Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 9.3e-139 496.9 256 100.0
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 8.3e-87 324.3 201 81.1
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 9.2e-86 320.9 209 77.0
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 2.9e-84 315.8 192 80.2
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 2.9e-84 315.8 203 76.8
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 2.9e-84 315.8 199 77.4
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 8.6e-84 314.3 199 77.9
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 8.6e-84 314.3 210 76.2
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 1.5e-83 313.5 196 79.1
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 2.5e-83 312.8 198 77.3
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 9.5e-83 310.8 210 75.2
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 9.5e-83 310.8 197 75.6
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.2e-82 310.5 198 78.8
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 2.8e-82 309.3 199 77.4
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 4.7e-82 308.5 210 75.7
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 8.0e-82 307.8 205 76.6
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 8.0e-82 307.8 210 75.7
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.0e-81 307.4 186 79.6
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 1.4e-81 307.0 205 76.1
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 1.4e-81 307.0 196 77.6
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 1.8e-81 306.6 198 77.3
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 4.0e-81 305.4 199 77.4
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 5.2e-81 305.1 201 77.1
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 5.2e-81 305.1 208 74.0
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 5.2e-81 305.1 193 77.2
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 5.2e-81 305.1 210 75.7
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 8.9e-81 304.3 186 79.0
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 8.9e-81 304.3 229 68.1
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 1.5e-80 303.5 182 78.0
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 2.0e-80 303.1 204 75.5
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 2.0e-80 303.1 207 74.4
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 2.6e-80 302.8 210 75.2
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 3.4e-80 302.4 185 77.8
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 3.4e-80 302.4 205 72.7
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 4.4e-80 302.0 204 76.5
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 4.4e-80 302.0 204 76.5
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 4.4e-80 302.0 193 75.1
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.3e-79 300.4 186 78.0
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 1.3e-79 300.4 199 74.9
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.7e-79 300.1 200 76.5
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.7e-79 300.1 200 76.5
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 3.7e-79 298.9 199 74.9
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 3.7e-79 298.9 179 82.1
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 4.9e-79 298.5 205 73.2
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 8.3e-79 297.7 200 76.5
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.4e-78 297.0 187 76.5
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 1.4e-78 297.0 202 76.2
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 1.9e-78 296.6 209 72.7
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.9e-78 296.6 186 76.9
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 1.9e-78 296.6 201 74.6
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.9e-78 296.6 199 76.4
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 3.2e-78 295.8 213 71.4
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 3.2e-78 295.8 200 75.5
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 5.4e-78 295.0 189 75.7
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 5.4e-78 295.0 195 74.9
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 1.2e-77 293.9 189 75.1
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 1.2e-77 293.9 194 77.3
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.6e-77 293.5 199 73.4
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 1.6e-77 293.5 196 75.5
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 2.0e-77 293.1 198 74.7
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 3.5e-77 292.4 203 70.9
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 4.6e-77 292.0 195 74.9
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 4.6e-77 292.0 193 74.6
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 1.0e-76 290.8 201 76.1
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 5.0e-76 288.5 199 73.4
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 8.6e-76 287.7 195 74.4
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 8.6e-76 287.7 202 71.8
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 1.1e-75 287.3 198 73.2
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 1.1e-75 287.3 205 71.2
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 1.9e-75 286.6 200 72.0
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.9e-75 286.6 188 73.4
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 2.5e-75 286.2 203 70.9
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.5e-75 286.2 199 72.9
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 3.3e-75 285.8 210 71.4
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 7.3e-75 284.6 199 71.9
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 9.5e-75 284.3 204 71.1
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 1.2e-74 283.9 198 72.7
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 2.1e-74 283.1 195 72.8
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 2.1e-74 283.1 199 71.9
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.1e-74 283.1 218 67.0
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 2.8e-74 282.7 198 73.2
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 4.7e-74 282.0 213 71.4
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 6.2e-74 281.6 198 70.7
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 8.0e-74 281.2 203 71.4
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.1e-73 280.8 199 71.9
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.8e-73 280.0 192 74.5
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 5.2e-73 278.5 285 55.8
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 8.9e-73 277.7 194 71.1
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 2.0e-72 276.6 155 84.5
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 5.8e-72 275.0 160 83.1
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 7.5e-72 274.6 194 71.6
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 1.3e-71 273.9 197 72.1
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 1.3e-71 273.9 187 73.8
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.2e-71 273.1 191 71.2
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 2.2e-71 273.1 195 70.8
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 2.2e-71 273.1 195 70.8
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 2.9e-71 272.7 192 71.4
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 2.9e-71 272.7 205 70.7
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 2.9e-71 272.7 193 70.5
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 8.3e-71 271.2 198 70.7
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 2.4e-70 269.6 195 69.7
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 2.4e-70 269.6 205 68.3
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 3.2e-70 269.2 199 69.3
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 5.4e-70 268.5 192 71.4
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 3.5e-69 265.8 199 70.4
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 6.0e-69 265.0 200 68.0
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 7.8e-69 264.6 199 69.3
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 2.3e-68 263.1 201 67.7
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 3.0e-68 262.7 196 67.3
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 5.1e-68 261.9 201 67.2
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 6.6e-68 261.5 207 68.1
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 1.1e-67 260.8 203 66.5
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 1.5e-67 260.4 170 75.3
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 1.6e-66 256.9 160 80.6
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 3.6e-66 255.8 197 67.0
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 8.9e-65 251.1 205 64.4
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 5.8e-64 248.4 200 65.0
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 3.7e-63 245.7 205 62.9
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 4.9e-63 245.4 157 73.2
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.9e-62 243.4 169 71.0
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 2.7e-61 239.6 193 65.8
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 8.6e-60 234.6 158 73.4
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 9.9e-56 221.1 190 60.5
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 3.8e-55 219.2 121 90.1
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 1.6e-53 213.8 199 60.8
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 1.0e-52 211.1 122 83.6
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 2.8e-50 203.0 170 60.6
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 4.0e-49 199.1 127 74.8
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 2.6e-48 196.4 190 54.7
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 3.8e-47 192.6 120 76.7
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 4.9e-47 192.2 151 66.2
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 1.1e-46 191.0 193 56.0
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 5.4e-46 188.7 155 61.9
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 3.0e-44 183.0 194 53.6
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 4.8e-42 175.6 103 84.5
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 4.8e-42 175.6 110 82.7
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.1e-41 174.5 162 56.2
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 4.5e-40 169.1 96 81.2
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 8.4e-39 164.9 101 81.2
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 3.5e-37 159.5 172 48.8
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 6.0e-37 158.7 154 53.9
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.3e-34 151.0 172 50.0
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 4.8e-34 149.1 122 63.9
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 1.1e-19 101.3 98 57.1
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 1.5e-19 100.9 75 62.7
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 1.5e-19 100.9 78 57.7
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 7.4e-19 98.6 179 36.9
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.7e-18 96.3 204 34.8
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 1.1e-17 94.7 70 62.9
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 4.1e-17 92.8 67 64.2
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 1.4e-14 84.3 208 32.7
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 6.7e-12 75.5 80 47.5
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 8.8e-12 75.1 47 76.6
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 1.5e-11 74.3 53 73.6
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 2.8e-10 70.1 40 87.5
CSS0035454 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D015543 4.5e-08 62.8 63 50.8


User provided reference genes

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