Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 1.5e-171 606.3 352 100.0
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 5.7e-155 551.2 350 89.1
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 5.4e-153 544.7 350 84.6
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 5.0e-151 538.1 350 84.6
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 1.9e-150 536.2 350 81.4
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 1.9e-150 536.2 350 81.4
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 3.6e-149 531.9 350 83.1
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 5.2e-148 528.1 350 85.4
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 6.8e-148 527.7 350 83.1
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 4.4e-147 525.0 351 83.8
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 5.7e-147 524.6 350 81.1
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 1.3e-146 523.5 352 83.2
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 1.7e-146 523.1 352 84.9
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 2.2e-146 522.7 350 81.4
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 1.1e-145 520.4 350 84.0
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 3.2e-145 518.8 350 83.7
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 1.2e-144 516.9 351 78.3
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 2.0e-144 516.2 350 83.4
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 3.5e-144 515.4 350 81.7
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 1.0e-143 513.8 350 77.7
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 1.3e-143 513.5 350 81.4
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 5.0e-143 511.5 350 77.7
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 6.6e-143 511.1 350 82.0
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 8.6e-143 510.8 351 78.9
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 1.1e-142 510.4 351 83.5
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 1.9e-142 509.6 350 82.3
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 9.5e-142 507.3 351 77.5
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 1.2e-141 506.9 350 83.4
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 2.8e-141 505.8 352 81.2
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 3.6e-141 505.4 350 78.3
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 4.7e-141 505.0 350 76.9
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 6.2e-141 504.6 351 82.6
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 6.2e-141 504.6 352 80.4
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 6.2e-141 504.6 350 77.4
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 1.0e-140 503.8 352 77.8
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 1.4e-140 503.4 350 76.6
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 1.8e-140 503.1 350 82.6
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 1.8e-140 503.1 350 77.7
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 1.8e-140 503.1 350 76.6
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 2.3e-140 502.7 350 76.9
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 2.3e-140 502.7 349 81.4
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 8.9e-140 500.7 351 78.1
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 2.0e-139 499.6 346 77.2
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 3.4e-139 498.8 346 77.7
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 4.4e-139 498.4 352 78.1
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 5.8e-139 498.0 350 76.9
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 1.3e-138 496.9 351 80.6
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 2.2e-138 496.1 351 80.1
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 6.4e-138 494.6 351 77.2
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 6.4e-138 494.6 347 76.9
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 6.4e-138 494.6 350 75.1
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 8.3e-138 494.2 352 81.8
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 1.1e-137 493.8 352 81.2
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 1.4e-137 493.4 351 79.8
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 1.9e-137 493.0 350 75.7
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 2.4e-137 492.7 340 81.8
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 4.1e-137 491.9 351 76.9
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 4.1e-137 491.9 331 79.2
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 5.4e-137 491.5 350 75.7
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 5.4e-137 491.5 352 82.1
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 5.4e-137 491.5 352 82.1
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 2.0e-136 489.6 347 82.7
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 2.0e-136 489.6 350 78.6
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 3.5e-136 488.8 350 80.6
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 7.8e-136 487.6 351 80.1
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 1.0e-135 487.3 350 79.1
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 1.1e-134 483.8 350 77.1
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 1.5e-134 483.4 352 74.1
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 9.5e-134 480.7 350 77.7
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 1.6e-133 479.9 352 75.9
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 2.1e-133 479.6 350 77.7
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 8.1e-133 477.6 350 77.7
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 1.1e-132 477.2 350 74.3
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 1.1e-132 477.2 341 78.6
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 1.4e-132 476.9 350 77.4
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 5.2e-132 474.9 356 81.2
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 6.8e-132 474.6 330 80.3
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 6.8e-132 474.6 350 79.7
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 6.8e-132 474.6 352 79.8
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 8.9e-132 474.2 350 77.7
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 8.9e-132 474.2 327 85.6
Sabra18G0079100 Salix brachista HOM05D004327 ORTHO05D005032 2.0e-131 473.0 350 76.9
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 3.4e-131 472.2 329 80.2
Actinidia17317 Actinidia chinensis HOM05D004327 ORTHO05D005032 7.5e-131 471.1 349 79.7
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 9.8e-131 470.7 352 78.1
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 2.4e-129 466.1 331 75.5
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 5.4e-129 464.9 350 73.4
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 2.7e-128 462.6 352 79.3
ECA240G0157 Erigeron canadensis HOM05D004327 ORTHO05D005032 1.3e-127 460.3 334 75.7
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 1.5e-126 456.8 351 76.4
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 2.5e-126 456.1 353 77.3
ECA236G3505 Erigeron canadensis HOM05D004327 ORTHO05D005032 1.2e-125 453.8 342 74.9
Lsat_1_v5_gn_7_54620 Lactuca sativa HOM05D004327 ORTHO05D005032 4.7e-125 451.8 315 82.9
PGR142G4100 Punica granatum HOM05D004327 ORTHO05D005032 1.8e-124 449.9 350 71.1
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 1.5e-123 446.8 389 66.8
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 2.0e-123 446.4 345 76.5
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 2.9e-122 442.6 353 73.7
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 3.2e-121 439.1 352 70.2
Sed0007415 Sechium edule HOM05D004327 ORTHO05D005032 3.2e-121 439.1 312 74.4
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 6.0e-120 434.9 353 68.8
SHI02909 Sapria himalayana HOM05D004327 ORTHO05D005032 2.3e-119 433.0 345 72.2
Dinv41244 Davidia involucrata HOM05D004327 ORTHO05D005032 1.9e-118 429.9 283 84.8
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 3.3e-118 429.1 347 68.3
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 7.3e-118 427.9 330 69.7
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 1.6e-117 426.8 331 78.9
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 1.6e-117 426.8 351 70.7
AagrBONN_evm.TU.Sc2ySwM_117.785 Anthoceros agrestis HOM05D004327 ORTHO05D005032 4.7e-117 425.2 351 66.4
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 4.7e-117 425.2 331 75.2
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 8.1e-117 424.5 327 76.1
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 8.1e-117 424.5 327 76.1
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 8.1e-117 424.5 327 71.6
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 1.1e-116 424.1 352 74.1
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 5.2e-116 421.8 327 74.6
TAR636G3612 Trochodendron aralioides HOM05D000809 ORTHO05D001196 6.8e-116 421.4 284 87.0
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 1.2e-115 420.6 327 74.3
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 2.9e-114 416.0 340 67.9
Nitab4.5_0004572g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 1.4e-113 413.7 379 68.9
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 1.2e-112 410.6 351 66.7
Pp3c12_10100 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.6e-109 400.2 350 61.1
FAN17G0468 Fragaria x ananassa HOM05D004327 ORTHO05D005032 3.6e-109 399.1 330 70.0
Lj9A24G29 Lonicera japonica HOM05D004327 ORTHO05D005032 4.9e-106 388.7 268 77.6
Actinidia38633 Actinidia chinensis HOM05D004327 ORTHO05D005032 4.2e-105 385.6 291 72.5
Pp3c5_23860 Physcomitrium patens HOM05D004327 ORTHO05D005032 3.9e-103 379.0 350 58.6
Nitab4.5_0005945g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 3.3e-102 375.9 352 68.2
Pp3c3_22200 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.6e-101 373.6 350 57.7
SMO137G0257 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 4.8e-101 372.1 327 61.8
MELO3C004022.2 Cucumis melo HOM05D004327 ORTHO05D005032 1.1e-100 370.9 232 85.3
Actinidia27011 Actinidia chinensis HOM05D004327 ORTHO05D005032 4.5e-99 365.5 300 73.7
Mapoly0023s0050 Marchantia polymorpha HOM05D004327 ORTHO05D005032 1.3e-98 364.0 306 62.7
Pp3c10_16450 Physcomitrium patens HOM05D004327 ORTHO05D005032 8.4e-98 361.3 314 60.2
CBR_g34541 Chara braunii HOM05D004327 ORTHO05D005032 9.6e-94 347.8 333 56.8
CBR_g4121 Chara braunii HOM05D004327 ORTHO05D005032 1.4e-92 344.0 347 61.4
Duzib170G0255 Durio zibethinus HOM05D004327 ORTHO05D005032 1.8e-92 343.6 203 89.7
Pp3c16_10790 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.8e-92 343.6 356 54.2
Haze_22092 Corylus avellana HOM05D004327 ORTHO05D005032 6.5e-90 335.1 267 68.2
Actinidia02748 Actinidia chinensis HOM05D004327 ORTHO05D005032 9.3e-89 331.3 224 81.7
AT2G18876 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 1.3e-87 327.4 232 77.6
BcaB01g04461 Brassica carinata HOM05D004327 ORTHO05D005032 3.7e-85 319.3 286 67.8
BcaC01g06490 Brassica carinata HOM05D004327 ORTHO05D005032 7.2e-65 251.9 159 83.0
Aqoxy4G01695 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 4.7e-56 222.6 125 96.0
Oeu042171.1 Olea europaea HOM05D004327 ORTHO05D005032 3.2e-41 173.3 105 86.7
Haze_22093 Corylus avellana HOM05D004327 ORTHO05D005032 1.5e-38 164.5 106 82.1
FAN17G0800 Fragaria x ananassa HOM05D004327 ORTHO05D005032 1.8e-36 157.5 103 81.6
SEGI_01506 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 1.6e-35 154.5 102 78.4
Lj9A25T20 Lonicera japonica HOM05D004327 ORTHO05D005032 3.5e-35 153.3 97 80.4
BcaC01g06489 Brassica carinata HOM05D004327 ORTHO05D005032 7.7e-35 152.1 142 66.9
HanXRQChr08g0229701 Helianthus annuus HOM05D000502 ORTHO05D005032 1.3e-26 124.8 68 85.3
HanXRQChr09g0245491 Helianthus annuus HOM05D000502 ORTHO05D005032 1.3e-26 124.8 68 85.3
HanXRQChr13g0404041 Helianthus annuus HOM05D000502 ORTHO05D005032 1.9e-25 120.9 68 83.8
Aqoxy7G03035 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 4.0e-23 113.2 130 55.4
BraA02t05921Z Brassica rapa HOM05D004327 ORTHO05D005032 2.4e-20 104.0 81 70.4
Pp3c26_7180 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.7e-18 97.8 71 62.0
CiPaw.01G111100 Carya illinoinensis HOM05D002292 ORTHO05D005032 2.3e-18 97.4 58 93.1
SEGI_38031 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 6.6e-18 95.9 55 94.5
BcaB05g22345 Brassica carinata HOM05D004327 ORTHO05D005032 5.2e-15 86.3 93 51.6
C02p14250 Brassica napus HOM05D004327 ORTHO05D032179 1.2e-14 85.1 118 46.6
Pp3c25_9090 Physcomitrium patens HOM05D004327 ORTHO05D005032 4.1e-12 76.6 97 49.5
Oeu003512.1 Olea europaea HOM05D004327 ORTHO05D005032 7.1e-12 75.9 42 88.1
BcaC03g14154 Brassica carinata HOM05D004327 ORTHO05D032179 2.7e-11 73.9 95 47.4
Glyma.09G140000 Glycine max HOM05D004327 ORTHO05D005032 1.0e-10 72.0 73 49.3
COL.COLO4_28287 Corchorus olitorius HOM05D004327 ORTHO05D005032 2.5e-09 67.4 38 100.0
CiPaw.16G058000 Carya illinoinensis HOM05D002292 ORTHO05D003256 9.5e-09 65.5 38 94.7
BolC9t54329H Brassica oleracea HOM05D004327 ORTHO05D005032 2.6e-06 57.4 42 78.6


User provided reference genes

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