Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 1.3e-97 359.8 187 100.0
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 5.0e-57 224.9 185 67.6
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 2.1e-55 219.5 177 67.8
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 4.8e-52 208.4 185 66.5
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 4.8e-52 208.4 185 64.9
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 3.5e-50 202.2 185 64.9
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 3.8e-49 198.7 190 58.4
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 5.5e-48 194.9 178 64.0
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 7.2e-48 194.5 188 59.6
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 1.6e-47 193.4 184 60.9
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 2.7e-47 192.6 184 60.3
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 8.0e-47 191.0 187 60.4
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 5.2e-46 188.3 185 58.4
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 4.4e-45 185.3 186 56.5
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 2.8e-44 182.6 176 58.5
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 1.1e-43 180.6 189 56.6
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 1.8e-43 179.9 184 57.6
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 1.8e-43 179.9 190 57.9
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 1.8e-43 179.9 190 57.9
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 2.4e-43 179.5 191 56.0
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 3.1e-43 179.1 189 55.6
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 5.4e-43 178.3 186 59.7
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 5.0e-41 171.8 187 54.5
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 6.6e-41 171.4 193 56.5
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 8.6e-41 171.0 187 57.2
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 2.1e-39 166.4 187 51.9
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 2.8e-39 166.0 194 52.1
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 2.8e-39 166.0 185 50.8
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 2.8e-39 166.0 181 55.2
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 3.6e-39 165.6 181 57.5
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 5.2e-38 161.8 187 54.5
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 6.8e-38 161.4 184 56.5
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 2.0e-37 159.8 189 52.4
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 3.4e-37 159.1 188 51.6
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 7.5e-37 157.9 187 52.9
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 1.3e-36 157.1 181 51.4
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 2.2e-36 156.4 187 52.4
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 2.2e-36 156.4 187 50.8
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 2.9e-36 156.0 189 52.9
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 4.9e-36 155.2 206 47.1
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 2.4e-35 152.9 187 51.3
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 4.1e-35 152.1 189 49.7
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 7.0e-35 151.4 190 48.9
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 9.2e-35 151.0 183 51.4
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 1.6e-34 150.2 185 50.3
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 3.5e-34 149.1 189 48.7
PGR142G2563 Punica granatum HOM05D004507 ORTHO05D004874 7.8e-34 147.9 196 50.0
MBI14_g08083_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 3.9e-33 145.6 151 58.3
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 5.0e-33 145.2 199 46.7
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 8.6e-33 144.4 182 50.5
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 1.1e-32 144.1 184 47.8
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 2.5e-32 142.9 190 47.9
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 7.3e-32 141.4 189 47.1
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 1.6e-31 140.2 184 45.1
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.6e-31 140.2 185 47.6
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 2.1e-31 139.8 184 47.8
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 2.1e-31 139.8 189 48.7
Lsat_1_v5_gn_7_51920 Lactuca sativa HOM05D004507 ORTHO05D004874 3.6e-31 139.0 188 46.3
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 6.2e-31 138.3 183 46.4
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 8.0e-31 137.9 184 45.7
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 1.0e-30 137.5 184 45.7
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 1.0e-30 137.5 183 47.0
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 1.0e-30 137.5 189 48.1
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.0e-30 137.5 187 43.9
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 1.0e-30 137.5 191 46.1
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 1.4e-30 137.1 186 47.8
AT4G30410 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 1.8e-30 136.7 184 45.7
DCAR_017942 Daucus carota HOM05D004507 ORTHO05D004874 1.8e-30 136.7 194 45.9
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 2.3e-30 136.3 187 48.7
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 2.3e-30 136.3 185 45.9
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 4.0e-30 135.6 184 45.7
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 4.0e-30 135.6 184 45.7
CDE05G1486 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 4.0e-30 135.6 155 52.9
Phvul.003G151300 Phaseolus vulgaris HOM05D004507 ORTHO05D004874 1.2e-29 134.0 185 48.1
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 1.2e-29 134.0 193 45.1
CDE02G1288 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 1.5e-29 133.7 162 50.6
HanXRQChr09g0245171 Helianthus annuus HOM05D004507 ORTHO05D004874 1.5e-29 133.7 157 52.2
A01p07760 Brassica napus HOM05D004507 ORTHO05D004874 2.0e-29 133.3 184 42.9
BraA01t00720Z Brassica rapa HOM05D004507 ORTHO05D004874 2.0e-29 133.3 184 42.9
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 3.4e-29 132.5 185 44.3
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 3.4e-29 132.5 182 47.8
CSS0033256 Camellia sinensis var. sinensis HOM05D004507 ORTHO05D004874 4.4e-29 132.1 149 55.0
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 5.8e-29 131.7 184 44.0
TPR.G5348 Trifolium pratense HOM05D004507 ORTHO05D004874 5.8e-29 131.7 185 45.4
C01p08650 Brassica napus HOM05D004507 ORTHO05D004874 7.5e-29 131.3 184 42.4
BcaB03g12646 Brassica carinata HOM05D004507 ORTHO05D004874 9.8e-29 131.0 184 42.9
BcaB03g12647 Brassica carinata HOM05D004507 ORTHO05D004874 9.8e-29 131.0 184 42.9
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 9.8e-29 131.0 186 46.2
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 9.8e-29 131.0 184 44.0
Migut.K00276 Erythranthe guttata HOM05D004507 ORTHO05D004874 1.3e-28 130.6 179 48.0
THA.LOC104803927 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.3e-28 130.6 185 42.7
MSTRG.10721 Avicennia marina HOM05D004507 ORTHO05D004874 1.7e-28 130.2 177 46.9
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 1.7e-28 130.2 183 46.4
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 1.7e-28 130.2 186 46.2
Psat0s1742g0040 Pisum sativum HOM05D004507 ORTHO05D004874 2.2e-28 129.8 184 45.1
BcaC01g01152 Brassica carinata HOM05D004507 ORTHO05D004874 2.9e-28 129.4 184 43.5
C03p88720 Brassica napus HOM05D004507 ORTHO05D004874 2.9e-28 129.4 184 43.5
HanXRQChr12g0358031 Helianthus annuus HOM05D004507 ORTHO05D004874 2.9e-28 129.4 157 48.4
arahy.Tifrunner.gnm1.ann1.RZ4SGF Arachis hypogaea HOM05D004507 ORTHO05D004874 3.7e-28 129.0 184 44.6
BolC3t21183H Brassica oleracea HOM05D004507 ORTHO05D004874 3.7e-28 129.0 184 43.5
Lsat_1_v5_gn_8_64381 Lactuca sativa HOM05D004507 ORTHO05D004874 4.9e-28 128.6 191 45.0
BcaC09g51830 Brassica carinata HOM05D004507 ORTHO05D004874 6.4e-28 128.3 184 41.8
BolC1t00847H Brassica oleracea HOM05D004507 ORTHO05D004874 6.4e-28 128.3 184 41.8
CsaV3_2G007890 Cucumis sativus L. HOM05D004507 ORTHO05D004874 8.3e-28 127.9 180 45.0
arahy.Tifrunner.gnm1.ann1.40EERC Arachis hypogaea HOM05D004507 ORTHO05D004874 1.1e-27 127.5 184 44.0
MSTRG.6179 Avicennia marina HOM05D004507 ORTHO05D004874 1.4e-27 127.1 185 43.8
AUR62028409 Chenopodium quinoa HOM05D004507 ORTHO05D004874 1.9e-27 126.7 157 52.9
HanXRQChr03g0066301 Helianthus annuus HOM05D004507 ORTHO05D004874 3.2e-27 125.9 157 51.6
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 7.0e-27 124.8 184 43.5
AUR62039753 Chenopodium quinoa HOM05D004507 ORTHO05D004874 9.2e-27 124.4 156 51.3
ATR0580G302 Amborella trichopoda HOM05D004507 ORTHO05D004874 1.6e-26 123.6 180 41.7
Medtr4g129560 Medicago truncatula HOM05D004507 ORTHO05D004874 2.7e-26 122.9 189 44.4
Oeu031854.1 Olea europaea HOM05D004507 ORTHO05D004874 2.7e-26 122.9 155 51.6
SGA_v2.0_scaffold66G22517 Striga asiatica HOM05D004507 ORTHO05D004874 6.0e-26 121.7 185 41.6
SGA_v2.0_scaffold69G23313 Striga asiatica HOM05D004507 ORTHO05D004874 3.0e-25 119.4 197 40.6
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 2.5e-24 116.3 190 40.0
MD13G1260000 Malus domestica HOM05D004507 ORTHO05D004874 7.3e-24 114.8 169 43.8
MSTRG.19674 Avicennia marina HOM05D004507 ORTHO05D004874 5.2e-22 108.6 179 41.9
MD16G1262200 Malus domestica HOM05D004507 ORTHO05D004874 8.9e-22 107.8 165 45.5
Sed0015365 Sechium edule HOM05D004507 ORTHO05D004874 4.4e-21 105.5 173 41.0
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 9.8e-21 104.4 189 39.2
BcaB08g36143 Brassica carinata HOM05D004507 ORTHO05D004874 3.7e-20 102.4 177 35.6
AT5G57780 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 6.4e-20 101.7 168 38.1
Carub.0008s1829 Capsella rubella HOM05D004507 ORTHO05D004874 8.3e-20 101.3 169 37.9
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 8.3e-20 101.3 183 36.1
SHI49167 Sapria himalayana HOM05D004507 ORTHO05D004874 1.9e-19 100.1 184 37.0
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 2.4e-19 99.8 171 42.7
Thhalv10014877m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 2.7e-18 96.3 180 35.6
BcaC04g19929 Brassica carinata HOM05D004507 ORTHO05D004874 4.6e-18 95.5 170 37.1
BolC9t57818H Brassica oleracea HOM05D004507 ORTHO05D004874 4.6e-18 95.5 170 37.1
A10p15150 Brassica napus HOM05D004507 ORTHO05D004874 1.0e-17 94.4 168 37.5
BraA10t43598Z Brassica rapa HOM05D004507 ORTHO05D004874 1.0e-17 94.4 168 37.5
CARHR271510 Cardamine hirsuta HOM05D004507 ORTHO05D004874 1.0e-17 94.4 168 38.7
AL8G33810 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 1.3e-17 94.0 168 36.9
C09p49660 Brassica napus HOM05D004507 ORTHO05D004874 1.7e-17 93.6 168 36.9
Sp6g19460 Schrenkiella parvula HOM05D004507 ORTHO05D004874 5.1e-17 92.0 173 35.3
unitig_62.g23492 Utricularia gibba HOM05D004507 ORTHO05D004874 5.1e-17 92.0 177 36.2
GSVIVG01023743001 Vitis vinifera HOM05D004507 ORTHO05D004874 6.6e-17 91.7 81 60.5
ClCG11G012600 Citrullus lanatus HOM05D004507 ORTHO05D004874 2.5e-16 89.7 140 39.3
CANSAT11G0203 Cannabis sativa HOM05D004507 ORTHO05D004874 3.3e-16 89.4 190 33.7
Cc06_g14060 Coffea canephora HOM05D004507 ORTHO05D004874 4.3e-16 89.0 182 35.7
Zm00001eb412560 Zea mays HOM05D004507 ORTHO05D004874 5.6e-16 88.6 200 36.5
SEGI_26334 Sequoiadendron giganteum HOM05D000047 ORTHO05D000044 1.4e-14 84.0 188 33.5
Os02g0178700 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 3.1e-14 82.8 188 34.0
Os02g0791300 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 4.9e-12 75.5 187 34.8
Zm00001eb389070 Zea mays HOM05D004507 ORTHO05D004874 6.4e-12 75.1 183 30.6
SalBow1G3357 Salvia bowleyana HOM05D004507 ORTHO05D004874 1.4e-11 73.9 94 41.5
SEGI_39312 Sequoiadendron giganteum HOM05D004507 ORTHO05D004874 2.4e-11 73.2 160 36.2
Solyc07g006310.1 Solanum lycopersicum HOM05D004507 ORTHO05D004874 1.1e-08 64.3 48 66.7
Zm00001eb192600 Zea mays HOM05D004507 ORTHO05D004874 1.9e-08 63.5 171 32.7
CDE02G3054 Ceratophyllum demersum HOM05D001966 ORTHO05D011119 2.5e-08 63.2 106 36.8
Zm00001eb233860 Zea mays HOM05D004507 ORTHO05D004874 5.6e-08 62.0 53 50.9
SHI24759 Sapria himalayana HOM05D016562 ORTHO05D004874 2.1e-07 60.1 52 59.6
SEGI_00160 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 2.1e-07 60.1 205 29.8
SEGI_03314 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 4.7e-07 58.9 195 27.7
SEGI_10463 Sequoiadendron giganteum HOM05D058585 ORTHO05D050936 6.2e-07 58.5 207 32.4
BcaB01g04486 Brassica carinata HOM05D004507 ORTHO05D004874 1.4e-06 57.4 91 36.3
unitig_37.g12687 Utricularia gibba HOM05D004507 ORTHO05D004874 1.8e-06 57.0 90 37.8
SEGI_14977 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 3.1e-06 56.2 193 29.0
Os06g0653200 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 6.8e-06 55.1 159 32.1


User provided reference genes

Program Settings