Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G03003 Aquilegia oxysepala HOM05D005764 ORTHO05D006600 4.9e-81 304.3 141 100.0
Aqoxy7G02956 Aquilegia oxysepala HOM05D005764 ORTHO05D006600 5.1e-22 108.2 80 58.8
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 6.5e-17 91.3 97 45.4
SalBow7G2732 Salvia bowleyana HOM05D005764 ORTHO05D006600 2.5e-16 89.4 93 44.1
PSO017G0179 Papaver somniferum HOM05D005764 ORTHO05D006600 9.4e-16 87.4 94 44.7
Dinv18433 Davidia involucrata HOM05D005764 ORTHO05D006600 2.1e-15 86.3 93 43.0
PGSC0003DMG400014245 Solanum tuberosum HOM05D005764 ORTHO05D006600 2.1e-15 86.3 92 42.4
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 4.7e-15 85.1 93 40.9
TAR362G1049 Trochodendron aralioides HOM05D005764 ORTHO05D006600 6.1e-15 84.7 88 45.5
QL04p061529 Quercus lobata HOM05D005764 ORTHO05D006600 1.4e-14 83.6 91 42.9
Actinidia25528 Actinidia chinensis HOM05D005764 ORTHO05D006600 1.8e-14 83.2 85 47.1
Thecc.03G139200 Theobroma cacao HOM05D005764 ORTHO05D006600 2.3e-14 82.8 88 40.9
ClCG02G014020 Citrullus lanatus HOM05D005764 ORTHO05D006600 3.0e-14 82.4 87 47.1
Solyc03g118280.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 3.0e-14 82.4 75 45.3
Sopen03g037190 Solanum pennellii HOM05D005764 ORTHO05D006600 3.0e-14 82.4 75 45.3
DCAR_021406 Daucus carota HOM05D005764 ORTHO05D006600 3.9e-14 82.0 93 38.7
Lj1C797T15 Lonicera japonica HOM05D005764 ORTHO05D006600 1.1e-13 80.5 80 48.8
Lj1C797T16 Lonicera japonica HOM05D005764 ORTHO05D006600 1.1e-13 80.5 80 48.8
Potri.015G105400 Populus trichocarpa HOM05D005764 ORTHO05D006600 1.1e-13 80.5 93 39.8
HPP92_025444 Vanilla planifolia HOM05D005764 ORTHO05D006600 1.5e-13 80.1 78 44.9
Ciclev10010938m.g Citrus clementina HOM05D005764 ORTHO05D006600 2.0e-13 79.7 77 46.8
Lj1A1039T30 Lonicera japonica HOM05D005764 ORTHO05D006600 2.0e-13 79.7 87 41.4
Manes.06G126050 Manihot esculenta HOM05D005764 ORTHO05D006600 2.0e-13 79.7 90 42.2
CsaV3_5G006140 Cucumis sativus L. HOM05D005764 ORTHO05D006600 2.6e-13 79.3 69 52.2
GSVIVG01030107001 Vitis vinifera HOM05D005764 ORTHO05D006600 4.4e-13 78.6 121 37.2
Actinidia07859 Actinidia chinensis HOM05D005764 ORTHO05D006600 5.7e-13 78.2 98 40.8
Dinv21306 Davidia involucrata HOM05D005764 ORTHO05D006600 7.4e-13 77.8 76 44.7
Sed0013038 Sechium edule HOM05D005764 ORTHO05D006600 7.4e-13 77.8 83 42.2
Rhsim06G0177300 Rhododendron simsii HOM05D005764 ORTHO05D006600 9.7e-13 77.4 99 38.4
DCAR_016460 Daucus carota HOM05D005764 ORTHO05D006600 1.3e-12 77.0 90 43.3
Nitab4.5_0000663g0160 Nicotiana tabacum HOM05D005764 ORTHO05D006600 1.7e-12 76.6 74 43.2
Nn7g38163 Nelumbo nucifera HOM05D005764 ORTHO05D006600 2.2e-12 76.3 88 40.9
Oeu005567.3 Olea europaea HOM05D005764 ORTHO05D006600 2.8e-12 75.9 77 48.1
Ah.11g046810 Amaranthus hybridus HOM05D005764 ORTHO05D006600 4.8e-12 75.1 87 41.4
MSTRG.22851 Avicennia marina HOM05D005764 ORTHO05D006600 1.1e-11 73.9 66 53.0
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 1.1e-11 73.9 70 45.7
QL11p027136 Quercus lobata HOM05D005764 ORTHO05D006600 1.1e-11 73.9 82 46.3
Nitab4.5_0008892g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 1.8e-11 73.2 74 41.9
CSS0031853 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 3.1e-11 72.4 92 37.0
CSS0045653 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 3.1e-11 72.4 92 37.0
SGA_v2.0_scaffold74G24732 Striga asiatica HOM05D005764 ORTHO05D006600 4.1e-11 72.0 67 47.8
CDE02G2785 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 5.3e-11 71.6 80 37.5
vmacro12075 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 5.3e-11 71.6 99 36.4
FvH4_5g09340 Fragaria vesca HOM05D005764 ORTHO05D006600 7.0e-11 71.2 61 50.8
FAN18G2453 Fragaria x ananassa HOM05D005764 ORTHO05D006600 7.0e-11 71.2 61 50.8
RcHm_v2.0_Chr7g0188811 Rosa chinensis HOM05D005764 ORTHO05D006600 7.0e-11 71.2 65 49.2
Nitab4.5_0005425g0010 Nicotiana tabacum HOM05D005764 ORTHO05D006600 9.1e-11 70.9 89 38.2
Atru.chr6.1906 Acer truncatum HOM05D005764 ORTHO05D006600 1.2e-10 70.5 95 34.7
MD06G1131900 Malus domestica HOM05D005764 ORTHO05D006600 1.6e-10 70.1 87 41.4
TWI14G0891 Tripterygium wilfordii HOM05D005764 ORTHO05D006600 2.0e-10 69.7 70 47.1
Cpa.g.sc211.34 Carica papaya HOM05D005764 ORTHO05D006600 3.5e-10 68.9 94 35.1
Cfa014216 Carpinus fangiana HOM05D005764 ORTHO05D006600 5.9e-10 68.2 76 40.8
MD14G1148300 Malus domestica HOM05D005764 ORTHO05D006600 5.9e-10 68.2 64 48.4
QL04p067861 Quercus lobata HOM05D005764 ORTHO05D006600 5.9e-10 68.2 94 39.4
EL10Ac5g11299 Beta vulgaris HOM05D005764 ORTHO05D006600 1.0e-09 67.4 65 46.2
Rhsim08G0196300 Rhododendron simsii HOM05D005764 ORTHO05D006600 1.0e-09 67.4 77 41.6
Thecc.01G197100 Theobroma cacao HOM05D005764 ORTHO05D006600 1.0e-09 67.4 77 40.3
Prupe.5G142900 Prunus persica HOM05D005764 ORTHO05D006600 1.3e-09 67.0 64 45.3
Gohir.D03G110000 Gossypium hirsutum HOM05D005764 ORTHO05D006600 1.7e-09 66.6 79 39.2
Nitab4.5_0006992g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 1.7e-09 66.6 74 39.2
Haze_12606 Corylus avellana HOM05D005764 ORTHO05D006600 2.2e-09 66.2 75 41.3
Haze_12617 Corylus avellana HOM05D005764 ORTHO05D006600 2.2e-09 66.2 75 41.3
Gorai.003G116400 Gossypium raimondii HOM05D005764 ORTHO05D006600 2.2e-09 66.2 78 38.5
Sc04g0000230 Simmondsia chinensis HOM05D005764 ORTHO05D006600 2.2e-09 66.2 83 41.0
Os07g0300200 Oryza sativa ssp. japonica HOM05D005764 ORTHO05D006600 3.8e-09 65.5 85 36.5
vmacro19173 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 3.8e-09 65.5 74 40.5
Atru.chr6.3404 Acer truncatum HOM05D005764 ORTHO05D006600 6.5e-09 64.7 78 39.7
CAN.G805.2 Capsicum annuum HOM05D005764 ORTHO05D006600 1.1e-08 63.9 99 35.4
Haze_07107 Corylus avellana HOM05D005764 ORTHO05D006600 1.1e-08 63.9 72 45.8
CSS0040489 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 1.5e-08 63.5 63 44.4
CiPaw.11G052700 Carya illinoinensis HOM05D005764 ORTHO05D006600 1.5e-08 63.5 82 36.6
Lsat_1_v5_gn_9_103540 Lactuca sativa HOM05D005764 ORTHO05D006600 1.5e-08 63.5 96 36.5
Dinv13731 Davidia involucrata HOM05D005764 ORTHO05D006600 1.9e-08 63.2 83 39.8
ECA240G4054 Erigeron canadensis HOM05D005764 ORTHO05D006600 1.9e-08 63.2 92 34.8
BcaB02g09611 Brassica carinata HOM05D005764 ORTHO05D006600 3.2e-08 62.4 117 34.2
Migut.I00614 Erythranthe guttata HOM05D005764 ORTHO05D006600 3.2e-08 62.4 60 48.3
ECA248G1009 Erigeron canadensis HOM05D005764 ORTHO05D006600 4.2e-08 62.0 57 50.9
vmacro19172 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 9.4e-08 60.8 78 35.9
AL8G38750 Arabidopsis lyrata HOM05D005764 ORTHO05D006600 2.1e-07 59.7 88 35.2
PGR042G2810 Punica granatum HOM05D005764 ORTHO05D006600 2.1e-07 59.7 62 43.5
Ciclev10014235m.g Citrus clementina HOM05D005764 ORTHO05D006600 3.6e-07 58.9 95 33.7
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 3.6e-07 58.9 94 31.9
HanXRQChr03g0075031 Helianthus annuus HOM05D005764 ORTHO05D006600 4.7e-07 58.5 90 36.7
CARHR275790 Cardamine hirsuta HOM05D005764 ORTHO05D006600 6.1e-07 58.2 86 36.0
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 1.8e-06 56.6 113 28.3
Medtr6g005000 Medicago truncatula HOM05D007358 ORTHO05D009117 1.8e-06 56.6 93 31.2
Atru.chr6.3407 Acer truncatum HOM05D005764 ORTHO05D006600 2.3e-06 56.2 62 40.3
Atru.chr6.3419 Acer truncatum HOM05D005764 ORTHO05D006600 2.3e-06 56.2 62 40.3
ECA246G3641 Erigeron canadensis HOM05D005906 ORTHO05D007359 2.3e-06 56.2 87 28.7
Peaxi162Scf00314g00530 Petunia axillaris HOM05D005764 ORTHO05D006600 2.3e-06 56.2 55 43.6
ATR0317G130 Amborella trichopoda HOM05D005764 ORTHO05D006600 3.0e-06 55.8 88 35.2
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 3.0e-06 55.8 94 27.7
PGSC0003DMG400017401 Solanum tuberosum HOM05D005764 ORTHO05D006600 3.0e-06 55.8 62 43.5
ATR0317G133 Amborella trichopoda HOM05D005764 ORTHO05D006600 4.0e-06 55.5 88 35.2
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 5.2e-06 55.1 86 33.7
CAN.G177.15 Capsicum annuum HOM05D005764 ORTHO05D006600 6.7e-06 54.7 60 40.0
AUR62009526 Chenopodium quinoa HOM05D005764 ORTHO05D006600 6.7e-06 54.7 63 44.4
AUR62034761 Chenopodium quinoa HOM05D005764 ORTHO05D006600 6.7e-06 54.7 62 45.2
AUR62041690 Chenopodium quinoa HOM05D005764 ORTHO05D006600 6.7e-06 54.7 62 45.2
TPR.G14066 Trifolium pratense HOM05D007358 ORTHO05D009117 6.7e-06 54.7 93 30.1
TAR633G1425 Trochodendron aralioides HOM05D005764 ORTHO05D006600 6.7e-06 54.7 61 44.3
HanXRQChr16g0498891 Helianthus annuus HOM05D005764 ORTHO05D006600 8.8e-06 54.3 71 38.0


User provided reference genes

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