Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 2.8e-174 615.1 305 100.0
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 1.2e-153 546.6 305 87.9
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 3.9e-152 541.6 305 84.9
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 3.3e-151 538.5 305 84.6
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 7.4e-151 537.3 305 84.3
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 3.1e-149 531.9 305 85.6
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 1.2e-148 530.0 305 84.9
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 1.2e-148 530.0 305 83.3
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 1.0e-147 526.9 304 84.5
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 1.3e-147 526.6 305 84.3
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 2.9e-147 525.4 305 83.9
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 2.9e-147 525.4 305 82.0
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 3.8e-147 525.0 305 84.3
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 6.5e-147 524.2 305 83.6
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 1.1e-146 523.5 305 82.0
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 1.1e-146 523.5 305 84.6
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 1.4e-146 523.1 305 83.3
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 1.9e-146 522.7 305 83.6
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 1.9e-146 522.7 305 82.0
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 4.2e-146 521.5 305 80.7
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 5.5e-146 521.2 305 82.3
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 7.2e-146 520.8 305 81.3
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 1.6e-145 519.6 305 81.6
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 1.6e-145 519.6 305 81.3
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 1.6e-145 519.6 305 82.0
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 2.1e-145 519.2 305 84.3
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 2.7e-145 518.8 305 80.0
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 2.7e-145 518.8 305 82.0
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 3.6e-145 518.5 305 81.6
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 3.6e-145 518.5 307 79.8
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 4.7e-145 518.1 305 81.0
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 6.1e-145 517.7 305 83.6
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 6.1e-145 517.7 305 82.0
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 7.9e-145 517.3 305 81.6
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 7.9e-145 517.3 305 81.3
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 2.3e-144 515.8 305 83.0
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 3.9e-144 515.0 305 82.3
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 3.9e-144 515.0 305 82.3
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 5.2e-144 514.6 305 82.6
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 6.7e-144 514.2 305 82.0
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 6.7e-144 514.2 305 82.0
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 8.8e-144 513.8 305 82.6
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 8.8e-144 513.8 305 82.3
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 1.1e-143 513.5 305 83.0
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 1.5e-143 513.1 305 82.0
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 1.5e-143 513.1 305 81.0
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 1.5e-143 513.1 305 82.0
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 2.0e-143 512.7 305 81.6
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 2.0e-143 512.7 305 82.0
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 2.6e-143 512.3 305 81.0
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 2.6e-143 512.3 305 81.0
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 3.3e-143 511.9 305 80.3
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 3.3e-143 511.9 305 81.6
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 5.7e-143 511.1 305 80.3
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 5.7e-143 511.1 305 81.6
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 9.7e-143 510.4 305 81.6
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 9.7e-143 510.4 303 82.8
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 1.3e-142 510.0 305 81.0
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 2.8e-142 508.8 305 79.0
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.8e-142 508.8 305 79.0
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 4.8e-142 508.1 305 79.0
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 4.8e-142 508.1 305 79.7
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 6.3e-142 507.7 301 83.4
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 8.2e-142 507.3 305 80.0
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 1.1e-141 506.9 305 80.7
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 1.1e-141 506.9 305 79.0
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 1.8e-141 506.1 305 80.3
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 2.4e-141 505.8 305 80.0
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 4.1e-141 505.0 305 78.0
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 5.3e-141 504.6 305 81.0
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 7.0e-141 504.2 326 77.6
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 1.6e-140 503.1 305 78.7
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 1.6e-140 503.1 301 83.1
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 1.6e-140 503.1 305 79.7
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 2.0e-140 502.7 305 80.0
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.5e-140 501.9 302 78.8
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 3.5e-140 501.9 305 80.3
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 5.9e-140 501.1 305 80.0
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 3.8e-139 498.4 300 80.7
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 5.0e-139 498.0 305 79.3
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 1.9e-138 496.1 305 79.3
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 4.2e-138 495.0 330 73.0
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 6.1e-137 491.1 308 77.6
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 1.8e-136 489.6 303 76.6
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 1.8e-136 489.6 305 76.1
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 2.3e-136 489.2 305 77.4
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 1.2e-135 486.9 305 78.0
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 1.5e-135 486.5 305 78.7
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 2.6e-135 485.7 302 78.5
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 3.3e-135 485.3 372 66.4
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 5.3e-133 478.0 307 77.2
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 9.1e-133 477.2 305 75.1
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 2.0e-132 476.1 307 73.9
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 3.5e-132 475.3 304 76.3
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 3.5e-132 475.3 303 77.2
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 6.5e-131 471.1 305 77.4
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 1.5e-130 469.9 307 72.6
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 5.5e-130 468.0 306 72.9
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 5.5e-130 468.0 306 72.9
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 5.5e-130 468.0 306 72.9
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 9.4e-130 467.2 307 73.6
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 1.2e-129 466.8 306 73.2
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 1.6e-129 466.5 307 73.6
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 1.6e-129 466.5 307 72.3
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 1.6e-129 466.5 305 73.1
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 2.3e-128 462.6 304 74.7
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 4.0e-128 461.8 304 74.3
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 4.0e-128 461.8 304 74.3
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 1.5e-127 459.9 388 62.4
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 9.8e-127 457.2 304 73.7
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 2.4e-117 426.0 304 66.4
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 1.0e-115 420.6 306 65.7
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 1.3e-115 420.2 304 65.8
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 1.2e-113 413.7 300 66.3
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 3.2e-109 399.1 305 66.9
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 7.0e-109 397.9 235 83.8
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 1.7e-107 393.3 303 63.7
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 3.9e-107 392.1 261 75.9
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 3.9e-107 392.1 302 62.9
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 1.5e-98 363.6 309 59.5
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 4.3e-98 362.1 225 80.0
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 8.3e-94 347.8 225 74.2
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 1.3e-91 340.5 208 77.9
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 2.8e-89 332.8 228 75.4
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 7.6e-71 271.6 160 81.2
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 3.3e-66 256.1 143 84.6
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 6.2e-65 251.9 149 78.5
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 6.4e-62 241.9 181 66.3
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 2.0e-55 220.3 153 69.9
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 3.8e-54 216.1 154 67.5
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 7.9e-52 208.4 301 44.5
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 4.8e-41 172.6 87 89.7
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 7.7e-39 165.2 85 88.2
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.0e-38 164.9 79 93.7
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 1.7e-38 164.1 80 91.2
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 5.0e-38 162.5 205 47.3
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 1.4e-37 161.0 80 87.5
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 2.6e-34 150.2 130 52.3
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 4.4e-34 149.4 125 57.6
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 1.7e-33 147.5 306 34.0
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 1.7e-33 147.5 299 33.1
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 2.2e-30 137.1 79 81.0
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 3.3e-26 123.2 76 75.0
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 3.5e-23 113.2 58 86.2
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 2.1e-20 104.0 64 75.0
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 3.6e-20 103.2 60 80.0
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 8.8e-19 98.6 69 84.1
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 1.3e-14 84.7 306 28.4
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 4.2e-13 79.7 245 26.1


User provided reference genes

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