 145.6 159 48.4
CiPaw.09G077400 Carya illinoinensis HOM05D007439 ORTHO05D009294 1.9e-32 145.2 674 67.1
HanXRQChr14g0447351 Helianthus annuus HOM05D007439 ORTHO05D009294 1.9e-32 145.2 170 46.5
HPP92_005808 Vanilla planifolia HOM05D007439 ORTHO05D009294 2.5e-32 144.8 213 39.4
Sp7g18380 Schrenkiella parvula HOM05D004848 ORTHO05D006859 4.2e-32 144.1 171 44.4
QL11p016354 Quercus lobata HOM05D002343 ORTHO05D004258 5.5e-32 143.7 666 66.8
HPP92_005782 Vanilla planifolia HOM05D007439 ORTHO05D009294 5.5e-32 143.7 204 40.7
VMungo1383G3026 Vigna mungo HOM05D007439 ORTHO05D009294 9.4e-32 142.9 653 67.5
A01p11750 Brassica napus HOM05D007439 ORTHO05D009294 1.2e-31 142.5 168 45.8
BraA01t01117Z Brassica rapa HOM05D007439 ORTHO05D009294 1.2e-31 142.5 168 45.8
Lj2C350T3 Lonicera japonica HOM05D007439 ORTHO05D009294 1.2e-31 142.5 193 44.0
Sabra15G0138100 Salix brachista HOM05D007439 ORTHO05D009294 1.6e-31 142.1 155 49.0
Cpa.g.sc135.9 Carica papaya HOM05D007439 ORTHO05D009294 2.1e-31 141.7 171 46.8
Medtr7g405940 Medicago truncatula HOM05D007439 ORTHO05D009294 2.1e-31 141.7 143 48.3
CSS0002129 Camellia sinensis var. sinensis HOM05D007439 ORTHO05D009294 4.7e-31 140.6 132 54.5
CAN.G149.50 Capsicum annuum HOM05D007439 ORTHO05D009294 8.0e-31 139.8 699 65.5
ATR0049G016 Amborella trichopoda HOM05D007439 ORTHO05D009294 1.0e-30 139.4 183 40.4
Migut.F01393 Erythranthe guttata HOM05D007439 ORTHO05D009294 1.0e-30 139.4 140 49.3
CANSAT80G1475 Cannabis sativa HOM05D007439 ORTHO05D009294 1.4e-30 139.0 653 64.0
Haze_06038 Corylus avellana HOM05D007439 ORTHO05D009294 1.4e-30 139.0 185 40.0
Sopen02g017990 Solanum pennellii HOM05D007439 ORTHO05D009294 1.4e-30 139.0 706 63.9
arahy.Tifrunner.gnm1.ann1.FQ7S35 Arachis hypogaea HOM05D002637 ORTHO05D008095 2.3e-30 138.3 146 50.0
THA.LOC104811547 Tarenaya hassleriana HOM05D007439 ORTHO05D009294 2.3e-30 138.3 172 45.3
BcaC09g51360 Brassica carinata HOM05D007439 ORTHO05D009294 5.2e-30 137.1 167 44.9
BcaNung01745 Brassica carinata HOM05D007439 ORTHO05D009294 5.2e-30 137.1 156 46.8
C01p13940 Brassica napus HOM05D007439 ORTHO05D009294 6.8e-30 136.7 167 44.9
BolC1t01361H Brassica oleracea HOM05D007439 ORTHO05D009294 6.8e-30 136.7 167 44.9
Solyc02g068890.3 Solanum lycopersicum HOM05D007439 ORTHO05D009294 6.8e-30 136.7 706 63.7
Thecc.06G142600 Theobroma cacao HOM05D007439 ORTHO05D009294 6.8e-30 136.7 168 45.2
Thecc.06G142800 Theobroma cacao HOM05D007439 ORTHO05D009294 6.8e-30 136.7 168 45.2
ClCG01G009470 Citrullus lanatus HOM05D007439 ORTHO05D009294 2.6e-29 134.8 168 45.2
Oeu060350.1 Olea europaea HOM05D007439 ORTHO05D009294 2.6e-29 134.8 184 42.9
Thecc.06G142300 Theobroma cacao HOM05D007439 ORTHO05D009294 4.4e-29 134.0 162 45.7
Eucgr.E01833 Eucalyptus grandis HOM05D007439 ORTHO05D009294 7.5e-29 133.3 95 66.3
AL7G34150 Arabidopsis lyrata HOM05D004848 ORTHO05D009294 9.8e-29 132.9 145 46.2
CANSAT80G1820 Cannabis sativa HOM05D007439 ORTHO05D009294 9.8e-29 132.9 95 65.3
PGSC0003DMG400010332 Solanum tuberosum HOM05D007439 ORTHO05D009294 1.7e-28 132.1 706 63.7
Aa31LG6G2350 Aethionema arabicum HOM05D004848 ORTHO05D006859 4.8e-28 130.6 169 42.0
AT4G19890 Arabidopsis thaliana HOM05D007439 ORTHO05D009294 6.3e-28 130.2 161 43.5
Medtr7g007400 Medicago truncatula HOM05D007439 ORTHO05D009294 6.3e-28 130.2 617 70.0
RcHm_v2.0_Chr5g0020081 Rosa chinensis HOM05D007439 ORTHO05D009294 8.3e-28 129.8 142 46.5
EL10Ac1g02315 Beta vulgaris HOM05D007439 ORTHO05D009294 1.8e-27 128.6 160 43.8
Nitab4.5_0001288g0070 Nicotiana tabacum HOM05D002343 ORTHO05D004258 2.4e-27 128.3 207 39.6
FvH4_3g12270 Fragaria vesca HOM05D007439 ORTHO05D009294 3.1e-27 127.9 181 41.4
FAN16G2455 Fragaria x ananassa HOM05D002343 ORTHO05D004258 3.1e-27 127.9 181 41.4
SEGI_11644 Sequoiadendron giganteum HOM05D007439 ORTHO05D009294 1.2e-26 125.9 227 33.0
Atru.chr10.530 Acer truncatum HOM05D007439 ORTHO05D009294 1.6e-26 125.6 153 45.1
Peaxi162Scf00149g00061 Petunia axillaris HOM05D007439 ORTHO05D009294 2.0e-26 125.2 128 49.2
Nitab4.5_0000029g0150 Nicotiana tabacum HOM05D007439 ORTHO05D009294 3.5e-26 124.4 204 39.7
Sc02g0008330 Simmondsia chinensis HOM05D007439 ORTHO05D009294 3.5e-26 124.4 192 42.2
Thhalv10027430m.g Eutrema salsugineum HOM05D007439 ORTHO05D009294 5.9e-26 123.6 129 48.1
MSTRG.16346 Avicennia marina HOM05D007439 ORTHO05D009294 1.3e-25 122.5 171 42.7
Carub.0007s2132 Capsella rubella HOM05D007439 ORTHO05D009294 1.3e-25 122.5 129 48.8
MBI03_g16306_MAGBIO Magnolia biondii HOM05D007439 ORTHO05D009294 1.3e-25 122.5 105 56.2
FAN21G0604 Fragaria x ananassa HOM05D002343 ORTHO05D004258 2.2e-25 121.7 116 50.9
CARHR226670 Cardamine hirsuta HOM05D007439 ORTHO05D009294 2.9e-25 121.3 103 53.4
Lsat_1_v5_gn_2_63940 Lactuca sativa HOM05D007439 ORTHO05D009294 3.8e-25 120.9 174 41.4
QL11p017775 Quercus lobata HOM05D000038 ORTHO05D000143 5.0e-25 120.6 96 62.5
SalBow6G0510 Salvia bowleyana HOM05D007439 ORTHO05D009294 1.5e-24 119.0 167 39.5
SHI24856 Sapria himalayana HOM05D007439 ORTHO05D009294 9.5e-24 116.3 158 38.6
Cc09_g06120 Coffea canephora HOM05D007439 ORTHO05D009294 3.6e-23 114.4 165 41.8
Zm00001eb167160 Zea mays HOM05D007439 ORTHO05D009294 3.6e-23 114.4 195 33.3
Os11g0607100 Oryza sativa ssp. japonica HOM05D007439 ORTHO05D009294 2.3e-22 111.7 167 34.1
COL.COLO4_30991 Corchorus olitorius HOM05D007439 ORTHO05D009294 3.0e-22 111.3 80 67.5
MD10G1232900 Malus domestica HOM05D007439 ORTHO05D009294 2.0e-21 108.6 73 72.6
CDE06G0761 Ceratophyllum demersum HOM05D000063 ORTHO05D002147 3.4e-21 107.8 138 39.9
SEGI_34940 Sequoiadendron giganteum HOM05D007439 ORTHO05D009294 4.4e-21 107.5 194 33.0
BcaB06g28505 Brassica carinata HOM05D007439 ORTHO05D009294 7.0e-19 100.1 96 55.2
BolC4t27551H Brassica oleracea HOM05D007439 ORTHO05D009294 7.0e-19 100.1 96 55.2
Eucgr.E01806 Eucalyptus grandis HOM05D007439 ORTHO05D009294 1.3e-17 95.9 104 36.5
Nitab4.5_0013428g0020 Nicotiana tabacum HOM05D007439 ORTHO05D009294 1.3e-17 95.9 76 61.8
RcHm_v2.0_Chr7g0211421 Rosa chinensis HOM05D007439 ORTHO05D009294 2.3e-17 95.1 99 48.5
Haze_06045 Corylus avellana HOM05D001622 ORTHO05D009294 9.5e-16 89.7 81 55.6
C04p60520 Brassica napus HOM05D007439 ORTHO05D009294 7.5e-13 80.1 96 49.0
Eucgr.E01791 Eucalyptus grandis HOM05D007439 ORTHO05D009294 9.2e-11 73.2 57 61.4
VMungo1309G1576 Vigna mungo HOM05D000104 ORTHO05D009920 8.6e-09 66.6 192 27.1
Glyma.01G016100 Glycine max HOM05D007893 ORTHO05D010042 2.5e-08 65.1 139 27.3
Phvul.002G138600 Phaseolus vulgaris HOM05D007893 ORTHO05D010042 4.3e-08 64.3 129 27.1
Phvul.009G206300 Phaseolus vulgaris HOM05D000104 ORTHO05D009920 5.6e-08 63.9 224 24.6
Phvul.011G168600 Phaseolus vulgaris HOM05D007208 ORTHO05D009090 2.1e-07 62.0 217 24.9
GSVIVG01036918001 Vitis vinifera HOM05D007551 ORTHO05D009424 2.8e-07 61.6 203 25.1
Glyma.12G191600 Glycine max HOM05D000104 ORTHO05D009920 4.7e-07 60.8 226 25.2
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 6.2e-07 60.5 130 26.2
Glyma.01G073500 Glycine max HOM05D000104 ORTHO05D009920 8.0e-07 60.1 78 35.9
VMungo1215G2510 Vigna mungo HOM05D007893 ORTHO05D010042 8.0e-07 60.1 129 25.6
Zm00001eb298940 Zea mays HOM05D001779 ORTHO05D001753 8.0e-07 60.1 152 26.3
Nitab4.5_0000256g0090 Nicotiana tabacum HOM05D007893 ORTHO05D010042 1.0e-06 59.7 115 27.8
Os07g0300200 Oryza sativa ssp. japonica HOM05D005764 ORTHO05D006600 1.8e-06 58.9 90 33.3
Medtr7g044790 Medicago truncatula HOM05D000104 ORTHO05D009920 2.3e-06 58.5 209 24.4
Potri.014G056400 Populus trichocarpa HOM05D000104 ORTHO05D009920 2.3e-06 58.5 192 25.5
MSTRG.23210 Avicennia marina HOM05D007893 ORTHO05D010042 4.0e-06 57.8 134 25.4
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 4.0e-06 57.8 129 25.6
Psat3g158640 Pisum sativum HOM05D000104 ORTHO05D009920 4.0e-06 57.8 78 38.5
SGA_v2.0_scaffold25G10745 Striga asiatica HOM05D007893 ORTHO05D010042 4.0e-06 57.8 122 26.2
BraA10t44884Z Brassica rapa HOM05D007202 ORTHO05D009125 5.2e-06 57.4 243 25.5
COL.COLO4_22110 Corchorus olitorius HOM05D000891 ORTHO05D000761 5.2e-06 57.4 182 26.9
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 5.2e-06 57.4 132 27.3
Nitab4.5_0000026g0050 Nicotiana tabacum HOM05D002453 ORTHO05D002107 5.2e-06 57.4 124 29.0
Nitab4.5_0002310g0060 Nicotiana tabacum HOM05D007893 ORTHO05D010042 5.2e-06 57.4 115 26.1
Sopen12g014610 Solanum pennellii HOM05D002453 ORTHO05D002107 5.2e-06 57.4 124 27.4
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 6.8e-06 57.0 142 26.1
Ca_23477_v3 Cicer arietinum L. HOM05D000104 ORTHO05D009920 6.8e-06 57.0 78 35.9
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 6.8e-06 57.0 122 31.1
Gohir.A03G191600 Gossypium hirsutum HOM05D006858 ORTHO05D008767 6.8e-06 57.0 85 40.0
Manes.08G089400 Manihot esculenta HOM05D000104 ORTHO05D009920 6.8e-06 57.0 78 35.9
Nitab4.5_0005983g0010 Nicotiana tabacum HOM05D002453 ORTHO05D002107 6.8e-06 57.0 124 29.0
PGR142G1382 Punica granatum HOM05D000001 ORTHO05D000003 8.9e-06 56.6 134 23.9


User provided reference genes

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