Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G03081 Aquilegia oxysepala HOM05D007223 ORTHO05D008932 1.7e-35 152.1 77 100.0
MD13G1253600 Malus domestica HOM05D007223 ORTHO05D008932 1.3e-22 109.4 71 76.1
Prupe.1G085900 Prunus persica HOM05D007223 ORTHO05D008932 3.7e-22 107.8 72 76.4
CSS0040203 Camellia sinensis var. sinensis HOM05D007223 ORTHO05D008932 5.3e-21 104.0 69 73.9
Dinv41246 Davidia involucrata HOM05D007223 ORTHO05D008932 9.0e-21 103.2 71 74.6
Duzib168G2276 Durio zibethinus HOM05D007223 ORTHO05D008932 1.2e-20 102.8 69 73.9
CANSAT11G1503 Cannabis sativa HOM05D007223 ORTHO05D008932 2.0e-20 102.1 70 71.4
C02p14240 Brassica napus HOM05D007223 ORTHO05D008932 2.6e-20 101.7 70 74.3
BolC2t07548H Brassica oleracea HOM05D007223 ORTHO05D008932 2.6e-20 101.7 70 74.3
Eucgr.C02329 Eucalyptus grandis HOM05D007223 ORTHO05D008932 2.6e-20 101.7 69 72.5
Gorai.004G099600 Gossypium raimondii HOM05D007223 ORTHO05D008932 2.6e-20 101.7 67 73.1
A02p08480 Brassica napus HOM05D007223 ORTHO05D008932 3.4e-20 101.3 70 74.3
BraA02t05920Z Brassica rapa HOM05D007223 ORTHO05D008932 3.4e-20 101.3 70 74.3
TAR625G0650 Trochodendron aralioides HOM05D007223 ORTHO05D008932 4.5e-20 100.9 72 70.8
Gohir.A08G084300 Gossypium hirsutum HOM05D007223 ORTHO05D008932 5.9e-20 100.5 67 73.1
RcHm_v2.0_Chr4g0402441 Rosa chinensis HOM05D007223 ORTHO05D008932 7.6e-20 100.1 72 70.8
Dinv42721 Davidia involucrata HOM05D007223 ORTHO05D008932 1.0e-19 99.8 71 71.8
Dinv43380 Davidia involucrata HOM05D007223 ORTHO05D008932 1.0e-19 99.8 71 71.8
Nn8g40486 Nelumbo nucifera HOM05D007223 ORTHO05D008932 1.0e-19 99.8 72 70.8
CsaV3_2G008380 Cucumis sativus L. HOM05D007223 ORTHO05D008932 1.3e-19 99.4 69 65.2
Manes.14G153900 Manihot esculenta HOM05D007223 ORTHO05D008932 1.3e-19 99.4 72 69.4
Sp6g19140 Schrenkiella parvula HOM05D007223 ORTHO05D008932 1.3e-19 99.4 70 72.9
FvH4_4g08200 Fragaria vesca HOM05D007223 ORTHO05D008932 1.7e-19 99.0 70 72.9
FAN12G3200 Fragaria x ananassa HOM05D007223 ORTHO05D008932 1.7e-19 99.0 70 72.9
Gohir.D08G093900 Gossypium hirsutum HOM05D007223 ORTHO05D008932 1.7e-19 99.0 67 71.6
BcaB08g36098 Brassica carinata HOM05D007223 ORTHO05D008932 2.2e-19 98.6 70 72.9
Thhalv10015874m.g Eutrema salsugineum HOM05D007223 ORTHO05D008932 2.2e-19 98.6 70 72.9
Sed0023808 Sechium edule HOM05D007223 ORTHO05D008932 2.9e-19 98.2 70 67.1
GSVIVG01029215001 Vitis vinifera HOM05D007223 ORTHO05D008932 2.9e-19 98.2 72 70.8
CARHR271220 Cardamine hirsuta HOM05D007223 ORTHO05D008932 3.8e-19 97.8 70 72.9
Cpa.g.sc233.11 Carica papaya HOM05D007223 ORTHO05D008932 3.8e-19 97.8 71 66.2
FAN22G1200 Fragaria x ananassa HOM05D007223 ORTHO05D008932 3.8e-19 97.8 69 72.5
Thecc.09G177700 Theobroma cacao HOM05D007223 ORTHO05D008932 3.8e-19 97.8 72 68.1
PGR102G0813 Punica granatum HOM05D007223 ORTHO05D008932 5.0e-19 97.4 58 79.3
vmacro13125 Vaccinium macrocarpon HOM05D007223 ORTHO05D008932 5.0e-19 97.4 67 68.7
AL8G33400 Arabidopsis lyrata HOM05D007223 ORTHO05D008932 6.5e-19 97.1 70 71.4
Ciclev10010470m.g Citrus clementina HOM05D007223 ORTHO05D008932 6.5e-19 97.1 54 83.3
FAN07G1685 Fragaria x ananassa HOM05D007223 ORTHO05D008932 6.5e-19 97.1 52 88.5
FAN17G0481 Fragaria x ananassa HOM05D007223 ORTHO05D008932 6.5e-19 97.1 69 72.5
Potri.006G166900 Populus trichocarpa HOM05D007223 ORTHO05D008932 6.5e-19 97.1 62 74.2
Potri.018G092300 Populus trichocarpa HOM05D007223 ORTHO05D008932 6.5e-19 97.1 64 73.4
QL02p097776 Quercus lobata HOM05D007223 ORTHO05D008932 6.5e-19 97.1 72 72.2
TAR383G1061 Trochodendron aralioides HOM05D007223 ORTHO05D008932 6.5e-19 97.1 69 72.5
Atru.chr7.623 Acer truncatum HOM05D007223 ORTHO05D008932 1.1e-18 96.3 56 80.4
BcaC04g19969 Brassica carinata HOM05D007223 ORTHO05D008932 1.4e-18 95.9 70 71.4
AT5G57420 Arabidopsis thaliana HOM05D007223 ORTHO05D008932 1.9e-18 95.5 70 70.0
CiPaw.08G036200 Carya illinoinensis HOM05D007223 ORTHO05D008932 1.9e-18 95.5 67 71.6
Rhsim01G0004500 Rhododendron simsii HOM05D007223 ORTHO05D008932 1.9e-18 95.5 72 68.1
Cc06_g13230 Coffea canephora HOM05D007223 ORTHO05D008932 2.5e-18 95.1 69 71.0
Lalb_Chr07g0180471 Lupinus albus HOM05D007223 ORTHO05D008932 3.2e-18 94.7 75 65.3
Carub.0008s1794 Capsella rubella HOM05D007223 ORTHO05D008932 4.2e-18 94.4 70 70.0
ATR0580G272 Amborella trichopoda HOM05D007223 ORTHO05D008932 5.5e-18 94.0 67 71.6
Lj4g0003272 Lotus japonicus HOM05D007223 ORTHO05D008932 5.5e-18 94.0 67 74.6
Psat4g012360 Pisum sativum HOM05D007223 ORTHO05D008932 5.5e-18 94.0 67 71.6
THA.LOC104813522 Tarenaya hassleriana HOM05D007223 ORTHO05D008932 5.5e-18 94.0 69 69.6
Cfa013503 Carpinus fangiana HOM05D007223 ORTHO05D008932 7.2e-18 93.6 70 68.6
Medtr4g128070 Medicago truncatula HOM05D007223 ORTHO05D008932 7.2e-18 93.6 70 71.4
Hma1.2p1_1025F.1_g249310 Hydrangea macrophylla HOM05D007223 ORTHO05D008932 9.3e-18 93.2 71 66.2
Peaxi162Scf00231g00621 Petunia axillaris HOM05D007223 ORTHO05D008932 1.6e-17 92.4 72 63.9
Actinidia04146 Actinidia chinensis HOM05D007223 ORTHO05D008932 2.7e-17 91.7 71 66.2
MSTRG.6217 Avicennia marina HOM05D007223 ORTHO05D008932 2.7e-17 91.7 74 63.5
Lalb_Chr13g0300221 Lupinus albus HOM05D007223 ORTHO05D008932 2.7e-17 91.7 68 69.1
Phvul.003G145600 Phaseolus vulgaris HOM05D007223 ORTHO05D008932 2.7e-17 91.7 74 67.6
TPR.G5371 Trifolium pratense HOM05D007223 ORTHO05D008932 2.7e-17 91.7 67 70.1
PSO782G5105 Papaver somniferum HOM05D007223 ORTHO05D008932 3.6e-17 91.3 83 63.9
SGA_v2.0_scaffold69G23253 Striga asiatica HOM05D007223 ORTHO05D008932 3.6e-17 91.3 54 79.6
Lsat_1_v5_gn_5_85421 Lactuca sativa HOM05D007223 ORTHO05D008932 6.1e-17 90.5 66 65.2
Sabra06G0129600 Salix brachista HOM05D007223 ORTHO05D008932 6.1e-17 90.5 57 73.7
Oeu042168.1 Olea europaea HOM05D007223 ORTHO05D008932 7.9e-17 90.1 70 65.7
BcaB05g22346 Brassica carinata HOM05D007223 ORTHO05D008932 1.0e-16 89.7 70 68.6
HanXRQChr10g0308641 Helianthus annuus HOM05D007223 ORTHO05D008932 1.0e-16 89.7 52 78.8
Duzib170G0975 Durio zibethinus HOM05D007223 ORTHO05D008932 1.8e-16 89.0 66 65.2
MBI16_g39833_MAGBIO Magnolia biondii HOM05D007223 ORTHO05D008932 3.0e-16 88.2 58 70.7
AUR62033216 Chenopodium quinoa HOM05D007223 ORTHO05D008932 3.9e-16 87.8 52 78.8
DCAR_014699 Daucus carota HOM05D007223 ORTHO05D008932 3.9e-16 87.8 53 77.4
THA.LOC104817792 Tarenaya hassleriana HOM05D007223 ORTHO05D008932 3.9e-16 87.8 66 68.2
SalBow6G4081 Salvia bowleyana HOM05D007223 ORTHO05D008932 5.1e-16 87.4 70 61.4
arahy.Tifrunner.gnm1.ann1.LBMC6N Arachis hypogaea HOM05D007223 ORTHO05D008932 6.7e-16 87.0 54 77.8
ECA234G1236 Erigeron canadensis HOM05D007223 ORTHO05D008932 6.7e-16 87.0 51 80.4
Solyc07g019450.3 Solanum lycopersicum HOM05D007223 ORTHO05D008932 6.7e-16 87.0 72 59.7
arahy.Tifrunner.gnm1.ann1.1E3WXN Arachis hypogaea HOM05D007223 ORTHO05D008932 8.7e-16 86.7 52 76.9
MSTRG.19707 Avicennia marina HOM05D007223 ORTHO05D008932 1.1e-15 86.3 72 62.5
Os04g0653300 Oryza sativa ssp. japonica HOM05D007223 ORTHO05D008932 1.5e-15 85.9 56 75.0
HPP92_017414 Vanilla planifolia HOM05D007223 ORTHO05D008932 5.7e-15 84.0 52 73.1
SEGI_39293 Sequoiadendron giganteum HOM05D007223 ORTHO05D008932 2.2e-14 82.0 59 66.1
SEGI_19995 Sequoiadendron giganteum HOM05D007223 ORTHO05D008932 3.8e-11 71.2 45 73.3
MBI14_g17369_MAGBIO Magnolia biondii HOM05D003252 ORTHO05D003640 3.2e-10 68.2 70 48.6
COL.COLO4_37700 Corchorus olitorius HOM05D007223 ORTHO05D008932 9.4e-10 66.6 47 68.1
BcaC03g14153 Brassica carinata HOM05D007223 ORTHO05D008932 2.1e-09 65.5 47 70.2
Mapoly0013s0010 Marchantia polymorpha HOM05D007223 ORTHO05D008932 6.1e-09 63.9 52 63.5
Aa31LG3G13310 Aethionema arabicum HOM05D007223 ORTHO05D008932 1.4e-08 62.8 47 68.1
PGSC0003DMG400043142 Solanum tuberosum HOM05D007223 ORTHO05D008932 1.8e-08 62.4 48 60.4
Glyma.20G083900 Glycine max HOM05D007223 ORTHO05D008932 2.3e-08 62.0 60 55.0
ClCG11G012160 Citrullus lanatus HOM05D007223 ORTHO05D008932 3.0e-08 61.6 48 58.3
Oeu004200.1 Olea europaea HOM05D007223 ORTHO05D008932 3.0e-08 61.6 47 68.1
AagrBONN_evm.TU.Sc2ySwM_117.1187 Anthoceros agrestis HOM05D007223 ORTHO05D008932 5.1e-08 60.8 48 58.3
MELO3C004026.2 Cucumis melo HOM05D007223 ORTHO05D008932 5.1e-08 60.8 47 57.4
Migut.J01482 Erythranthe guttata HOM05D007223 ORTHO05D008932 5.1e-08 60.8 76 46.1
C09p49290 Brassica napus HOM05D007223 ORTHO05D008932 8.8e-08 60.1 62 53.2
BolC9t57780H Brassica oleracea HOM05D007223 ORTHO05D008932 8.8e-08 60.1 62 53.2
BraA10t43566Z Brassica rapa HOM05D007223 ORTHO05D008932 1.1e-07 59.7 49 63.3
Ca_21226_v3 Cicer arietinum L. HOM05D007223 ORTHO05D008932 1.5e-07 59.3 47 63.8
Lj5C7T1 Lonicera japonica HOM05D007223 ORTHO05D008932 1.5e-07 59.3 48 60.4
Lj5C590T0 Lonicera japonica HOM05D007223 ORTHO05D008932 2.0e-07 58.9 48 60.4
A10p14870 Brassica napus HOM05D007223 ORTHO05D008932 2.6e-07 58.5 46 65.2
Haze_22095 Corylus avellana HOM05D007223 ORTHO05D008932 2.6e-07 58.5 47 63.8
EL10Ac8g18282 Beta vulgaris HOM05D007223 ORTHO05D008932 7.4e-07 57.0 52 53.8
CBR_g39692 Chara braunii HOM05D000117 ORTHO05D000070 1.7e-06 55.8 38 63.2
CBR_g19697 Chara braunii HOM05D000117 ORTHO05D008932 6.3e-06 53.9 38 57.9


User provided reference genes

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