Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 0.0e+00 1201.8 632 100.0
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 9.4e-249 863.6 627 72.1
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 5.0e-226 788.1 627 65.7
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 7.0e-220 767.7 631 63.7
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 1.0e-218 763.8 630 63.2
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 6.8e-215 751.1 632 63.3
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 1.1e-212 743.8 627 62.8
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 1.0e-210 737.3 627 61.7
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 3.8e-210 735.3 627 62.8
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 6.6e-210 734.6 625 61.9
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 3.3e-209 732.3 628 61.9
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 1.6e-208 729.9 626 61.7
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 3.0e-207 725.7 631 61.3
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 5.2e-207 724.9 627 61.4
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 5.2e-207 724.9 628 60.7
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 9.8e-206 720.7 627 59.2
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 3.7e-205 718.8 627 61.4
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 3.7e-205 718.8 628 60.2
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.4e-204 716.8 627 59.6
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 1.8e-204 716.5 627 59.8
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.2e-203 713.8 627 59.6
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.5e-201 706.1 627 58.9
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 2.5e-201 706.1 628 58.0
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 4.3e-201 705.3 626 60.2
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 1.6e-200 703.4 628 58.8
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 4.7e-200 701.8 625 57.0
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 1.4e-199 700.3 627 59.0
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 4.4e-198 695.3 627 58.9
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 1.9e-196 689.9 625 56.6
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 5.4e-196 688.3 626 57.8
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 7.0e-196 688.0 632 57.3
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 3.5e-195 685.6 627 56.9
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 3.5e-195 685.6 569 62.2
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 2.5e-193 679.5 657 57.5
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 3.6e-192 675.6 657 55.6
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 1.1e-191 674.1 627 57.6
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 1.4e-191 673.7 627 57.4
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 1.8e-191 673.3 623 58.1
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 2.3e-191 672.9 627 56.1
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 5.2e-191 671.8 625 56.0
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 5.2e-191 671.8 626 57.5
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 2.0e-190 669.8 624 58.3
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 2.0e-190 669.8 641 56.9
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 2.6e-190 669.5 626 56.9
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 2.6e-190 669.5 621 57.2
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 3.4e-190 669.1 622 57.9
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 7.5e-190 667.9 621 58.6
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 1.3e-189 667.2 622 58.0
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 6.4e-189 664.8 624 58.0
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 6.4e-189 664.8 622 57.7
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 6.4e-189 664.8 624 58.0
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 1.1e-188 664.1 620 56.3
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 2.4e-188 662.9 627 56.8
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 1.2e-187 660.6 626 55.6
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 1.2e-187 660.6 668 53.9
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 1.6e-187 660.2 622 57.6
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 1.6e-187 660.2 586 60.1
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 4.6e-187 658.7 621 58.3
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 4.6e-187 658.7 624 56.2
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 6.0e-187 658.3 627 56.9
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 7.8e-187 657.9 621 56.7
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 6.6e-186 654.8 623 55.7
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 2.5e-185 652.9 643 55.2
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 1.2e-184 650.6 625 53.9
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 4.4e-182 642.1 629 55.3
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 1.7e-181 640.2 621 57.3
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 2.1e-179 633.3 630 54.8
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 6.0e-179 631.7 520 62.1
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 1.7e-178 630.2 568 59.7
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 1.7e-178 630.2 627 53.6
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 5.1e-178 628.6 513 64.7
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 6.6e-178 628.2 513 64.7
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 8.6e-178 627.9 625 54.2
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 4.7e-176 622.1 568 59.3
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 6.2e-176 621.7 661 52.0
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 4.0e-175 619.0 623 54.7
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 7.6e-174 614.8 569 58.2
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 5.4e-172 608.6 579 56.0
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 3.5e-171 605.9 619 52.2
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 3.5e-171 605.9 593 55.1
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 1.0e-170 604.4 622 51.3
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 5.3e-167 592.0 533 58.7
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 1.7e-165 587.0 534 58.6
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 2.4e-164 583.2 623 51.0
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 4.2e-164 582.4 627 53.1
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 1.0e-162 577.8 469 65.7
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 1.5e-158 563.9 535 56.6
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 3.4e-158 562.8 627 49.9
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 5.8e-158 562.0 557 53.7
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 2.2e-157 560.1 512 57.6
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 1.1e-153 547.7 622 50.2
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 3.7e-152 542.7 655 47.6
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 1.2e-150 537.7 443 64.3
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 3.3e-145 519.6 464 60.8
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 1.1e-143 514.6 597 50.6
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 4.5e-134 482.6 630 46.8
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 4.7e-123 446.0 397 59.4
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 2.6e-118 430.3 475 52.0
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 2.2e-117 427.2 366 60.4
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 1.1e-116 424.9 588 45.1
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 6.4e-88 329.3 631 32.8
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 1.6e-86 324.7 637 33.6
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 6.0e-86 322.8 382 50.3
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 1.1e-84 318.5 628 36.3
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 1.7e-77 294.7 522 39.3
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 1.7e-77 294.7 522 39.3
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 2.9e-72 277.3 379 45.1
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 2.3e-69 267.7 508 34.3
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 5.1e-69 266.5 623 30.7
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 5.8e-65 253.1 379 43.5
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.9e-60 238.0 262 47.7
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 4.9e-48 196.8 257 44.0
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 4.2e-47 193.7 257 43.6
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 1.6e-46 191.8 177 55.4
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 5.3e-42 176.8 382 30.6
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 5.8e-41 173.3 141 61.0
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 1.9e-39 168.3 130 69.2
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 2.5e-39 167.9 220 46.4
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 2.1e-35 154.8 142 56.3
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 1.4e-31 142.1 158 51.3
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 7.1e-31 139.8 166 46.4
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 7.1e-31 139.8 152 46.1
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 4.6e-30 137.1 176 47.2
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 3.9e-29 134.0 169 42.0
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 4.8e-27 127.1 401 30.2
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.2e-25 122.5 360 30.3
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 5.0e-24 117.1 137 49.6
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 1.2e-22 112.5 214 41.6
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 2.0e-20 105.1 329 27.7
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.4e-18 99.0 144 38.2
Eucgr.L02780 Eucalyptus grandis HOM05D004744 ORTHO05D005655 4.5e-17 94.0 59 74.6
SHI18506 Sapria himalayana HOM05D004744 ORTHO05D005655 7.7e-17 93.2 59 71.2
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 2.2e-16 91.7 81 59.3
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 5.0e-16 90.5 120 40.8
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 7.2e-15 86.7 87 47.1
SHI18507 Sapria himalayana HOM05D004744 ORTHO05D005655 4.4e-12 77.4 73 57.5
Dinv18155 Davidia involucrata HOM05D004744 ORTHO05D005655 1.7e-11 75.5 42 83.3
C08p02720 Brassica napus HOM05D004744 ORTHO05D005655 3.5e-09 67.8 71 52.1
SEGI_08303 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 7.7e-09 66.6 65 52.3
CsaV3_4G016180 Cucumis sativus L. HOM05D004744 ORTHO05D005655 3.8e-08 64.3 46 63.0
Rhsim01G0220500 Rhododendron simsii HOM05D004744 ORTHO05D005655 1.1e-07 62.8 50 62.0
Cre07.g323650 Chlamydomonas reinhardtii HOM05D004744 ORTHO05D005655 1.9e-07 62.0 117 31.6
SEGI_21256 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.9e-07 62.0 82 42.7
CsaV3_5G015120 Cucumis sativus L. HOM05D004744 ORTHO05D005655 7.2e-07 60.1 41 73.2
MELO3C032098.2 Cucumis melo HOM05D004744 ORTHO05D005655 1.2e-06 59.3 42 59.5
unitig_748.g7861 Utricularia gibba HOM05D004744 ORTHO05D005655 2.7e-06 58.2 72 44.4


User provided reference genes

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