Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G03460 Aquilegia oxysepala HOM05D007920 ORTHO05D009993 2.0e-68 262.3 131 100.0
TAR383G1062 Trochodendron aralioides HOM05D007920 ORTHO05D009993 8.7e-32 140.6 116 62.9
Nn8g39812 Nelumbo nucifera HOM05D007920 ORTHO05D009993 3.4e-28 128.6 100 64.0
Actinidia36878 Actinidia chinensis HOM05D007920 ORTHO05D009993 2.2e-27 125.9 115 58.3
Migut.D01101 Erythranthe guttata HOM05D007920 ORTHO05D009993 1.4e-26 123.2 91 65.9
Lj5C79G1 Lonicera japonica HOM05D007920 ORTHO05D009993 1.4e-26 123.2 116 58.6
Sopen03g035960 Solanum pennellii HOM05D007920 ORTHO05D009993 9.3e-26 120.6 116 50.9
SalBow6G4591 Salvia bowleyana HOM05D007920 ORTHO05D009993 1.2e-25 120.2 93 66.7
SalBow6G6899 Salvia bowleyana HOM05D007920 ORTHO05D009993 1.2e-25 120.2 93 66.7
SGA_v2.0_scaffold117G32314 Striga asiatica HOM05D007920 ORTHO05D009993 1.2e-25 120.2 97 59.8
Nitab4.5_0012943g0020 Nicotiana tabacum HOM05D007920 ORTHO05D009993 1.6e-25 119.8 116 52.6
PGSC0003DMG400014190 Solanum tuberosum HOM05D007920 ORTHO05D009993 2.7e-25 119.0 116 50.9
Hma1.2p1_0109F.1_g052370 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 3.5e-25 118.6 117 56.4
Nitab4.5_0001454g0110 Nicotiana tabacum HOM05D001080 ORTHO05D009993 1.8e-24 116.3 103 55.3
Rhsim12G0188100 Rhododendron simsii HOM05D007920 ORTHO05D009993 3.9e-24 115.2 116 53.4
Oeu060125.1 Olea europaea HOM05D007920 ORTHO05D009993 5.1e-24 114.8 97 58.8
MSTRG.9407 Avicennia marina HOM05D007920 ORTHO05D009993 2.5e-23 112.5 97 56.7
ATR0559G078 Amborella trichopoda HOM05D007920 ORTHO05D009993 1.3e-22 110.2 96 55.2
MD17G1221700 Malus domestica HOM05D007920 ORTHO05D009993 1.3e-22 110.2 95 54.7
CANSAT56G1317 Cannabis sativa HOM05D007920 ORTHO05D009993 2.1e-22 109.4 116 50.9
Cc04_g04970 Coffea canephora HOM05D007920 ORTHO05D009993 4.0e-21 105.1 93 58.1
HanXRQChr09g0274501 Helianthus annuus HOM05D007920 ORTHO05D009993 1.2e-20 103.6 116 48.3
HanXRQChr05g0154421 Helianthus annuus HOM05D007920 ORTHO05D009993 2.6e-20 102.4 116 50.0
Lsat_1_v5_gn_4_87000 Lactuca sativa HOM05D007920 ORTHO05D009993 4.5e-20 101.7 117 46.2
Prupe.3G096700 Prunus persica HOM05D007920 ORTHO05D009993 4.5e-20 101.7 95 54.7
Carub.0001s1570 Capsella rubella HOM05D007920 ORTHO05D009993 1.0e-19 100.5 95 51.6
TWI12G0021 Tripterygium wilfordii HOM05D007920 ORTHO05D009993 1.0e-19 100.5 94 51.1
HPP92_000037 Vanilla planifolia HOM05D001122 ORTHO05D001877 1.0e-19 100.5 94 48.9
Aa31LG7G480 Aethionema arabicum HOM05D007920 ORTHO05D009993 1.3e-19 100.1 91 54.9
CSS0007854 Camellia sinensis var. sinensis HOM05D007920 ORTHO05D009993 1.3e-19 100.1 91 56.0
AT1G15900 Arabidopsis thaliana HOM05D007920 ORTHO05D009993 1.7e-19 99.8 93 52.7
Cpa.g.sc10.92 Carica papaya HOM05D007920 ORTHO05D009993 1.7e-19 99.8 100 50.0
AL1G28072 Arabidopsis lyrata HOM05D007920 ORTHO05D009993 2.2e-19 99.4 96 50.0
Gohir.D09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 2.9e-19 99.0 97 52.6
FvH4_6g28800 Fragaria vesca HOM05D007920 ORTHO05D009993 3.8e-19 98.6 95 51.6
SEGI_11378 Sequoiadendron giganteum HOM05D007920 ORTHO05D009993 4.9e-19 98.2 111 45.0
unitig_736.g22804 Utricularia gibba HOM05D000537 ORTHO05D000776 4.9e-19 98.2 89 49.4
CARHR016410 Cardamine hirsuta HOM05D007920 ORTHO05D009993 6.5e-19 97.8 96 50.0
THA.LOC104808181 Tarenaya hassleriana HOM05D007920 ORTHO05D009993 6.5e-19 97.8 101 49.5
Sp1g14205 Schrenkiella parvula HOM05D007920 ORTHO05D009993 8.4e-19 97.4 96 49.0
Thecc.06G039600 Theobroma cacao HOM05D007920 ORTHO05D009993 8.4e-19 97.4 102 52.0
FAN02G0847 Fragaria x ananassa HOM05D007920 ORTHO05D009993 1.1e-18 97.1 93 52.7
FAN05G5030 Fragaria x ananassa HOM05D007920 ORTHO05D009993 1.4e-18 96.7 93 52.7
C05p14120 Brassica napus HOM05D000537 ORTHO05D000415 1.9e-18 96.3 93 50.5
BolC5t30143H Brassica oleracea HOM05D000537 ORTHO05D000415 1.9e-18 96.3 93 50.5
RcHm_v2.0_Chr2g0133221 Rosa chinensis HOM05D007920 ORTHO05D009993 2.5e-18 95.9 96 53.1
Sabra01G0032500 Salix brachista HOM05D001994 ORTHO05D001954 2.5e-18 95.9 105 47.6
FAN09G3519 Fragaria x ananassa HOM05D007920 ORTHO05D009993 3.2e-18 95.5 93 52.7
QL05p035351 Quercus lobata HOM05D007920 ORTHO05D009993 3.2e-18 95.5 96 47.9
BraA06t24364Z Brassica rapa HOM05D000537 ORTHO05D000415 4.2e-18 95.1 93 49.5
Potri.001G046900 Populus trichocarpa HOM05D007920 ORTHO05D009993 4.2e-18 95.1 96 50.0
A06p11940 Brassica napus HOM05D000537 ORTHO05D000415 5.5e-18 94.7 93 49.5
Duzib192G0651 Durio zibethinus HOM05D007920 ORTHO05D009993 5.5e-18 94.7 98 48.0
Sed0007883 Sechium edule HOM05D001994 ORTHO05D001954 5.5e-18 94.7 123 43.1
CiPaw.01G253600 Carya illinoinensis HOM05D007920 ORTHO05D009993 9.3e-18 94.0 110 43.6
Ca_01022_v3 Cicer arietinum L. HOM05D007920 ORTHO05D009993 9.3e-18 94.0 96 47.9
ClCG00G003920 Citrullus lanatus HOM05D007920 ORTHO05D009993 9.3e-18 94.0 96 52.1
ClCG07G012110 Citrullus lanatus HOM05D007920 ORTHO05D009993 9.3e-18 94.0 96 52.1
PGR031G3888 Punica granatum HOM05D007920 ORTHO05D009993 1.2e-17 93.6 91 51.6
Psat5g304800 Pisum sativum HOM05D007920 ORTHO05D009993 1.6e-17 93.2 97 47.4
MELO3C017832.2 Cucumis melo HOM05D007920 ORTHO05D009993 2.1e-17 92.8 94 50.0
Manes.11G065050 Manihot esculenta HOM05D007920 ORTHO05D009993 2.7e-17 92.4 91 51.6
Gorai.006G107000 Gossypium raimondii HOM05D007920 ORTHO05D009993 3.5e-17 92.0 97 50.5
Ciclev10026801m.g Citrus clementina HOM05D007920 ORTHO05D009993 6.0e-17 91.3 91 51.6
Lalb_Chr14g0374051 Lupinus albus HOM05D007920 ORTHO05D009993 6.0e-17 91.3 96 50.0
Medtr2g104930 Medicago truncatula HOM05D007920 ORTHO05D009993 6.0e-17 91.3 111 45.0
Mapoly0046s0029 Marchantia polymorpha HOM05D007920 ORTHO05D009993 7.9e-17 90.9 111 44.1
ECA232G4957 Erigeron canadensis HOM05D007920 ORTHO05D009993 1.0e-16 90.5 95 48.4
Lalb_Chr24g0395321 Lupinus albus HOM05D007920 ORTHO05D009993 1.3e-16 90.1 95 50.5
SHI00232 Sapria himalayana HOM05D007920 ORTHO05D009993 1.3e-16 90.1 91 47.3
CsaV3_4G002040 Cucumis sativus L. HOM05D001994 ORTHO05D001954 2.3e-16 89.4 94 46.8
Thhalv10009838m.g Eutrema salsugineum HOM05D007920 ORTHO05D009993 6.7e-16 87.8 91 49.5
Cfa000225 Carpinus fangiana HOM05D007920 ORTHO05D009993 8.7e-16 87.4 109 41.3
Gohir.A09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 8.7e-16 87.4 97 48.5
Lj3g0004979 Lotus japonicus HOM05D007920 ORTHO05D009993 1.1e-15 87.0 101 42.6
arahy.Tifrunner.gnm1.ann1.D8WECR Arachis hypogaea HOM05D007920 ORTHO05D009993 1.9e-15 86.3 116 44.8
Glyma.15G004000 Glycine max HOM05D007920 ORTHO05D009993 3.7e-14 82.0 92 45.7
VMungo1080G1626 Vigna mungo HOM05D007920 ORTHO05D009993 9.0e-13 77.4 98 44.9
FAN14G5942 Fragaria x ananassa HOM05D007920 ORTHO05D009993 1.5e-12 76.6 96 43.8
Phvul.005G182500 Phaseolus vulgaris HOM05D007920 ORTHO05D009993 1.5e-12 76.6 97 45.4
Sc12g0008420 Simmondsia chinensis HOM05D007920 ORTHO05D009993 2.0e-12 76.3 91 41.8
TPR.G36324 Trifolium pratense HOM05D007920 ORTHO05D009993 1.4e-10 70.1 97 40.2
Zm00001eb278260 Zea mays HOM05D007920 ORTHO05D009993 1.9e-10 69.7 87 47.1
COL.COLO4_26676 Corchorus olitorius HOM05D007920 ORTHO05D009993 2.5e-10 69.3 69 52.2
Ah.01g006840 Amaranthus hybridus HOM05D007920 ORTHO05D009993 1.2e-09 67.0 89 40.4
MD16G1196200 Malus domestica HOM05D007920 ORTHO05D009993 6.1e-09 64.7 63 44.4
Sc02g0006940 Simmondsia chinensis HOM05D007920 ORTHO05D009993 1.5e-07 60.1 87 37.9
Cre16.g667150 Chlamydomonas reinhardtii HOM05D007920 ORTHO05D009993 4.3e-07 58.5 93 38.7


User provided reference genes

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