Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 0.0e+00 1556.2 779 100.0
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 0.0e+00 1135.6 779 73.2
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 0.0e+00 1131.7 782 72.8
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 0.0e+00 1126.3 779 72.8
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1126.3 778 72.6
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1126.3 778 72.6
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 0.0e+00 1106.3 779 71.4
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 0.0e+00 1092.8 780 70.8
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 0.0e+00 1088.2 780 70.4
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 0.0e+00 1087.4 782 70.8
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 0.0e+00 1086.6 780 70.5
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 0.0e+00 1085.1 780 70.5
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 0.0e+00 1079.3 780 70.3
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 0.0e+00 1077.8 782 70.8
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 0.0e+00 1075.8 780 70.6
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 0.0e+00 1075.1 776 70.1
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 8.0e-311 1070.1 781 70.3
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 1.2e-309 1066.2 880 62.6
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 3.4e-309 1064.7 778 70.2
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 1.3e-308 1062.8 798 68.7
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 1.3e-308 1062.8 791 69.5
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 1.1e-307 1059.7 779 68.5
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 5.4e-307 1057.4 781 69.0
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 4.6e-306 1054.3 777 69.0
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 4.6e-306 1054.3 779 68.2
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 5.1e-305 1050.8 782 68.8
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 6.7e-305 1050.4 780 68.8
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 1.6e-303 1045.8 781 67.6
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 3.7e-303 1044.6 784 68.5
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 1.8e-302 1042.3 770 67.9
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 6.9e-302 1040.4 781 68.8
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 1.2e-301 1039.6 779 67.0
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 1.5e-301 1039.3 785 67.6
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 2.0e-301 1038.9 779 68.2
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 2.6e-301 1038.5 791 67.0
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 1.0e-300 1036.6 779 67.7
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 6.4e-300 1033.9 779 66.9
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 1.9e-299 1032.3 780 67.9
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 6.0e-298 1027.3 779 66.9
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 2.8e-295 1018.5 783 66.0
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 4.8e-295 1017.7 780 67.7
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 4.8e-295 1017.7 872 63.0
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 1.3e-292 1009.6 775 65.3
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.9e-292 1008.4 779 67.1
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 5.5e-291 1004.2 808 63.9
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 1.2e-290 1003.0 839 62.7
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 4.6e-290 1001.1 778 66.1
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 6.1e-290 1000.7 778 63.5
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 6.1e-290 1000.7 779 64.3
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 3.0e-289 998.4 882 60.7
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 1.3e-287 993.0 773 63.4
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 1.3e-287 993.0 754 67.5
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 4.8e-287 991.1 780 65.8
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 1.1e-286 989.9 773 63.5
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 4.1e-286 988.0 782 62.8
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 9.0e-286 986.9 780 63.8
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 2.0e-285 985.7 778 64.5
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 2.6e-285 985.3 785 63.7
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 5.9e-285 984.2 777 63.7
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 2.2e-284 982.2 779 65.0
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 2.2e-284 982.2 782 65.1
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 2.2e-284 982.2 780 64.7
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 3.8e-284 981.5 777 64.2
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 3.8e-284 981.5 780 65.5
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 2.1e-282 975.7 779 64.7
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 3.6e-282 974.9 779 65.0
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 7.9e-282 973.8 780 64.6
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 3.9e-281 971.5 773 62.9
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 1.5e-280 969.5 780 63.1
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 3.3e-280 968.4 773 62.9
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 1.3e-279 966.5 773 62.9
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 5.3e-278 961.1 799 61.1
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 1.2e-274 949.9 784 63.9
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 4.7e-274 948.0 769 62.0
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 1.8e-273 946.0 773 62.1
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 3.9e-273 944.9 788 63.6
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 1.7e-271 939.5 765 62.0
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 2.2e-271 939.1 741 64.6
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 5.3e-270 934.5 782 62.5
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 6.5e-268 927.5 783 60.8
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 9.4e-267 923.7 723 65.0
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 9.1e-262 907.1 782 59.3
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 6.5e-260 901.0 747 60.9
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 1.4e-257 893.3 793 59.1
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 3.7e-255 885.2 779 59.9
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 6.3e-239 831.2 781 57.4
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 6.4e-223 778.1 773 52.8
Ca_18486_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 3.0e-204 716.1 541 68.2
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 5.1e-204 715.3 539 68.3
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 3.4e-200 702.6 481 74.2
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 7.9e-197 691.4 500 68.4
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 2.0e-192 676.8 777 49.7
AL7G32520 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 1.0e-175 621.3 596 55.4
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.4e-174 617.5 425 70.6
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 2.2e-159 567.0 794 41.7
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 7.2e-150 535.4 784 40.3
Eucgr.D02667 Eucalyptus grandis HOM05D004656 ORTHO05D005404 9.4e-142 508.4 405 63.5
unitig_8.g3352 Utricularia gibba HOM05D004656 ORTHO05D005404 2.3e-140 503.8 506 54.0
Hma1.2p1_1241F.1_g269840 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 1.1e-134 485.0 507 55.0
AagrBONN_evm.TU.Sc2ySwM_117.1500 Anthoceros agrestis HOM05D004656 ORTHO05D005404 1.1e-118 431.8 746 36.5
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 6.4e-106 389.4 839 31.3
BcaC09g51334 Brassica carinata HOM05D004656 ORTHO05D005404 2.2e-98 364.4 445 48.1
Hund23621 Selenicereus undatus HOM05D004656 ORTHO05D005404 2.7e-96 357.5 378 50.3
BcaC09g51339 Brassica carinata HOM05D004656 ORTHO05D005404 1.5e-94 351.7 450 45.8
Eucgr.E03552 Eucalyptus grandis HOM05D004656 ORTHO05D005404 7.3e-86 322.8 257 64.6
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 2.4e-81 307.8 191 73.8
BcaC09g51337 Brassica carinata HOM05D004656 ORTHO05D005404 4.6e-80 303.5 382 45.8
arahy.Tifrunner.gnm1.ann1.QWV34J Arachis hypogaea HOM05D004656 ORTHO05D005404 5.1e-79 300.1 265 60.0
SEGI_33901 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 4.9e-74 283.5 393 40.2
Eucgr.C00026 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.3e-69 268.9 179 72.6
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 2.4e-68 264.6 220 59.1
SMO119G0264 Selaginella moellendorffii HOM05D004656 ORTHO05D005404 1.1e-54 219.2 771 26.1
QL02p031126 Quercus lobata HOM05D004656 ORTHO05D005404 9.4e-41 172.9 178 56.7
PRCOL_00000091 Prasinoderma coloniale HOM05D004656 ORTHO05D005404 4.8e-37 160.6 489 25.4
RcHm_v2.0_Chr5g0006431 Rosa chinensis HOM05D004656 ORTHO05D005404 4.1e-36 157.5 323 35.9
SHI02121 Sapria himalayana HOM05D004656 ORTHO05D005404 7.7e-35 153.3 258 37.6
Os02g0785900 Oryza sativa ssp. japonica HOM05D004656 ORTHO05D005404 1.0e-34 152.9 104 65.4
SHI02118 Sapria himalayana HOM05D004656 ORTHO05D005404 2.9e-34 151.4 226 41.2
SEGI_08767 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 2.7e-32 144.8 165 49.1
Cre12.g556650 Chlamydomonas reinhardtii HOM05D004656 ORTHO05D005404 8.0e-32 143.3 517 23.8
MCO05G135 Micromonas commoda HOM05D004656 ORTHO05D005404 2.0e-30 138.7 502 24.7
CSS0025603 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.4e-28 131.7 86 74.4
Hund23620 Selenicereus undatus HOM05D004656 ORTHO05D005404 4.1e-28 131.0 86 70.9
TAR369G0180 Trochodendron aralioides HOM05D004656 ORTHO05D005404 7.0e-28 130.2 87 72.4
Zm00001eb125490 Zea mays HOM05D004656 ORTHO05D005404 9.1e-28 129.8 116 55.2
EL10Ac6g14063 Beta vulgaris HOM05D004656 ORTHO05D005404 1.6e-27 129.0 89 71.9
Zm00001eb384090 Zea mays HOM05D004656 ORTHO05D005404 2.0e-27 128.6 109 57.8
EL10Ac9g22460 Beta vulgaris HOM05D004656 ORTHO05D005404 1.7e-26 125.6 85 71.8
CSS0042439 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.7e-26 125.6 86 72.1
CSS0005991 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.5e-25 121.7 105 57.1
CSS0038861 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 7.2e-25 120.2 86 69.8
Eucgr.E01958 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.1e-24 118.6 92 63.0
CSS0002071 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.4e-23 115.9 83 69.9
Hma1.2p1_0144F.1_g064710 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 6.8e-23 113.6 62 85.5
Eucgr.C00045 Eucalyptus grandis HOM05D004656 ORTHO05D005404 7.5e-22 110.2 79 67.1
Zm00001eb374130 Zea mays HOM05D004656 ORTHO05D005404 2.8e-21 108.2 61 75.4
Haze_06207 Corylus avellana HOM05D004656 ORTHO05D005404 9.1e-20 103.2 62 80.6
SGA_v2.0_scaffold159G37668 Striga asiatica HOM05D004656 ORTHO05D005404 2.3e-18 98.6 132 43.2
MELO3C008912.2 Cucumis melo HOM05D004656 ORTHO05D005404 4.2e-17 94.4 55 80.0
Hma1.2p1_1241F.1_g269830 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 9.5e-17 93.2 62 74.2
EL10Ac3g05965 Beta vulgaris HOM05D004656 ORTHO05D005404 1.2e-16 92.8 54 81.5
SHI02114 Sapria himalayana HOM05D004656 ORTHO05D005404 8.0e-16 90.1 69 58.0
MELO3C032683.2 Cucumis melo HOM05D004656 ORTHO05D005404 4.0e-15 87.8 52 73.1
Zm00001eb266270 Zea mays HOM05D004656 ORTHO05D005404 1.7e-13 82.4 80 52.5
CSS0023832 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 6.3e-13 80.5 86 53.5
Eucgr.C00011 Eucalyptus grandis HOM05D004656 ORTHO05D005404 5.4e-12 77.4 55 67.3
Eucgr.E03560 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.0e-11 75.5 55 65.5
CSS0033314 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 3.5e-11 74.7 70 61.4
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 3.5e-11 74.7 70 61.4
Eucgr.E03557 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.9e-10 71.6 61 57.4
Eucgr.L00388 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.6e-08 65.9 60 58.3
CSS0036547 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.1e-08 65.5 86 46.5
SHI02119 Sapria himalayana HOM05D004656 ORTHO05D005404 3.6e-08 64.7 47 68.1
Actinidia29288 Actinidia chinensis HOM05D004656 ORTHO05D005404 1.4e-07 62.8 31 90.3
SHI02115 Sapria himalayana HOM05D004656 ORTHO05D005404 2.6e-06 58.5 31 77.4


User provided reference genes

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