Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 7.5e-189 663.7 333 100.0
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 3.5e-138 495.4 335 70.1
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 2.3e-137 492.7 335 69.9
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 1.1e-136 490.3 334 68.6
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.5e-136 490.0 337 69.7
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 2.5e-136 489.2 337 68.8
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 2.1e-135 486.1 335 70.4
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 8.1e-135 484.2 335 67.8
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 8.1e-135 484.2 335 67.8
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 1.4e-134 483.4 335 67.5
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 1.8e-134 483.0 337 69.4
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 3.1e-134 482.3 335 68.7
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 3.1e-134 482.3 335 68.7
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 4.0e-134 481.9 336 67.9
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 4.0e-134 481.9 335 67.8
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 4.0e-134 481.9 337 70.0
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 5.3e-134 481.5 337 68.5
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 1.2e-133 480.3 332 68.7
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 1.5e-133 479.9 335 68.1
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 2.0e-133 479.6 337 67.7
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 4.5e-133 478.4 335 67.5
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 7.6e-133 477.6 337 67.4
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 3.8e-132 475.3 336 66.4
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 4.9e-132 474.9 335 67.8
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 1.1e-131 473.8 334 66.8
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 1.1e-131 473.8 338 66.9
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 1.4e-131 473.4 337 67.1
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 3.2e-131 472.2 335 66.9
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 3.2e-131 472.2 332 67.5
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 5.5e-131 471.5 336 66.4
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 7.1e-131 471.1 335 67.2
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 9.3e-131 470.7 337 66.8
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 1.2e-130 470.3 336 66.4
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 1.2e-130 470.3 337 65.9
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 1.6e-130 469.9 336 65.5
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 2.1e-130 469.5 337 67.7
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 2.1e-130 469.5 337 67.7
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 2.1e-130 469.5 337 66.8
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 3.5e-130 468.8 337 66.5
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 3.5e-130 468.8 337 67.1
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 4.6e-130 468.4 323 68.7
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 6.0e-130 468.0 337 66.8
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 7.9e-130 467.6 335 67.5
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 1.0e-129 467.2 337 65.9
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 1.8e-129 466.5 337 66.2
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 3.0e-129 465.7 326 67.5
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 5.1e-129 464.9 344 66.9
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 1.1e-128 463.8 337 66.5
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 1.1e-128 463.8 334 67.4
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 1.1e-128 463.8 330 68.2
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 4.3e-128 461.8 335 66.3
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 5.6e-128 461.5 336 65.2
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 5.6e-128 461.5 339 64.0
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 1.3e-127 460.3 335 65.4
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 4.8e-127 458.4 334 66.8
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 1.1e-126 457.2 335 64.2
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 1.1e-126 457.2 337 65.6
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 1.5e-125 453.4 334 65.9
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 2.6e-125 452.6 336 64.3
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 4.5e-125 451.8 336 65.2
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 4.5e-125 451.8 337 64.1
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 7.6e-125 451.1 327 65.1
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 1.0e-124 450.7 329 66.0
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 1.7e-124 449.9 337 64.1
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 1.7e-124 449.9 336 64.6
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 3.8e-124 448.7 335 65.4
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 3.8e-124 448.7 337 64.4
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 4.9e-124 448.4 337 66.5
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 8.4e-124 447.6 334 64.1
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.4e-123 446.8 336 66.1
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 1.4e-123 446.8 336 63.4
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 4.2e-123 445.3 331 65.9
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 1.2e-122 443.7 336 63.7
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 1.2e-122 443.7 326 64.7
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 1.2e-122 443.7 333 64.0
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 1.2e-122 443.7 335 64.8
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 2.7e-122 442.6 332 66.6
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 1.8e-121 439.9 333 61.9
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 3.0e-121 439.1 341 64.2
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 8.7e-121 437.6 335 62.4
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 1.5e-120 436.8 335 61.5
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 1.5e-120 436.8 326 64.4
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 2.5e-120 436.0 337 62.0
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 7.4e-120 434.5 329 61.4
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 9.7e-120 434.1 331 62.5
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 3.7e-119 432.2 339 61.9
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 1.4e-118 430.3 325 64.0
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 5.3e-118 428.3 332 61.7
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 4.5e-117 425.2 327 64.5
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 5.9e-117 424.9 335 60.3
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 1.7e-116 423.3 328 59.1
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 5.0e-116 421.8 312 64.7
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 6.5e-116 421.4 328 58.8
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 6.5e-116 421.4 332 60.8
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 3.2e-115 419.1 328 61.6
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 1.2e-114 417.2 327 60.2
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 1.6e-114 416.8 337 57.9
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 3.6e-114 415.6 331 61.6
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 2.3e-113 412.9 333 60.4
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 2.5e-112 409.5 333 61.0
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 7.4e-112 407.9 335 60.0
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 1.7e-111 406.8 335 56.7
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 1.3e-108 397.1 289 65.7
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 2.2e-108 396.4 325 56.3
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 2.2e-108 396.4 335 57.9
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 3.8e-108 395.6 327 59.6
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 3.8e-108 395.6 325 56.3
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 3.2e-107 392.5 335 55.2
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 3.2e-107 392.5 328 61.9
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 1.6e-106 390.2 328 58.2
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 2.1e-106 389.8 319 59.9
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 1.0e-105 387.5 329 57.8
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 1.8e-105 386.7 329 58.4
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 3.0e-105 386.0 379 52.2
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 2.6e-101 372.9 289 62.6
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 1.5e-96 357.1 314 54.1
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 2.2e-95 353.2 334 53.9
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 7.0e-94 348.2 251 63.7
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 2.5e-91 339.7 255 64.7
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 1.6e-85 320.5 374 44.1
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 1.0e-84 317.8 335 47.2
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 1.8e-81 307.0 344 50.9
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 2.0e-80 303.5 334 50.3
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 1.3e-79 300.8 274 52.6
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 1.8e-78 297.0 406 42.1
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 4.1e-78 295.8 206 68.0
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 1.6e-77 293.9 347 44.7
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 1.3e-76 290.8 214 65.0
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 2.1e-74 283.5 312 50.0
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 2.0e-72 276.9 306 50.0
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 2.5e-67 260.0 192 63.5
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 1.3e-63 247.7 249 51.0
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 2.0e-56 223.8 185 55.7
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 3.2e-54 216.5 184 56.0
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 9.9e-48 194.9 368 35.1
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 6.4e-47 192.2 155 60.0
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 1.6e-42 177.6 330 36.1
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 3.6e-42 176.4 246 42.3
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 2.9e-39 166.8 148 54.7
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 1.1e-38 164.9 135 59.3
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 5.4e-38 162.5 131 58.8
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 5.4e-38 162.5 131 58.8
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 2.7e-37 160.2 143 51.0
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 3.4e-24 116.7 152 42.1
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 7.6e-24 115.5 90 61.1
Glyma.02G261300 Glycine max HOM05D004754 ORTHO05D005566 1.3e-23 114.8 76 68.4
Psat5g233560 Pisum sativum HOM05D004754 ORTHO05D005566 2.3e-20 104.0 109 51.4
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 3.9e-20 103.2 274 28.8
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 1.3e-12 78.2 75 44.0
Lj6C128T1 Lonicera japonica HOM05D004754 ORTHO05D005566 1.9e-11 74.3 67 53.7
Potri.017G049500 Populus trichocarpa HOM05D004754 ORTHO05D005566 3.7e-10 70.1 38 78.9
Lju897C0T7 Lonicera japonica HOM05D004754 ORTHO05D005566 4.1e-09 66.6 67 50.7
HPP92_027352 Vanilla planifolia HOM05D004754 ORTHO05D005566 2.0e-08 64.3 71 46.5
Potri.006G050600 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.7e-07 61.2 51 62.7
Lju897C2T5 Lonicera japonica HOM05D004754 ORTHO05D005566 5.5e-06 56.2 58 44.8


User provided reference genes

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