Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 1.9e-105 386.0 208 100.0
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 7.2e-65 251.1 205 67.8
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 9.5e-65 250.8 205 67.8
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 7.0e-60 234.6 205 65.4
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 7.0e-60 234.6 206 65.0
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 9.2e-60 234.2 205 64.4
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 1.0e-58 230.7 203 62.1
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 1.0e-55 220.7 205 61.0
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 1.8e-55 219.9 200 62.0
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 2.3e-55 219.5 202 58.9
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 4.0e-55 218.8 207 60.4
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 5.2e-55 218.4 203 61.1
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 6.8e-55 218.0 209 59.8
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 6.8e-55 218.0 203 59.1
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 1.5e-54 216.9 200 59.0
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 1.5e-54 216.9 209 58.9
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 2.0e-54 216.5 208 61.1
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 2.0e-54 216.5 208 61.1
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 7.5e-54 214.5 204 60.3
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 7.5e-54 214.5 202 54.5
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 9.8e-54 214.2 199 59.8
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 9.8e-54 214.2 210 57.6
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 9.8e-54 214.2 200 58.0
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 1.3e-53 213.8 204 59.3
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 1.3e-53 213.8 201 54.7
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 1.3e-53 213.8 205 55.1
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 6.4e-53 211.5 203 55.7
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 8.3e-53 211.1 209 56.5
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 8.3e-53 211.1 199 61.3
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 1.4e-52 210.3 204 60.8
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 4.1e-52 208.8 207 58.0
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 9.2e-52 207.6 199 56.8
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 1.2e-51 207.2 203 58.1
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 1.2e-51 207.2 202 58.9
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 1.2e-51 207.2 201 59.2
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 1.6e-51 206.8 204 58.3
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 2.0e-51 206.5 202 58.9
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 3.5e-51 205.7 197 58.9
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 4.6e-51 205.3 202 58.4
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 6.0e-51 204.9 203 54.7
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 1.0e-50 204.1 201 55.2
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 1.7e-50 203.4 202 58.4
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 2.3e-50 203.0 207 56.5
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 3.0e-50 202.6 204 55.9
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 3.9e-50 202.2 207 56.0
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 8.6e-50 201.1 205 56.1
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 1.1e-49 200.7 205 55.6
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 1.1e-49 200.7 205 53.2
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.5e-49 200.3 188 62.8
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 3.3e-49 199.1 205 55.1
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 4.3e-49 198.7 207 55.1
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 9.5e-49 197.6 202 56.4
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.2e-48 197.2 207 55.6
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 1.2e-48 197.2 165 62.4
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 1.6e-48 196.8 203 54.7
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 1.6e-48 196.8 207 54.6
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 1.6e-48 196.8 201 53.2
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 2.1e-48 196.4 199 55.8
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 2.8e-48 196.1 208 57.2
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 2.8e-48 196.1 181 58.6
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 3.6e-48 195.7 208 55.3
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 3.6e-48 195.7 194 57.2
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 4.7e-48 195.3 194 56.7
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 4.7e-48 195.3 199 54.3
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 6.2e-48 194.9 207 55.1
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 8.0e-48 194.5 199 55.8
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 1.1e-47 194.1 202 53.5
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 1.8e-47 193.4 204 51.5
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 4.0e-47 192.2 207 54.1
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 8.9e-47 191.0 207 54.1
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 2.0e-46 189.9 200 56.5
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 2.0e-46 189.9 197 53.3
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 2.6e-46 189.5 202 53.0
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 4.4e-46 188.7 208 51.9
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 5.8e-46 188.3 209 56.0
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 3.7e-45 185.7 216 53.7
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 3.7e-45 185.7 210 53.8
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 6.4e-45 184.9 199 53.8
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 1.9e-44 183.3 203 48.8
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 5.4e-44 181.8 203 50.7
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 7.0e-44 181.4 203 50.2
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 1.6e-43 180.3 210 54.3
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 2.1e-43 179.9 201 48.3
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 2.1e-43 179.9 203 49.3
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 3.5e-43 179.1 203 48.3
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 3.5e-43 179.1 203 48.3
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 6.0e-43 178.3 196 53.6
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 7.8e-43 177.9 203 48.3
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 1.0e-42 177.6 204 51.0
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 3.0e-42 176.0 203 47.8
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 3.0e-42 176.0 205 51.7
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 1.1e-41 174.1 199 49.7
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 1.1e-41 174.1 204 50.5
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 4.3e-41 172.2 200 46.5
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 9.5e-41 171.0 202 45.0
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 9.5e-41 171.0 143 62.2
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 6.2e-40 168.3 184 50.5
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 8.1e-40 167.9 203 48.3
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 8.1e-40 167.9 203 48.3
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 8.1e-40 167.9 203 48.3
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 1.1e-39 167.5 132 67.4
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 1.8e-39 166.8 203 48.3
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 1.8e-39 166.8 200 46.5
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 6.8e-39 164.9 226 43.4
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 8.9e-39 164.5 226 42.9
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 2.0e-38 163.3 199 47.7
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 2.6e-38 162.9 200 44.5
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 4.4e-38 162.2 203 47.3
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 3.7e-37 159.1 202 46.0
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 4.9e-37 158.7 201 44.8
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 1.1e-36 157.5 203 44.8
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 1.4e-36 157.1 209 50.2
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 2.4e-36 156.4 202 43.1
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 5.6e-33 145.2 205 48.8
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 5.8e-30 135.2 119 65.5
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 1.4e-28 130.6 124 63.7
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 1.5e-25 120.6 199 37.7
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 1.5e-25 120.6 198 43.9
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 1.9e-25 120.2 199 37.7
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 3.3e-25 119.4 199 37.7
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 3.3e-25 119.4 199 37.7
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 3.1e-23 112.8 85 67.1
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 1.2e-22 110.9 198 37.9
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 2.2e-21 106.7 199 36.2
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 2.7e-19 99.8 158 38.6
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 1.0e-18 97.8 197 35.5
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 3.9e-18 95.9 202 35.1
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 6.6e-18 95.1 185 37.8
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 8.7e-18 94.7 187 31.0
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 1.9e-17 93.6 194 36.1
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 5.6e-17 92.0 198 31.8
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 9.6e-17 91.3 189 36.0
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 2.8e-16 89.7 194 34.0
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 6.4e-13 78.6 134 40.3
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 2.3e-10 70.1 175 33.7
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 3.3e-09 66.2 87 39.1
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 1.3e-08 64.3 58 56.9
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 1.4e-07 60.8 155 29.0
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 2.4e-07 60.1 70 47.1
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 1.2e-06 57.8 97 30.9
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 4.5e-06 55.8 67 47.8


User provided reference genes

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