Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G03458 Aquilegia oxysepala HOM05D004575 ORTHO05D005774 4.4e-104 381.3 195 100.0
MD02G1009800 Malus domestica HOM05D004575 ORTHO05D005774 6.5e-100 367.5 195 94.9
Prupe.7G260200 Prunus persica HOM05D004575 ORTHO05D005774 6.5e-100 367.5 195 94.9
AUR62039306 Chenopodium quinoa HOM05D004575 ORTHO05D005774 1.4e-99 366.3 195 94.4
RcHm_v2.0_Chr2g0085961 Rosa chinensis HOM05D004575 ORTHO05D005774 1.4e-99 366.3 195 94.4
Manes.14G111600 Manihot esculenta HOM05D004575 ORTHO05D005774 1.9e-99 365.9 195 93.8
Ah.09g232410 Amaranthus hybridus HOM05D004575 ORTHO05D005774 3.2e-99 365.2 195 92.8
Potri.006G187300 Populus trichocarpa HOM05D004575 ORTHO05D005774 3.2e-99 365.2 195 94.4
Duzib187G1707 Durio zibethinus HOM05D004575 ORTHO05D005774 4.2e-99 364.8 195 93.3
FvH4_1g01170 Fragaria vesca HOM05D004575 ORTHO05D005774 4.2e-99 364.8 195 93.8
Atru.chr7.129 Acer truncatum HOM05D004575 ORTHO05D005774 5.5e-99 364.4 195 93.8
Manes.06G037700 Manihot esculenta HOM05D004575 ORTHO05D005774 7.2e-99 364.0 195 93.3
PSO170G2264 Papaver somniferum HOM05D004575 ORTHO05D005774 7.2e-99 364.0 195 94.4
Cpa.g.sc46.126 Carica papaya HOM05D004575 ORTHO05D005774 1.2e-98 363.2 195 93.3
Dinv42882 Davidia involucrata HOM05D004575 ORTHO05D005774 1.2e-98 363.2 195 93.3
CiPaw.15G174300 Carya illinoinensis HOM05D004575 ORTHO05D005774 1.6e-98 362.8 195 93.3
Hma1.2p1_0171F.1_g075580 Hydrangea macrophylla HOM05D004575 ORTHO05D005774 1.6e-98 362.8 195 93.8
arahy.Tifrunner.gnm1.ann1.Y2RET6 Arachis hypogaea HOM05D004575 ORTHO05D005774 2.1e-98 362.5 195 93.3
VMungo1383G0542 Vigna mungo HOM05D004575 ORTHO05D005774 2.1e-98 362.5 195 92.8
Ca_03494_v3 Cicer arietinum L. HOM05D004575 ORTHO05D005774 2.7e-98 362.1 195 92.8
Cc06_g15230 Coffea canephora HOM05D004575 ORTHO05D005774 2.7e-98 362.1 195 93.3
TWI34G1141 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 2.7e-98 362.1 195 93.8
GSVIVG01023596001 Vitis vinifera HOM05D004575 ORTHO05D005774 2.7e-98 362.1 195 93.3
CANSAT11G1798 Cannabis sativa HOM05D004575 ORTHO05D005774 3.6e-98 361.7 195 92.3
Duzib150G0006 Durio zibethinus HOM05D004575 ORTHO05D005774 4.7e-98 361.3 195 92.8
Thecc.09G033600 Theobroma cacao HOM05D004575 ORTHO05D005774 4.7e-98 361.3 195 92.8
CSS0046088 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 6.1e-98 360.9 195 92.3
Cfa020846 Carpinus fangiana HOM05D004575 ORTHO05D005774 6.1e-98 360.9 195 92.8
Glyma.11G226500 Glycine max HOM05D004575 ORTHO05D005774 6.1e-98 360.9 195 92.3
Phvul.001G239800 Phaseolus vulgaris HOM05D004575 ORTHO05D005774 6.1e-98 360.9 195 92.3
THA.LOC104813540 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 6.1e-98 360.9 195 92.3
CDE05G0409 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 7.9e-98 360.5 195 92.3
Glyma.18G030800 Glycine max HOM05D004575 ORTHO05D005774 1.0e-97 360.1 195 92.3
Dinv43218 Davidia involucrata HOM05D004575 ORTHO05D005774 1.4e-97 359.8 193 92.7
Nn8g39815 Nelumbo nucifera HOM05D004575 ORTHO05D005774 1.4e-97 359.8 195 92.8
Psat5g127440 Pisum sativum HOM05D004575 ORTHO05D005774 1.4e-97 359.8 195 92.3
Potri.018G110000 Populus trichocarpa HOM05D004575 ORTHO05D005774 2.3e-97 359.0 195 92.8
CsaV3_6G007090 Cucumis sativus L. HOM05D004575 ORTHO05D005774 3.0e-97 358.6 195 92.3
Lj6g0023555 Lotus japonicus HOM05D004575 ORTHO05D005774 3.0e-97 358.6 195 91.8
TWI32G0637 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 3.0e-97 358.6 195 92.8
Lalb_Chr12g0198611 Lupinus albus HOM05D004575 ORTHO05D005774 3.9e-97 358.2 195 91.8
Sed0010156 Sechium edule HOM05D004575 ORTHO05D005774 3.9e-97 358.2 195 91.8
Gorai.009G054900 Gossypium raimondii HOM05D004575 ORTHO05D005774 5.2e-97 357.8 195 91.3
Medtr3g070070 Medicago truncatula HOM05D004575 ORTHO05D005774 6.7e-97 357.5 195 91.8
Os01g0708600 Oryza sativa ssp. japonica HOM05D004575 ORTHO05D005774 6.7e-97 357.5 195 91.3
Zm00001eb271220 Zea mays HOM05D004575 ORTHO05D005774 6.7e-97 357.5 195 91.3
SalBow1G0111 Salvia bowleyana HOM05D004575 ORTHO05D005774 8.8e-97 357.1 195 90.3
Gohir.A13G184800 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.1e-96 356.7 195 91.8
Gohir.D13G191200 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.1e-96 356.7 195 91.8
THA.LOC104817827 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 1.1e-96 356.7 195 91.3
ClCG06G001160 Citrullus lanatus HOM05D004575 ORTHO05D005774 1.5e-96 356.3 195 91.3
Gohir.A05G051600 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.5e-96 356.3 195 90.8
HanXRQChr15g0473271 Helianthus annuus HOM05D004575 ORTHO05D005774 1.5e-96 356.3 195 91.8
Nitab4.5_0006294g0110 Nicotiana tabacum HOM05D004575 ORTHO05D005774 1.5e-96 356.3 195 91.3
Lj6g0023669 Lotus japonicus HOM05D004575 ORTHO05D005774 2.0e-96 355.9 195 90.8
ATR0626G208 Amborella trichopoda HOM05D004575 ORTHO05D005774 2.6e-96 355.5 195 91.3
Nn2g12311 Nelumbo nucifera HOM05D004575 ORTHO05D005774 2.6e-96 355.5 199 91.0
Sed0010445 Sechium edule HOM05D004575 ORTHO05D005774 2.6e-96 355.5 195 91.3
Oeu050476.1 Olea europaea HOM05D004575 ORTHO05D005774 3.3e-96 355.1 195 90.8
TAR625G1476 Trochodendron aralioides HOM05D004575 ORTHO05D005774 5.7e-96 354.4 195 90.8
CAN.G1263.31 Capsicum annuum HOM05D004575 ORTHO05D005774 7.4e-96 354.0 195 91.3
Gohir.D05G053100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 7.4e-96 354.0 195 90.8
AL8G34130 Arabidopsis lyrata HOM05D004575 ORTHO05D005774 1.3e-95 353.2 193 90.7
MSTRG.6119 Avicennia marina HOM05D004575 ORTHO05D005774 1.3e-95 353.2 195 89.7
BolC3t13904H Brassica oleracea HOM05D004575 ORTHO05D005774 1.3e-95 353.2 193 90.7
Thhalv10014736m.g Eutrema salsugineum HOM05D004575 ORTHO05D005774 1.3e-95 353.2 193 90.7
Ciclev10009392m.g Citrus clementina HOM05D004575 ORTHO05D005774 1.7e-95 352.8 187 94.7
Lsat_1_v5_gn_6_106621 Lactuca sativa HOM05D004575 ORTHO05D005774 1.7e-95 352.8 195 90.3
DCAR_029638 Daucus carota HOM05D004575 ORTHO05D005774 2.2e-95 352.4 187 94.1
Gorai.013G217200 Gossypium raimondii HOM05D004575 ORTHO05D005774 2.2e-95 352.4 195 90.8
Aa31LG3G13850 Aethionema arabicum HOM05D004575 ORTHO05D005774 2.8e-95 352.1 193 90.2
AT5G58030 Arabidopsis thaliana HOM05D004575 ORTHO05D005774 2.8e-95 352.1 193 90.2
Carub.0008s1858 Capsella rubella HOM05D004575 ORTHO05D005774 2.8e-95 352.1 193 90.2
CARHR271840 Cardamine hirsuta HOM05D004575 ORTHO05D005774 2.8e-95 352.1 193 90.2
ECA246G3736 Erigeron canadensis HOM05D004575 ORTHO05D005774 2.8e-95 352.1 196 90.8
Solyc04g015050.3 Solanum lycopersicum HOM05D004575 ORTHO05D005774 2.8e-95 352.1 195 90.8
Sopen04g007070 Solanum pennellii HOM05D004575 ORTHO05D005774 2.8e-95 352.1 195 90.8
BolC2t07482H Brassica oleracea HOM05D004575 ORTHO05D005774 3.7e-95 351.7 193 90.7
Migut.K00340 Erythranthe guttata HOM05D004575 ORTHO05D005774 3.7e-95 351.7 195 89.7
PGSC0003DMG400015006 Solanum tuberosum HOM05D004575 ORTHO05D005774 3.7e-95 351.7 193 91.2
CSS0038411 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 6.3e-95 350.9 189 92.1
AUR62022430 Chenopodium quinoa HOM05D004575 ORTHO05D005774 6.3e-95 350.9 185 94.6
Dinv41397 Davidia involucrata HOM05D004575 ORTHO05D005774 6.3e-95 350.9 189 93.1
Haze_19234 Corylus avellana HOM05D004575 ORTHO05D005774 1.1e-94 350.1 186 94.1
Eucgr.C00362 Eucalyptus grandis HOM05D004575 ORTHO05D005774 1.1e-94 350.1 185 94.1
Sabra06G0143200 Salix brachista HOM05D004575 ORTHO05D005774 1.8e-94 349.4 188 92.6
CSS0012079 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 2.4e-94 349.0 189 92.1
COL.COLO4_18777 Corchorus olitorius HOM05D000537 ORTHO05D005774 3.1e-94 348.6 185 94.1
QL02p092713 Quercus lobata HOM05D004575 ORTHO05D005774 3.1e-94 348.6 185 94.1
TAR636G1369 Trochodendron aralioides HOM05D004575 ORTHO05D005774 3.1e-94 348.6 185 93.5
unitig_0.g919 Utricularia gibba HOM05D004575 ORTHO05D005774 7.0e-94 347.4 193 88.1
MELO3C022418.2 Cucumis melo HOM05D004575 ORTHO05D005774 2.0e-93 345.9 186 92.5
SEGI_30669 Sequoiadendron giganteum HOM05D004575 ORTHO05D005774 2.0e-93 345.9 195 88.2
Sp6g19710 Schrenkiella parvula HOM05D004575 ORTHO05D005774 1.0e-92 343.6 186 91.4
BraA03t10558Z Brassica rapa HOM05D004575 ORTHO05D005774 1.3e-92 343.2 186 91.4
Sabra18G0093000 Salix brachista HOM05D004575 ORTHO05D005774 2.2e-92 342.4 218 81.7
BcaB01g04472 Brassica carinata HOM05D004575 ORTHO05D005774 3.8e-92 341.7 185 91.4
A03p12440 Brassica napus HOM05D004575 ORTHO05D005774 3.8e-92 341.7 185 91.4
C03p14640 Brassica napus HOM05D004575 ORTHO05D005774 3.8e-92 341.7 185 91.4
BraA02t05876Z Brassica rapa HOM05D004575 ORTHO05D005774 3.8e-92 341.7 186 91.4
SGA_v2.0_scaffold45G17045 Striga asiatica HOM05D004575 ORTHO05D005774 6.5e-92 340.9 186 90.9
A02p08040 Brassica napus HOM05D004575 ORTHO05D005774 1.1e-91 340.1 185 91.4
C02p13680 Brassica napus HOM05D004575 ORTHO05D005774 1.1e-91 340.1 185 91.4
EL10Ac4g09955 Beta vulgaris HOM05D004575 ORTHO05D005774 7.2e-91 337.4 195 88.2
AagrBONN_evm.TU.Sc2ySwM_228.2396 Anthoceros agrestis HOM05D004575 ORTHO05D005774 9.4e-91 337.0 195 85.6
Lsat_1_v5_gn_9_77921 Lactuca sativa HOM05D004575 ORTHO05D005774 9.4e-91 337.0 186 90.3
Sabra06G0142200 Salix brachista HOM05D004575 ORTHO05D005774 6.1e-90 334.3 216 80.6
Mapoly0012s0171 Marchantia polymorpha HOM05D004575 ORTHO05D005774 1.0e-89 333.6 195 85.6
THA.LOC104817825 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 8.8e-89 330.5 226 77.0
Nitab4.5_0000147g0360 Nicotiana tabacum HOM05D004575 ORTHO05D005774 2.6e-88 328.9 195 85.6
Peaxi162Scf00811g00111 Petunia axillaris HOM05D004575 ORTHO05D005774 6.3e-87 324.3 195 84.6
CBR_g31075 Chara braunii HOM05D004575 ORTHO05D005774 2.7e-85 318.9 194 79.4
SMO356G0367 Selaginella moellendorffii HOM05D004575 ORTHO05D005774 4.5e-85 318.2 195 80.0
HPP92_023290 Vanilla planifolia HOM05D004575 ORTHO05D005774 1.0e-84 317.0 176 89.8
CDE05G3286 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 2.2e-84 315.8 195 83.6
FAN19G2168 Fragaria x ananassa HOM05D004575 ORTHO05D005774 6.3e-79 297.7 195 80.5
arahy.Tifrunner.gnm1.ann1.C8YHGX Arachis hypogaea HOM05D004575 ORTHO05D005774 3.1e-78 295.4 195 80.0
PSO017G5222 Papaver somniferum HOM05D004575 ORTHO05D005774 3.1e-78 295.4 195 80.5
PGR142G2168 Punica granatum HOM05D004575 ORTHO05D005774 9.1e-78 293.9 194 79.4
Hund04571 Selenicereus undatus HOM05D004575 ORTHO05D005774 9.1e-78 293.9 195 79.0
FAN26G2236 Fragaria x ananassa HOM05D004575 ORTHO05D005774 9.5e-75 283.9 186 80.1
FAN28G0045 Fragaria x ananassa HOM05D004575 ORTHO05D005774 9.5e-75 283.9 186 80.1
HanXRQChr01g0001761 Helianthus annuus HOM05D004575 ORTHO05D005774 1.2e-74 283.5 166 86.7
FAN23G2865 Fragaria x ananassa HOM05D004575 ORTHO05D005774 6.1e-74 281.2 186 79.6
Sc10g0009430 Simmondsia chinensis HOM05D004575 ORTHO05D005774 5.2e-73 278.1 150 93.3
Pp3c22_3220 Physcomitrium patens HOM05D004575 ORTHO05D005774 9.8e-72 273.9 195 73.3
MBI14_g37099_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D003073 1.9e-67 259.6 136 94.1
Pp3c19_5830 Physcomitrium patens HOM05D004575 ORTHO05D005774 2.4e-62 242.7 142 83.8
MCO07G641 Micromonas commoda HOM05D004575 ORTHO05D005774 3.5e-61 238.8 181 64.6
MBI10_g16410_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 7.3e-59 231.1 180 68.9
TPR.G29813 Trifolium pratense HOM05D004575 ORTHO05D005774 1.6e-58 229.9 124 92.7
MBI19_g38854_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 4.1e-54 215.3 119 91.6
MBI15_g16628_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 2.0e-53 213.0 123 86.2
Rhsim04G0120400 Rhododendron simsii HOM05D004575 ORTHO05D005774 7.8e-53 211.1 146 76.0
BcaB08g36156 Brassica carinata HOM05D004575 ORTHO05D005774 7.1e-46 188.0 186 58.6
Cre03.g146467 Chlamydomonas reinhardtii HOM05D004575 ORTHO05D005774 2.7e-45 186.0 188 51.6
PRCOL_00004142 Prasinoderma coloniale HOM05D004575 ORTHO05D005774 1.0e-44 184.1 173 55.5
Actinidia04286 Actinidia chinensis HOM05D004575 ORTHO05D005774 2.5e-43 179.5 93 95.7
Actinidia38338 Actinidia chinensis HOM05D004575 ORTHO05D005774 2.9e-39 166.0 83 96.4
MBI15_g43789_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 3.2e-38 162.5 123 70.7
MBI04_g06937_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 2.5e-35 152.9 75 97.3
MBI18_g29808_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 7.3e-35 151.4 75 96.0
MBI19_g16412_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 5.2e-33 145.2 79 92.4
Gohir.D05G367100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.6e-26 123.6 70 90.0
Gohir.D10G164601 Gossypium hirsutum HOM05D004575 ORTHO05D005774 8.1e-26 121.3 70 87.1
Peaxi162Scf00827g00622 Petunia axillaris HOM05D004575 ORTHO05D005774 3.0e-20 102.8 58 82.8
Lj7A455T27 Lonicera japonica HOM05D004575 ORTHO05D005774 6.2e-18 95.1 54 87.0
A10p16140 Brassica napus HOM05D004575 ORTHO05D005774 1.4e-17 94.0 109 50.5
Nitab4.5_0001296g0040 Nicotiana tabacum HOM05D001883 ORTHO05D002184 9.0e-17 91.3 108 51.9
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 1.1e-14 84.3 52 75.0
Lj7A455G28 Lonicera japonica HOM05D004575 ORTHO05D005774 1.1e-14 84.3 104 50.0
BolC3t13444H Brassica oleracea HOM05D004575 ORTHO05D010533 1.4e-14 84.0 42 95.2
C09p49950 Brassica napus HOM05D004575 ORTHO05D033743 5.5e-14 82.0 90 54.4
Gorai.010G087100 Gossypium raimondii HOM05D004575 ORTHO05D005774 7.1e-14 81.6 47 83.0
Gohir.D02G098900 Gossypium hirsutum HOM05D004575 ORTHO05D047984 3.9e-12 75.9 41 92.7
Gorai.010G090900 Gossypium raimondii HOM05D004575 ORTHO05D005774 1.1e-11 74.3 50 74.0
Gorai.007G286700 Gossypium raimondii HOM05D004575 ORTHO05D047984 5.6e-11 72.0 39 92.3
RcHm_v2.0_Chr2g0167881 Rosa chinensis HOM05D004575 ORTHO05D005774 2.4e-09 66.6 42 78.6
RcHm_v2.0_Chr2g0167891 Rosa chinensis HOM05D004575 ORTHO05D005774 2.4e-09 66.6 42 78.6
A01p23900 Brassica napus HOM05D001825 ORTHO05D010533 8.4e-07 58.2 39 74.4
MELO3C033919.2 Cucumis melo HOM05D004575 ORTHO05D168156 9.3e-06 54.7 69 43.5


User provided reference genes

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