Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G03424 Aquilegia oxysepala HOM05D005497 ORTHO05D006733 9.0e-224 780.0 416 100.0
TAR625G1494 Trochodendron aralioides HOM05D005497 ORTHO05D006733 1.9e-48 197.6 364 40.7
MBI15_g07765_MAGBIO Magnolia biondii HOM05D005497 ORTHO05D006733 5.2e-38 162.9 308 37.3
TAR626G1486 Trochodendron aralioides HOM05D005497 ORTHO05D006733 8.8e-38 162.2 417 34.5
Nn8g39876 Nelumbo nucifera HOM05D005497 ORTHO05D006733 2.8e-36 157.1 422 33.6
Hma1.2p1_1284F.1_g272900 Hydrangea macrophylla HOM05D005497 ORTHO05D006733 7.0e-35 152.5 421 34.9
Nn2g12349 Nelumbo nucifera HOM05D005497 ORTHO05D006733 3.5e-34 150.2 430 35.6
Actinidia10518 Actinidia chinensis HOM05D005497 ORTHO05D006733 5.0e-33 146.4 410 32.4
Nn8g39874 Nelumbo nucifera HOM05D005497 ORTHO05D006733 7.3e-32 142.5 354 33.6
Actinidia22292 Actinidia chinensis HOM05D005497 ORTHO05D006733 2.8e-31 140.6 424 32.1
Atru.chr7.2544 Acer truncatum HOM05D005497 ORTHO05D006733 4.4e-29 133.3 285 36.1
Haze_21422 Corylus avellana HOM05D005497 ORTHO05D006733 6.4e-28 129.4 415 31.1
Ciclev10008815m.g Citrus clementina HOM05D005497 ORTHO05D006733 7.0e-27 125.9 301 33.6
Phvul.009G087300 Phaseolus vulgaris HOM05D005497 ORTHO05D006733 1.2e-26 125.2 304 34.2
Glyma.04G061200 Glycine max HOM05D005497 ORTHO05D006733 4.6e-26 123.2 414 29.7
VMungo1309G2451 Vigna mungo HOM05D005497 ORTHO05D006733 5.9e-26 122.9 409 29.1
QL02p018953 Quercus lobata HOM05D005497 ORTHO05D006733 2.3e-25 120.9 296 34.1
AUR62031606 Chenopodium quinoa HOM05D005497 ORTHO05D006733 6.6e-25 119.4 284 33.1
Rhsim02G0213400 Rhododendron simsii HOM05D005497 ORTHO05D006733 1.1e-24 118.6 375 31.7
PGR044G0919 Punica granatum HOM05D005497 ORTHO05D006733 1.9e-24 117.9 426 31.2
Sabra18G0021900 Salix brachista HOM05D005497 ORTHO05D006733 9.5e-24 115.5 319 31.7
Cfa013061 Carpinus fangiana HOM05D001770 ORTHO05D001822 1.2e-23 115.2 271 35.1
Potri.018G019400 Populus trichocarpa HOM05D005497 ORTHO05D006733 1.6e-23 114.8 416 28.6
AUR62012481 Chenopodium quinoa HOM05D005497 ORTHO05D006733 2.1e-23 114.4 284 33.5
Actinidia23103 Actinidia chinensis HOM05D005497 ORTHO05D006733 2.8e-23 114.0 412 31.8
Glyma.06G061800 Glycine max HOM05D005497 ORTHO05D006733 2.8e-23 114.0 408 29.7
TWI32G0158 Tripterygium wilfordii HOM05D005497 ORTHO05D006733 2.8e-23 114.0 410 31.2
Ca_15775_v3 Cicer arietinum L. HOM05D005497 ORTHO05D006733 3.6e-23 113.6 312 31.1
Psat5g032840 Pisum sativum HOM05D005497 ORTHO05D006733 3.6e-23 113.6 291 33.3
Cpa.g.sc127.31 Carica papaya HOM05D005497 ORTHO05D006733 1.8e-22 111.3 283 34.3
vmacro11245 Vaccinium macrocarpon HOM05D005497 ORTHO05D006733 2.3e-22 110.9 400 29.8
Medtr3g106030 Medicago truncatula HOM05D005497 ORTHO05D006733 5.2e-22 109.8 302 32.1
FvH4_2g41090 Fragaria vesca HOM05D005497 ORTHO05D006733 8.9e-22 109.0 282 32.6
Dinv40973 Davidia involucrata HOM05D005497 ORTHO05D006733 3.4e-21 107.1 290 34.5
Thecc.09G016200 Theobroma cacao HOM05D005497 ORTHO05D006733 3.4e-21 107.1 295 32.2
Lalb_Chr08g0244421 Lupinus albus HOM05D005497 ORTHO05D006733 5.8e-21 106.3 315 34.0
arahy.Tifrunner.gnm1.ann1.FJBE5X Arachis hypogaea HOM05D005497 ORTHO05D006733 7.5e-21 105.9 310 31.6
ClCG05G016330 Citrullus lanatus HOM05D005497 ORTHO05D006733 7.5e-21 105.9 317 31.5
arahy.Tifrunner.gnm1.ann1.F9G1S6 Arachis hypogaea HOM05D005497 ORTHO05D006733 1.7e-20 104.8 310 31.3
Eucgr.F04316 Eucalyptus grandis HOM05D005497 ORTHO05D006733 1.7e-20 104.8 263 33.1
FAN15G1151 Fragaria x ananassa HOM05D005497 ORTHO05D006733 1.7e-20 104.8 291 32.0
RcHm_v2.0_Chr6g0299451 Rosa chinensis HOM05D005497 ORTHO05D006733 1.7e-20 104.8 415 29.4
Gohir.A05G059400 Gossypium hirsutum HOM05D005497 ORTHO05D006733 2.9e-20 104.0 298 31.9
Migut.A00338 Erythranthe guttata HOM05D005497 ORTHO05D006733 3.7e-20 103.6 311 32.8
MELO3C016964.2 Cucumis melo HOM05D005497 ORTHO05D006733 6.4e-20 102.8 288 31.9
Gorai.009G062600 Gossypium raimondii HOM05D005497 ORTHO05D006733 6.4e-20 102.8 298 31.9
EL10Ac2g04114 Beta vulgaris HOM05D005497 ORTHO05D006733 8.3e-20 102.4 291 33.3
Lj1g0009907 Lotus japonicus HOM05D005497 ORTHO05D006733 8.3e-20 102.4 326 31.6
Aqoxy2G02176 Aquilegia oxysepala HOM05D005497 ORTHO05D006733 1.1e-19 102.1 323 31.3
Manes.16G129200 Manihot esculenta HOM05D005497 ORTHO05D006733 1.1e-19 102.1 341 28.2
COL.COLO4_18946 Corchorus olitorius HOM05D001770 ORTHO05D001822 3.2e-19 100.5 295 31.5
Gohir.D05G061500 Gossypium hirsutum HOM05D005497 ORTHO05D006733 2.0e-18 97.8 298 31.2
Sed0001000 Sechium edule HOM05D005497 ORTHO05D006733 2.0e-18 97.8 305 31.8
Sc23g0006400 Simmondsia chinensis HOM05D005497 ORTHO05D006733 6.0e-18 96.3 357 27.5
TAR383G0546 Trochodendron aralioides HOM05D005497 ORTHO05D006733 1.0e-17 95.5 201 37.8
Gohir.A06G101600 Gossypium hirsutum HOM05D005497 ORTHO05D006733 2.3e-17 94.4 296 30.7
Gorai.010G118600 Gossypium raimondii HOM05D005497 ORTHO05D006733 2.3e-17 94.4 296 30.4
FAN05G5083 Fragaria x ananassa HOM05D005497 ORTHO05D006733 3.0e-17 94.0 270 31.5
Gohir.D06G103600 Gossypium hirsutum HOM05D005497 ORTHO05D006733 3.0e-17 94.0 369 28.7
CiPaw.07G229800 Carya illinoinensis HOM05D005497 ORTHO05D006733 5.0e-17 93.2 276 31.9
MBI16_g10973_MAGBIO Magnolia biondii HOM05D005497 ORTHO05D006733 6.6e-17 92.8 274 28.5
Duzib168G1440 Durio zibethinus HOM05D005497 ORTHO05D006733 8.6e-17 92.4 305 29.5
Os06g0648500 Oryza sativa ssp. japonica HOM05D005497 ORTHO05D006733 8.6e-17 92.4 302 31.5
THA.LOC104803861 Tarenaya hassleriana HOM05D005497 ORTHO05D006733 1.1e-16 92.0 340 27.6
Hund30561 Selenicereus undatus HOM05D005497 ORTHO05D006733 1.9e-16 91.3 185 37.3
Hund30563 Selenicereus undatus HOM05D005497 ORTHO05D006733 1.9e-16 91.3 196 35.7
Oeu030218.3 Olea europaea HOM05D005497 ORTHO05D006733 2.5e-16 90.9 306 31.7
Hund19563 Selenicereus undatus HOM05D005497 ORTHO05D006733 3.3e-16 90.5 314 29.3
Eucgr.C02658 Eucalyptus grandis HOM05D005497 ORTHO05D006733 7.3e-16 89.4 263 30.0
Nitab4.5_0002964g0010 Nicotiana tabacum HOM05D005497 ORTHO05D006733 8.1e-15 85.9 332 29.5
THA.LOC104799021 Tarenaya hassleriana HOM05D005497 ORTHO05D006733 1.1e-14 85.5 286 30.1
Peaxi162Scf00195g00412 Petunia axillaris HOM05D005497 ORTHO05D006733 1.8e-14 84.7 277 31.4
Sopen02g018670 Solanum pennellii HOM05D005497 ORTHO05D006733 1.8e-14 84.7 308 28.6
FAN27G2527 Fragaria x ananassa HOM05D005497 ORTHO05D006733 3.1e-14 84.0 197 35.0
Solyc02g069540.3 Solanum lycopersicum HOM05D005497 ORTHO05D006733 3.1e-14 84.0 288 28.5
PGSC0003DMG400021201 Solanum tuberosum HOM05D005497 ORTHO05D006733 3.1e-14 84.0 340 27.6
Nitab4.5_0001219g0100 Nicotiana tabacum HOM05D005497 ORTHO05D006733 5.2e-14 83.2 309 29.4
Prupe.1G393300 Prunus persica HOM05D005497 ORTHO05D006733 8.9e-14 82.4 286 28.0
Thhalv10025612m.g Eutrema salsugineum HOM05D005497 ORTHO05D006733 4.4e-13 80.1 289 24.6
Potri.006G263800 Populus trichocarpa HOM05D005497 ORTHO05D006733 7.5e-13 79.3 285 28.1
SalBow4G2467 Salvia bowleyana HOM05D005497 ORTHO05D006733 1.7e-12 78.2 300 30.3
AL7G20200 Arabidopsis lyrata HOM05D005497 ORTHO05D006733 2.2e-12 77.8 285 28.1
Sabra06G0206300 Salix brachista HOM05D005497 ORTHO05D006733 2.2e-12 77.8 287 28.6
MSTRG.25841 Avicennia marina HOM05D005497 ORTHO05D006733 2.9e-12 77.4 319 30.1
CARHR239720 Cardamine hirsuta HOM05D005497 ORTHO05D006733 3.7e-12 77.0 301 24.3
Manes.16G128200 Manihot esculenta HOM05D005497 ORTHO05D006733 4.9e-12 76.6 246 31.3
FAN23G0278 Fragaria x ananassa HOM05D005497 ORTHO05D006733 6.4e-12 76.3 247 30.4
ATR0739G202 Amborella trichopoda HOM05D005497 ORTHO05D006733 8.3e-12 75.9 283 31.4
FAN20G1858 Fragaria x ananassa HOM05D005497 ORTHO05D006733 1.4e-11 75.1 79 50.6
MD15G1039900 Malus domestica HOM05D005497 ORTHO05D006733 1.9e-11 74.7 405 25.7
Cc08_g07940 Coffea canephora HOM05D005497 ORTHO05D006733 2.4e-11 74.3 262 30.2
FAN19G2468 Fragaria x ananassa HOM05D005497 ORTHO05D006733 2.4e-11 74.3 252 30.2
Aa31LG2G18440 Aethionema arabicum HOM05D005497 ORTHO05D006733 3.2e-11 73.9 303 22.8
AT4G31805 Arabidopsis thaliana HOM05D005497 ORTHO05D006733 3.2e-11 73.9 315 26.7
A02p00730 Brassica napus HOM05D005497 ORTHO05D006733 4.1e-11 73.6 328 25.0
BraA02t05058Z Brassica rapa HOM05D005497 ORTHO05D006733 4.1e-11 73.6 328 25.0
MD08G1057500 Malus domestica HOM05D005497 ORTHO05D006733 5.4e-11 73.2 427 26.2
FAN11G1326 Fragaria x ananassa HOM05D005497 ORTHO05D006733 1.6e-10 71.6 247 29.6
PGR044G0855 Punica granatum HOM05D005497 ORTHO05D006733 2.1e-10 71.2 167 37.1
CAN.G675.26 Capsicum annuum HOM05D005497 ORTHO05D006733 2.7e-10 70.9 288 26.4
Carub.0007s0875 Capsella rubella HOM05D005497 ORTHO05D006733 4.6e-10 70.1 301 23.6
FAN22G2245 Fragaria x ananassa HOM05D005497 ORTHO05D006733 6.0e-10 69.7 247 29.1
Sp7g29600 Schrenkiella parvula HOM05D005497 ORTHO05D006733 6.0e-10 69.7 295 23.4
Nitab4.5_0001485g0140 Nicotiana tabacum HOM05D003672 ORTHO05D004121 7.8e-10 69.3 287 26.5
Dinv22781 Davidia involucrata HOM05D003672 ORTHO05D004121 1.0e-09 68.9 309 25.9
Zm00001eb388610 Zea mays HOM05D005497 ORTHO05D006733 2.3e-09 67.8 322 28.6
CsaV3_4G036590 Cucumis sativus L. HOM05D005497 ORTHO05D006733 5.1e-09 66.6 143 30.8
FAN01G0816 Fragaria x ananassa HOM05D005497 ORTHO05D006733 1.1e-08 65.5 157 35.7
Nitab4.5_0009401g0050 Nicotiana tabacum HOM05D003672 ORTHO05D004121 1.5e-08 65.1 286 24.8
Os06g0184200 Oryza sativa ssp. japonica HOM05D005497 ORTHO05D006733 1.5e-08 65.1 66 50.0
Thhalv10014215m.g Eutrema salsugineum HOM05D005497 ORTHO05D006733 1.9e-08 64.7 326 26.4
BolC9t59416H Brassica oleracea HOM05D005497 ORTHO05D006733 2.5e-08 64.3 79 44.3
Zm00001eb374680 Zea mays HOM05D005497 ORTHO05D006733 2.5e-08 64.3 305 25.6
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 3.3e-08 63.9 61 52.5
BcaNung01497 Brassica carinata HOM05D005497 ORTHO05D006733 4.3e-08 63.5 331 22.7
A03p61000 Brassica napus HOM05D005497 ORTHO05D006733 4.3e-08 63.5 326 23.3
C07p58900 Brassica napus HOM05D005497 ORTHO05D006733 4.3e-08 63.5 331 22.7
BolC7t46337H Brassica oleracea HOM05D005497 ORTHO05D006733 4.3e-08 63.5 331 22.7
BraA03t15141Z Brassica rapa HOM05D005497 ORTHO05D006733 4.3e-08 63.5 326 23.3
Cc00_g14840 Coffea canephora HOM05D003672 ORTHO05D004121 9.5e-08 62.4 302 24.8
A10p26790 Brassica napus HOM05D000238 ORTHO05D001043 1.2e-07 62.0 61 50.8
HPP92_015875 Vanilla planifolia HOM05D005497 ORTHO05D004339 1.2e-07 62.0 417 25.9
AT5G10890 Arabidopsis thaliana HOM05D005497 ORTHO05D006733 1.6e-07 61.6 163 33.7
BolC2t06432H Brassica oleracea HOM05D005497 ORTHO05D006733 1.6e-07 61.6 327 24.8
Os02g0795200 Oryza sativa ssp. japonica HOM05D005497 ORTHO05D006733 1.6e-07 61.6 302 24.5
Ciclev10019089m.g Citrus clementina HOM05D003672 ORTHO05D004121 2.1e-07 61.2 288 23.3
BcaC03g13338 Brassica carinata HOM05D001770 ORTHO05D006733 4.7e-07 60.1 327 25.1
Hma1.2p1_0060F.1_g033090 Hydrangea macrophylla HOM05D003672 ORTHO05D004121 4.7e-07 60.1 386 23.6
HPP92_021896 Vanilla planifolia HOM05D005497 ORTHO05D006733 8.1e-07 59.3 278 29.5
Peaxi162Scf00201g00329 Petunia axillaris HOM05D003672 ORTHO05D004121 1.8e-06 58.2 286 25.9
Hund02585 Selenicereus undatus HOM05D003672 ORTHO05D004121 1.8e-06 58.2 276 26.8
Carub.0006s0938 Capsella rubella HOM05D005497 ORTHO05D006733 2.4e-06 57.8 310 25.5
BcaNung01901 Brassica carinata HOM05D005497 ORTHO05D006733 3.1e-06 57.4 381 25.2
C02p04730 Brassica napus HOM05D005497 ORTHO05D006733 3.1e-06 57.4 326 25.8
C09p65930 Brassica napus HOM05D000238 ORTHO05D002998 4.0e-06 57.0 61 49.2
arahy.Tifrunner.gnm1.ann1.SKH1UB Arachis hypogaea HOM05D003672 ORTHO05D004121 5.2e-06 56.6 347 25.6
CDE05G3287 Ceratophyllum demersum HOM05D005497 ORTHO05D006733 5.2e-06 56.6 287 26.8
Atru.chr9.577 Acer truncatum HOM05D003672 ORTHO05D004121 8.9e-06 55.8 298 24.5
BcaB03g12720 Brassica carinata HOM05D005497 ORTHO05D006733 8.9e-06 55.8 48 60.4


User provided reference genes

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