Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G03204 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 3.4e-146 521.9 321 100.0
Aqoxy7G03205 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 9.4e-88 327.8 322 63.0
Aqoxy7G03208 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 7.0e-75 285.0 321 52.6
Aqoxy7G03206 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 1.6e-55 220.7 316 50.3
TAR625G0177 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.5e-40 171.0 308 37.7
MBI14_g30692_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 5.1e-33 146.0 301 35.2
MBI14_g30694_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 2.1e-31 140.6 310 33.2
TAR626G1729 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.6e-29 133.7 302 31.8
TAR626G0702 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.1e-27 128.3 312 30.8
ATR0580G065 Amborella trichopoda HOM05D004960 ORTHO05D004696 1.2e-26 124.8 312 28.5
Thecc.09G162700 Theobroma cacao HOM05D004960 ORTHO05D004696 1.2e-26 124.8 315 28.6
TWI63G1126 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 2.1e-26 124.0 312 27.9
Cfa013540 Carpinus fangiana HOM05D004960 ORTHO05D004696 4.6e-26 122.9 299 27.1
MD16G1263500 Malus domestica HOM05D004960 ORTHO05D004696 8.7e-25 118.6 310 31.3
Haze_10109 Corylus avellana HOM05D004960 ORTHO05D004696 1.1e-24 118.2 299 25.8
BraA06t26242Z Brassica rapa HOM05D004960 ORTHO05D004696 1.5e-24 117.9 323 37.8
A06p33120 Brassica napus HOM05D004960 ORTHO05D004696 2.5e-24 117.1 323 37.2
Dinv41300 Davidia involucrata HOM05D004960 ORTHO05D004696 2.5e-24 117.1 305 29.2
Nn2g12577 Nelumbo nucifera HOM05D004960 ORTHO05D004696 3.3e-24 116.7 320 31.2
BcaC01g02853 Brassica carinata HOM05D004960 ORTHO05D004696 4.3e-24 116.3 323 38.7
BolC3t18198H Brassica oleracea HOM05D004960 ORTHO05D004696 4.3e-24 116.3 323 38.7
Nn8g40270 Nelumbo nucifera HOM05D004960 ORTHO05D004696 4.3e-24 116.3 321 30.2
MBI14_g30695_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 6.2e-23 112.5 315 30.2
Prupe.1G095900 Prunus persica HOM05D004960 ORTHO05D004696 6.2e-23 112.5 322 29.2
BcaB08g34825 Brassica carinata HOM05D004960 ORTHO05D004696 8.1e-23 112.1 322 36.6
C03p59340 Brassica napus HOM05D004960 ORTHO05D004696 8.1e-23 112.1 315 34.0
CSS0015847 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 8.1e-23 112.1 301 30.2
ATR0580G174 Amborella trichopoda HOM05D004960 ORTHO05D004696 1.8e-22 110.9 295 28.1
Cc06_g13870 Coffea canephora HOM05D004960 ORTHO05D004696 1.8e-22 110.9 320 30.0
MBI14_g30696_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.8e-22 110.9 313 29.7
COL.COLO4_16060 Corchorus olitorius HOM05D004960 ORTHO05D004696 4.0e-22 109.8 307 27.7
Eucgr.C00202 Eucalyptus grandis HOM05D004960 ORTHO05D004696 4.0e-22 109.8 293 31.4
RcHm_v2.0_Chr4g0404721 Rosa chinensis HOM05D004960 ORTHO05D004696 6.9e-22 109.0 318 28.0
MBI14_g30701_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.2e-21 108.2 299 26.4
BcaC04g21483 Brassica carinata HOM05D004960 ORTHO05D004696 2.0e-21 107.5 331 28.7
C09p31280 Brassica napus HOM05D004960 ORTHO05D004696 2.0e-21 107.5 331 28.7
Atru.chr7.532 Acer truncatum HOM05D004960 ORTHO05D004696 2.6e-21 107.1 312 27.9
Hma1.2p1_0921F.1_g236760 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 2.6e-21 107.1 311 25.1
Hma1.2p1_0921F.1_g236792 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 2.6e-21 107.1 311 25.1
RcHm_v2.0_Chr4g0404711 Rosa chinensis HOM05D004960 ORTHO05D004696 9.9e-21 105.1 319 26.6
TAR383G0876 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.2e-20 104.0 297 27.6
BolC9t54315H Brassica oleracea HOM05D004960 ORTHO05D004696 2.9e-20 103.6 330 29.4
Dinv43330 Davidia involucrata HOM05D004960 ORTHO05D004696 2.9e-20 103.6 265 31.7
QL02p095902 Quercus lobata HOM05D004960 ORTHO05D004696 3.8e-20 103.2 313 29.1
BcaB03g16662 Brassica carinata HOM05D004960 ORTHO05D004696 4.9e-20 102.8 328 29.3
BcaC04g22889 Brassica carinata HOM05D004960 ORTHO05D004696 4.9e-20 102.8 328 28.7
C09p14170 Brassica napus HOM05D004960 ORTHO05D004696 4.9e-20 102.8 328 28.7
Cpa.g.c29666.2 Carica papaya HOM05D004960 ORTHO05D004696 4.9e-20 102.8 319 27.9
TAR383G0345 Trochodendron aralioides HOM05D004960 ORTHO05D004696 4.9e-20 102.8 299 27.4
Carub.0003s3296 Capsella rubella HOM05D004960 ORTHO05D004696 6.4e-20 102.4 318 28.9
Ciclev10008947m.g Citrus clementina HOM05D004960 ORTHO05D004696 1.9e-19 100.9 307 29.0
A09p12040 Brassica napus HOM05D004960 ORTHO05D004696 2.4e-19 100.5 328 28.7
BraA09t36847Z Brassica rapa HOM05D004960 ORTHO05D004696 2.4e-19 100.5 328 28.7
HanXRQChr03g0068481 Helianthus annuus HOM05D004960 ORTHO05D004696 2.4e-19 100.5 326 30.1
BcaB07g31648 Brassica carinata HOM05D004960 ORTHO05D004696 3.2e-19 100.1 328 28.7
THA.LOC104803513 Tarenaya hassleriana HOM05D004960 ORTHO05D004696 3.2e-19 100.1 312 28.5
Thecc.09G163000 Theobroma cacao HOM05D004960 ORTHO05D004696 3.2e-19 100.1 240 29.2
AT2G18690 Arabidopsis thaliana HOM05D004960 ORTHO05D004696 4.2e-19 99.8 318 28.6
AL3G52080 Arabidopsis lyrata HOM05D004960 ORTHO05D004696 5.4e-19 99.4 313 29.1
Ciclev10008957m.g Citrus clementina HOM05D004960 ORTHO05D004696 1.2e-18 98.2 307 28.3
BraA07t27990Z Brassica rapa HOM05D004960 ORTHO05D004696 1.6e-18 97.8 333 29.7
Oeu024903.1 Olea europaea HOM05D004960 ORTHO05D004696 1.6e-18 97.8 303 28.4
BolC9t55984H Brassica oleracea HOM05D004960 ORTHO05D004696 2.7e-18 97.1 332 30.4
Dinv41299 Davidia involucrata HOM05D004960 ORTHO05D004696 2.7e-18 97.1 324 24.4
CSS0034998 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 3.5e-18 96.7 316 27.8
CARHR109270 Cardamine hirsuta HOM05D004960 ORTHO05D004696 3.5e-18 96.7 308 27.9
TAR383G0614 Trochodendron aralioides HOM05D004960 ORTHO05D004696 3.5e-18 96.7 297 27.3
CSS0022952 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 4.6e-18 96.3 314 30.9
CSS0038346 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 6.0e-18 95.9 314 30.9
Oeu043380.1 Olea europaea HOM05D004960 ORTHO05D004696 6.0e-18 95.9 236 30.9
TWI34G0908 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 6.0e-18 95.9 233 27.5
HanXRQChr03g0068521 Helianthus annuus HOM05D004960 ORTHO05D004696 1.3e-17 94.7 268 34.0
Manes.14G147200 Manihot esculenta HOM05D004960 ORTHO05D004696 2.3e-17 94.0 324 26.5
C04p38300 Brassica napus HOM05D004960 ORTHO05D004696 8.7e-17 92.0 324 28.7
Cpa.g.sc75.10 Carica papaya HOM05D004960 ORTHO05D004696 8.7e-17 92.0 285 31.9
Lsat_1_v5_gn_7_52700 Lactuca sativa HOM05D004960 ORTHO05D004696 8.7e-17 92.0 319 24.8
Hma1.2p1_0921F.1_g236770 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 1.1e-16 91.7 288 25.7
Hma1.2p1_0921F.1_g236794 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 1.1e-16 91.7 288 25.7
BolC7t40796H Brassica oleracea HOM05D004960 ORTHO05D004696 2.5e-16 90.5 259 27.8
BraA04t16256Z Brassica rapa HOM05D004960 ORTHO05D004696 3.3e-16 90.1 324 28.1
HPP92_010759 Vanilla planifolia HOM05D004960 ORTHO05D004696 3.3e-16 90.1 303 24.1
C07p04050 Brassica napus HOM05D004960 ORTHO05D004696 5.6e-16 89.4 285 26.7
TWI32G0132 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 5.6e-16 89.4 322 24.8
TAR626G1223 Trochodendron aralioides HOM05D004960 ORTHO05D004696 5.6e-16 89.4 291 24.1
Oeu037992.1 Olea europaea HOM05D004960 ORTHO05D004696 7.3e-16 89.0 326 27.6
Rhsim01G0010300 Rhododendron simsii HOM05D004960 ORTHO05D004696 7.3e-16 89.0 303 28.4
Thhalv10022778m.g Eutrema salsugineum HOM05D004960 ORTHO05D004696 9.6e-16 88.6 321 28.0
Nn1g04315 Nelumbo nucifera HOM05D004960 ORTHO05D004696 1.3e-15 88.2 241 29.9
A07p01900 Brassica napus HOM05D004960 ORTHO05D004696 1.6e-15 87.8 266 30.5
Prupe.1G095700 Prunus persica HOM05D004960 ORTHO05D004696 1.6e-15 87.8 321 28.0
Rhsim01G0010200 Rhododendron simsii HOM05D004960 ORTHO05D004696 1.6e-15 87.8 306 28.4
Sp3g32170 Schrenkiella parvula HOM05D004960 ORTHO05D004696 2.8e-15 87.0 298 27.5
CSS0049948 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 3.6e-15 86.7 319 26.6
CSS0018327 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 6.2e-15 85.9 297 25.6
Potri.010G250300 Populus trichocarpa HOM05D004960 ORTHO05D004696 6.2e-15 85.9 306 27.5
Duzib168G0188 Durio zibethinus HOM05D004960 ORTHO05D004696 4.0e-14 83.2 308 24.4
A04p05570 Brassica napus HOM05D004960 ORTHO05D004696 1.2e-13 81.6 323 28.8
Migut.K00271 Erythranthe guttata HOM05D004960 ORTHO05D004696 2.0e-13 80.9 338 25.1
Cc06_g13860 Coffea canephora HOM05D004960 ORTHO05D004696 3.4e-13 80.1 308 26.0
Solyc07g006420.1 Solanum lycopersicum HOM05D004960 ORTHO05D004696 3.4e-13 80.1 306 25.2
Actinidia38795 Actinidia chinensis HOM05D004960 ORTHO05D004696 5.8e-13 79.3 296 31.8
MBI14_g30699_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 5.8e-13 79.3 294 25.5
BcaC02g09087 Brassica carinata HOM05D004960 ORTHO05D004696 9.9e-13 78.6 320 26.9
PGSC0003DMG400034810 Solanum tuberosum HOM05D004960 ORTHO05D004696 1.3e-12 78.2 265 26.8
Migut.J01407 Erythranthe guttata HOM05D004960 ORTHO05D004696 1.7e-12 77.8 308 23.7
Actinidia35989 Actinidia chinensis HOM05D004960 ORTHO05D004696 8.4e-12 75.5 310 23.9
Migut.K00270 Erythranthe guttata HOM05D004960 ORTHO05D004696 1.9e-11 74.3 302 25.2
PGR084G0002 Punica granatum HOM05D004960 ORTHO05D004696 2.4e-11 73.9 314 26.1
PGR142G0218 Punica granatum HOM05D004960 ORTHO05D004696 2.4e-11 73.9 314 26.1
Carub.0003s3294 Capsella rubella HOM05D004960 ORTHO05D004696 5.4e-11 72.8 291 27.1
Migut.J01430 Erythranthe guttata HOM05D004960 ORTHO05D004696 9.3e-11 72.0 315 26.3
Prupe.1G095800 Prunus persica HOM05D004960 ORTHO05D004696 9.3e-11 72.0 127 37.0
Atru.chr12.164 Acer truncatum HOM05D004960 ORTHO05D004696 1.2e-10 71.6 276 27.9
MBI14_g30691_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 2.1e-10 70.9 324 25.9
HanXRQChr03g0074171 Helianthus annuus HOM05D012567 ORTHO05D004696 2.7e-10 70.5 295 27.8
Lsat_1_v5_gn_8_65701 Lactuca sativa HOM05D004960 ORTHO05D004696 2.7e-10 70.5 300 23.3
AT2G18680 Arabidopsis thaliana HOM05D004960 ORTHO05D004696 3.5e-10 70.1 289 26.3
Actinidia38650 Actinidia chinensis HOM05D004960 ORTHO05D004696 4.6e-10 69.7 323 23.5
HanXRQChr03g0074111 Helianthus annuus HOM05D012567 ORTHO05D004696 1.3e-09 68.2 296 27.7
HanXRQChr03g0074151 Helianthus annuus HOM05D012567 ORTHO05D004696 1.3e-09 68.2 296 27.7
Manes.13G066000 Manihot esculenta HOM05D004960 ORTHO05D004696 2.3e-09 67.4 304 26.0
PSO063G2425 Papaver somniferum HOM05D004960 ORTHO05D004696 2.3e-09 67.4 298 32.6
CSS0019658 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 3.0e-09 67.0 310 27.7
Actinidia35990 Actinidia chinensis HOM05D004960 ORTHO05D004696 6.7e-09 65.9 118 33.1
Eucgr.F04013 Eucalyptus grandis HOM05D004960 ORTHO05D004696 6.7e-09 65.9 315 26.0
HanXRQChr06g0167601 Helianthus annuus HOM05D012567 ORTHO05D004696 8.7e-09 65.5 287 26.5
VMungo0647G0121 Vigna mungo HOM05D001062 ORTHO05D000884 8.7e-09 65.5 305 22.3
Eucgr.J03153 Eucalyptus grandis HOM05D004960 ORTHO05D004696 1.9e-08 64.3 304 26.0
MBI06_g27436_MAGBIO Magnolia biondii HOM05D001062 ORTHO05D000884 1.9e-08 64.3 290 29.3
MBI14_g30697_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 2.5e-08 63.9 291 24.7
MELO3C010587.2 Cucumis melo HOM05D001062 ORTHO05D000884 5.6e-08 62.8 310 23.5
MBI14_g08066_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009942 5.6e-08 62.8 263 26.2
TWI12G0641 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 5.6e-08 62.8 314 25.5
ECA240G0411 Erigeron canadensis HOM05D004960 ORTHO05D004696 7.4e-08 62.4 304 23.7
CANSAT21G2281 Cannabis sativa HOM05D001062 ORTHO05D000884 1.6e-07 61.2 307 23.1
ECA240G1251 Erigeron canadensis HOM05D012567 ORTHO05D004696 1.6e-07 61.2 229 25.3
CANSAT21G1631 Cannabis sativa HOM05D001062 ORTHO05D000884 2.8e-07 60.5 307 22.8
CsaV3_6G035630 Cucumis sativus L. HOM05D001062 ORTHO05D000884 2.8e-07 60.5 310 22.6
TWI12G0285 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 3.7e-07 60.1 301 28.9
Gohir.D05G242200 Gossypium hirsutum HOM05D001062 ORTHO05D000884 4.8e-07 59.7 305 23.0
Sed0002264 Sechium edule HOM05D001062 ORTHO05D000884 8.1e-07 58.9 316 25.3
Lsat_1_v5_gn_7_52661 Lactuca sativa HOM05D012567 ORTHO05D004696 1.1e-06 58.5 294 24.8
Duzib093G0038 Durio zibethinus HOM05D001062 ORTHO05D000884 1.8e-06 57.8 299 22.4
Glyma.14G118500 Glycine max HOM05D001062 ORTHO05D000884 1.8e-06 57.8 294 22.1
Lalb_Chr25g0281621 Lupinus albus HOM05D001062 ORTHO05D000884 1.8e-06 57.8 296 24.3
Dinv42772 Davidia involucrata HOM05D004960 ORTHO05D004696 3.1e-06 57.0 358 22.3
Glyma.11G178501 Glycine max HOM05D001062 ORTHO05D000884 3.1e-06 57.0 295 22.7
Glyma.13G037000 Glycine max HOM05D001062 ORTHO05D000884 3.1e-06 57.0 295 22.7
SGA_v2.0_scaffold69G23316 Striga asiatica HOM05D004960 ORTHO05D004696 3.1e-06 57.0 310 25.8
Thecc.08G139400 Theobroma cacao HOM05D001062 ORTHO05D000884 3.1e-06 57.0 303 23.8
Duzib116G0744 Durio zibethinus HOM05D001062 ORTHO05D000884 4.0e-06 56.6 293 23.5
Oeu037995.1 Olea europaea HOM05D004960 ORTHO05D004696 4.0e-06 56.6 225 24.4
SalBow6G0476 Salvia bowleyana HOM05D004960 ORTHO05D004696 5.3e-06 56.2 308 26.6
TAR626G1398 Trochodendron aralioides HOM05D004960 ORTHO05D004696 6.9e-06 55.8 250 26.8
ECA246G2375 Erigeron canadensis HOM05D001062 ORTHO05D000884 9.0e-06 55.5 215 25.1
Sed0003865 Sechium edule HOM05D001062 ORTHO05D000884 9.0e-06 55.5 312 22.1


User provided reference genes

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