Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 0.0e+00 2386.3 1203 100.0
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1958.0 1206 81.7
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 0.0e+00 1947.2 1205 81.5
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 0.0e+00 1939.9 1211 80.3
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1890.5 1206 79.5
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 0.0e+00 1881.3 1206 79.1
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 0.0e+00 1880.9 1206 78.9
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 0.0e+00 1880.1 1203 78.9
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 0.0e+00 1879.8 1206 78.9
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1875.9 1208 78.6
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 0.0e+00 1874.8 1206 78.6
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 0.0e+00 1857.0 1209 78.9
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 0.0e+00 1854.7 1204 77.8
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 0.0e+00 1853.6 1205 78.0
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 0.0e+00 1838.2 1296 72.9
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 0.0e+00 1830.1 1206 76.9
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 0.0e+00 1817.7 1205 76.6
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1817.0 1205 76.4
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 0.0e+00 1816.6 1291 73.2
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1815.8 1206 76.6
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1814.3 1205 76.3
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1810.4 1290 72.5
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1810.4 1290 72.5
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 0.0e+00 1809.7 1212 76.1
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 0.0e+00 1809.3 1206 75.8
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1806.2 1206 76.2
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 0.0e+00 1804.3 1207 75.6
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 0.0e+00 1803.9 1206 75.7
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 0.0e+00 1798.1 1208 74.7
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 0.0e+00 1797.7 1206 75.8
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1795.8 1222 74.8
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 0.0e+00 1793.5 1205 74.4
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1791.5 1222 74.8
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 0.0e+00 1791.2 1215 74.3
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 0.0e+00 1788.9 1206 75.4
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1787.7 1204 75.6
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 0.0e+00 1785.8 1203 75.3
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1782.7 1222 74.5
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1782.7 1204 75.3
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1781.9 1206 75.6
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 0.0e+00 1780.4 1206 75.2
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1780.0 1206 75.3
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1779.6 1203 75.1
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1779.6 1202 75.0
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 0.0e+00 1778.8 1203 75.0
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1778.8 1219 74.5
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 0.0e+00 1778.8 1205 75.1
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 0.0e+00 1778.1 1205 74.9
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 0.0e+00 1777.7 1205 74.9
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1776.1 1203 74.1
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1775.0 1204 74.6
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 0.0e+00 1774.6 1204 74.9
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 0.0e+00 1773.8 1206 75.0
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 0.0e+00 1771.1 1208 74.7
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 0.0e+00 1768.8 1204 74.5
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 0.0e+00 1768.8 1201 74.4
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1768.4 1208 74.8
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 0.0e+00 1766.1 1201 74.6
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1766.1 1204 74.6
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 0.0e+00 1764.2 1201 74.4
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 0.0e+00 1763.8 1207 74.2
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 0.0e+00 1762.3 1206 73.5
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 0.0e+00 1760.7 1201 74.6
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 0.0e+00 1756.5 1205 74.3
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 0.0e+00 1752.6 1206 74.0
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1746.5 1203 73.1
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 0.0e+00 1746.5 1347 69.0
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 0.0e+00 1745.3 1207 74.1
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 0.0e+00 1744.2 1133 78.6
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1739.9 1203 73.3
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 0.0e+00 1738.0 1205 72.9
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1731.8 1201 73.9
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1727.6 1201 72.9
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 0.0e+00 1726.1 1207 73.2
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 0.0e+00 1725.7 1204 73.8
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1723.8 1234 72.3
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 0.0e+00 1723.0 1206 73.3
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1708.7 1206 73.2
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 0.0e+00 1704.9 1214 71.6
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1696.0 1206 71.9
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 0.0e+00 1669.8 1208 71.7
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1668.3 1199 70.5
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 0.0e+00 1666.7 1103 78.0
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 0.0e+00 1665.6 1203 72.2
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 0.0e+00 1619.8 1221 69.6
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 0.0e+00 1600.1 1207 67.4
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 0.0e+00 1593.9 1023 80.1
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 0.0e+00 1568.1 1210 66.4
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1565.8 1207 66.8
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 0.0e+00 1549.6 1041 76.1
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1544.3 1202 66.7
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1540.4 1048 74.6
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1536.5 1048 74.3
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1530.4 1012 77.1
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 0.0e+00 1471.4 984 76.9
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1469.1 985 76.2
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 0.0e+00 1451.4 997 74.0
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1381.3 1068 66.0
Hma1.2p1_0167F.1_g073640 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 0.0e+00 1370.1 902 78.0
Hund04463 Selenicereus undatus HOM05D004589 ORTHO05D005848 0.0e+00 1337.4 942 73.8
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 0.0e+00 1334.3 1223 58.0
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1300.4 829 79.1
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 0.0e+00 1252.3 1232 54.4
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 0.0e+00 1217.6 868 70.4
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 0.0e+00 1215.3 903 69.0
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 0.0e+00 1104.0 1229 50.3
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 0.0e+00 1103.2 1229 50.3
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 6.5e-275 951.4 1384 41.5
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 5.5e-274 948.3 1201 43.6
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.7e-251 873.6 1243 42.6
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 8.6e-243 844.7 519 83.0
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.2e-231 807.7 1151 42.9
TPR.G40835 Trifolium pratense HOM05D004589 ORTHO05D005848 4.9e-190 669.5 424 80.7
HPP92_024788 Vanilla planifolia HOM05D004589 ORTHO05D005848 8.0e-156 555.8 754 44.0
arahy.Tifrunner.gnm1.ann1.X695T9 Arachis hypogaea HOM05D004589 ORTHO05D005848 2.3e-147 527.7 486 60.1
TPR.G38909 Trifolium pratense HOM05D004589 ORTHO05D005848 2.0e-146 524.6 435 62.5
Cpa.g.sc187.29 Carica papaya HOM05D004589 ORTHO05D005848 2.2e-142 511.1 309 79.3
TPR.G38939 Trifolium pratense HOM05D004589 ORTHO05D005848 7.5e-138 496.1 324 75.3
SEGI_04045 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 2.9e-134 484.2 323 72.1
Gohir.D07G034250 Gossypium hirsutum HOM05D004589 ORTHO05D005848 2.8e-132 477.6 351 70.1
Hma1.2p1_0167F.1_g073630 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 1.4e-115 422.2 297 72.4
arahy.Tifrunner.gnm1.ann1.3DY4JU Arachis hypogaea HOM05D004589 ORTHO05D005848 4.9e-113 413.7 329 66.6
unitig_32.g11113 Utricularia gibba HOM05D004589 ORTHO05D005848 4.0e-107 394.0 316 64.9
SEGI_21363 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 8.9e-107 392.9 361 57.3
HPP92_024789 Vanilla planifolia HOM05D004589 ORTHO05D005848 2.0e-90 338.6 256 69.5
AagrBONN_evm.TU.Sc2ySwM_368.2737 Anthoceros agrestis HOM05D004589 ORTHO05D005848 1.6e-87 328.9 299 55.2
Medtr7g069440 Medicago truncatula HOM05D004589 ORTHO05D005848 4.8e-84 317.4 388 48.5
TAR383G0934 Trochodendron aralioides HOM05D004589 ORTHO05D005848 4.3e-69 267.7 166 79.5
Zm00001eb426010 Zea mays HOM05D004589 ORTHO05D005848 5.3e-67 260.8 272 55.1
Zm00001eb426000 Zea mays HOM05D004589 ORTHO05D005848 8.8e-54 216.9 141 78.0
CSS0039966 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 3.8e-49 201.4 209 56.0
Cpa.g.sc187.28 Carica papaya HOM05D004589 ORTHO05D005848 3.8e-49 201.4 117 80.3
arahy.Tifrunner.gnm1.ann1.6TA6W9 Arachis hypogaea HOM05D004589 ORTHO05D005848 9.4e-48 196.8 166 58.4
HPP92_024790 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.3e-44 186.4 138 63.0
Cre07.g316100 Chlamydomonas reinhardtii HOM05D004589 ORTHO05D005848 9.1e-43 180.3 727 26.0
HPP92_020311 Vanilla planifolia HOM05D004589 ORTHO05D005848 8.5e-41 173.7 196 52.6
MD08G1153900 Malus domestica HOM05D004589 ORTHO05D005848 1.9e-40 172.6 113 72.6
SMO361G0808 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 8.0e-39 167.2 292 39.7
TWI34G0107 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 5.2e-38 164.5 164 56.1
Nn2g16054 Nelumbo nucifera HOM05D004589 ORTHO05D005848 1.6e-34 152.9 86 90.7
arahy.Tifrunner.gnm1.ann1.6PY749 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.2e-29 136.7 166 44.6
SEGI_40067 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 1.7e-20 106.3 71 66.2
Atru.chr7.2501 Acer truncatum HOM05D004589 ORTHO05D005848 2.0e-18 99.4 59 78.0
Sp3g28070 Schrenkiella parvula HOM05D004589 ORTHO05D005848 3.6e-15 88.6 62 69.4
SMO164G0067 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.0e-14 87.0 237 29.5
RcHm_v2.0_Chr2g0096161 Rosa chinensis HOM05D004589 ORTHO05D005848 3.4e-13 82.0 47 76.6
C02p04820 Brassica napus HOM05D004589 ORTHO05D023960 5.4e-11 74.7 70 65.7
BolC2t06439H Brassica oleracea HOM05D004589 ORTHO05D023960 5.4e-11 74.7 70 65.7
A02p00800 Brassica napus HOM05D004589 ORTHO05D023960 7.0e-11 74.3 60 68.3
Sabra19G0134500 Salix brachista HOM05D001978 ORTHO05D000005 7.0e-11 74.3 70 57.1
Nn4g24965 Nelumbo nucifera HOM05D004589 ORTHO05D005848 2.9e-09 68.9 54 68.5
GSVIVG01037947001 Vitis vinifera HOM05D004589 ORTHO05D005848 6.6e-09 67.8 38 78.9
arahy.Tifrunner.gnm1.ann1.E2IMN8 Arachis hypogaea HOM05D004589 ORTHO05D005848 8.6e-09 67.4 52 55.8
SMO364G0797 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.1e-07 62.8 101 37.6
Cc00_g21220 Coffea canephora HOM05D004589 ORTHO05D005848 6.1e-07 61.2 55 54.5
Dinv28429 Davidia involucrata HOM05D004589 ORTHO05D178633 5.2e-06 58.2 53 56.6


User provided reference genes

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