Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 8.7e-58 226.9 123 100.0
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 7.8e-51 203.8 114 92.1
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 7.8e-51 203.8 114 92.1
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 1.0e-50 203.4 115 92.2
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 3.9e-50 201.4 114 91.2
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 3.9e-50 201.4 114 91.2
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 3.9e-50 201.4 114 91.2
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 5.1e-50 201.1 119 88.2
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 5.1e-50 201.1 116 91.4
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 8.7e-50 200.3 115 91.3
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 8.7e-50 200.3 114 90.4
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 1.1e-49 199.9 114 91.2
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 1.1e-49 199.9 115 90.4
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 1.1e-49 199.9 113 90.3
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 1.5e-49 199.5 116 89.7
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.5e-49 199.5 115 90.4
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 1.5e-49 199.5 113 91.2
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 1.9e-49 199.1 116 89.7
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 1.9e-49 199.1 116 89.7
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 1.9e-49 199.1 116 89.7
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 2.5e-49 198.7 114 90.4
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 3.3e-49 198.4 115 88.7
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 3.3e-49 198.4 114 89.5
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 3.3e-49 198.4 114 89.5
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 3.3e-49 198.4 113 90.3
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 4.3e-49 198.0 116 88.8
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 9.6e-49 196.8 116 89.7
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 1.3e-48 196.4 120 83.3
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 1.6e-48 196.1 115 87.8
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 1.6e-48 196.1 114 90.4
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.6e-48 196.1 118 88.1
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.6e-48 196.1 118 88.1
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.6e-48 196.1 116 87.1
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 1.6e-48 196.1 114 87.7
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 1.6e-48 196.1 120 84.2
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 1.6e-48 196.1 114 89.5
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 2.1e-48 195.7 114 87.7
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 2.1e-48 195.7 112 87.5
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 2.1e-48 195.7 114 89.5
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 2.8e-48 195.3 123 85.4
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 2.8e-48 195.3 123 85.4
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 2.8e-48 195.3 123 85.4
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 3.6e-48 194.9 109 91.7
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 4.8e-48 194.5 113 88.5
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 4.8e-48 194.5 118 87.3
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 4.8e-48 194.5 123 86.2
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 6.2e-48 194.1 115 89.6
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 6.2e-48 194.1 120 85.8
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 6.2e-48 194.1 120 85.8
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 6.2e-48 194.1 115 89.6
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 8.1e-48 193.7 118 88.1
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 8.1e-48 193.7 113 88.5
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 8.1e-48 193.7 115 87.8
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 1.1e-47 193.4 113 88.5
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 1.4e-47 193.0 113 87.6
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 1.4e-47 193.0 113 87.6
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 1.4e-47 193.0 116 87.9
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 1.4e-47 193.0 113 87.6
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 1.4e-47 193.0 113 88.5
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 1.8e-47 192.6 113 87.6
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 1.8e-47 192.6 117 88.0
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 1.8e-47 192.6 111 88.3
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 2.4e-47 192.2 113 88.5
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 2.4e-47 192.2 113 87.6
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 2.4e-47 192.2 113 88.5
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 2.4e-47 192.2 113 87.6
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 3.1e-47 191.8 113 86.7
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 3.1e-47 191.8 122 85.2
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 3.1e-47 191.8 113 87.6
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 3.1e-47 191.8 113 89.4
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 4.0e-47 191.4 113 87.6
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 4.0e-47 191.4 113 87.6
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 4.0e-47 191.4 113 87.6
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 5.3e-47 191.0 113 88.5
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 5.3e-47 191.0 113 86.7
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 5.3e-47 191.0 113 86.7
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 5.3e-47 191.0 113 86.7
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 6.9e-47 190.7 113 86.7
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 6.9e-47 190.7 113 86.7
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 6.9e-47 190.7 114 86.8
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 9.0e-47 190.3 111 89.2
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 9.0e-47 190.3 116 84.5
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 9.0e-47 190.3 116 84.5
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 1.2e-46 189.9 113 85.8
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 1.2e-46 189.9 113 85.8
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 1.2e-46 189.9 115 85.2
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.2e-46 189.9 115 87.0
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.2e-46 189.9 115 87.0
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 1.2e-46 189.9 115 87.0
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 1.2e-46 189.9 113 85.8
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 1.2e-46 189.9 113 85.8
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 1.2e-46 189.9 113 85.8
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 1.5e-46 189.5 114 85.1
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 1.5e-46 189.5 120 83.3
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 1.5e-46 189.5 113 87.6
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 2.0e-46 189.1 113 87.6
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 2.0e-46 189.1 113 85.8
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 2.0e-46 189.1 111 88.3
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 2.6e-46 188.7 113 85.8
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 3.4e-46 188.3 115 86.1
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 3.4e-46 188.3 116 81.9
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 4.5e-46 188.0 113 85.8
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 4.5e-46 188.0 113 84.1
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 4.5e-46 188.0 113 85.8
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 4.5e-46 188.0 111 88.3
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 5.8e-46 187.6 109 89.0
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 5.8e-46 187.6 125 82.4
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 7.6e-46 187.2 113 85.8
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 9.9e-46 186.8 114 85.1
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 1.3e-45 186.4 113 85.8
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 1.7e-45 186.0 113 85.0
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 2.2e-45 185.7 107 89.7
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 2.2e-45 185.7 115 80.9
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 2.2e-45 185.7 115 82.6
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 2.9e-45 185.3 115 83.5
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 8.4e-45 183.7 114 84.2
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 8.4e-45 183.7 115 81.7
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 1.9e-44 182.6 114 82.5
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 9.3e-44 180.3 112 79.5
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 9.3e-44 180.3 113 83.2
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 9.3e-44 180.3 109 81.7
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 2.1e-43 179.1 105 87.6
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 3.5e-43 178.3 151 68.9
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 3.5e-43 178.3 125 79.2
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 3.5e-43 178.3 113 83.2
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 4.6e-43 177.9 113 82.3
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 3.0e-42 175.3 109 83.5
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 6.7e-42 174.1 114 72.8
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 1.1e-41 173.3 122 77.0
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.5e-38 162.9 175 58.3
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 3.4e-38 161.8 108 75.0
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 3.4e-38 161.8 89 88.8
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 2.9e-37 158.7 88 89.8
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 3.2e-36 155.2 119 76.5
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 7.1e-36 154.1 197 49.7
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 4.3e-33 144.8 81 88.9
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 1.6e-32 142.9 85 88.2
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 4.8e-32 141.4 72 93.1
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 1.1e-31 140.2 73 95.9
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 1.8e-31 139.4 85 84.7
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 5.3e-31 137.9 86 83.7
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 4.5e-30 134.8 85 80.0
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 1.7e-29 132.9 99 72.7
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 2.9e-29 132.1 86 76.7
Psat2g139040 Pisum sativum HOM05D004396 ORTHO05D005272 2.9e-29 132.1 67 97.0
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 8.4e-29 130.6 82 82.9
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 1.4e-28 129.8 105 68.6
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 1.4e-28 129.8 105 68.6
CBR_g15971 Chara braunii HOM05D004396 ORTHO05D005272 3.0e-26 122.1 109 57.8
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 1.5e-25 119.8 97 56.7
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 3.1e-23 112.1 75 81.3
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 5.3e-23 111.3 80 75.0
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 2.0e-22 109.4 70 82.9
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 4.5e-22 108.2 75 78.7
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 5.5e-20 101.3 83 67.5
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 7.9e-19 97.4 76 65.8
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 1.4e-18 96.7 104 59.6
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 1.8e-15 86.3 51 84.3
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 3.7e-08 62.0 48 66.7
RcHm_v2.0_Chr6g0251331 Rosa chinensis HOM05D004396 ORTHO05D005272 1.8e-07 59.7 63 61.9
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 5.3e-07 58.2 47 66.0
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 5.3e-07 58.2 41 73.2
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 5.3e-07 58.2 41 73.2
RcHm_v2.0_Chr6g0251311 Rosa chinensis HOM05D004396 ORTHO05D005272 9.1e-07 57.4 46 73.9
TPR.G36203 Trifolium pratense HOM05D004396 ORTHO05D005272 3.4e-06 55.5 47 70.2


User provided reference genes

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