Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G02885 Aquilegia oxysepala HOM05D002778 ORTHO05D003112 2.5e-25 117.9 54 100.0
Glyma.14G134900 Glycine max HOM05D002778 ORTHO05D003112 7.8e-11 69.7 47 70.2
Glyma.17G197800 Glycine max HOM05D002778 ORTHO05D003112 5.0e-10 67.0 31 83.9
Nn8g40687 Nelumbo nucifera HOM05D002778 ORTHO05D003112 6.6e-10 66.6 31 83.9
CSS0015542 Camellia sinensis var. sinensis HOM05D002778 ORTHO05D003112 8.6e-10 66.2 31 80.6
MBI16_g36963_MAGBIO Magnolia biondii HOM05D002778 ORTHO05D003112 1.5e-09 65.5 47 61.7
SalBow4G0971 Salvia bowleyana HOM05D002778 ORTHO05D003112 1.9e-09 65.1 31 77.4
CiPaw.08G020200 Carya illinoinensis HOM05D002778 ORTHO05D003112 2.5e-09 64.7 31 77.4
COL.COLO4_19026 Corchorus olitorius HOM05D002778 ORTHO05D003112 2.5e-09 64.7 31 77.4
Manes.03G079400 Manihot esculenta HOM05D002778 ORTHO05D003112 2.5e-09 64.7 31 77.4
TWI36G0848 Tripterygium wilfordii HOM05D002778 ORTHO05D003112 2.5e-09 64.7 31 77.4
Ciclev10010727m.g Citrus clementina HOM05D002778 ORTHO05D003112 3.3e-09 64.3 31 77.4
MD15G1107300 Malus domestica HOM05D002778 ORTHO05D003112 3.3e-09 64.3 31 80.6
Manes.15G098500 Manihot esculenta HOM05D002778 ORTHO05D003112 4.3e-09 63.9 31 74.2
PGR102G1539 Punica granatum HOM05D002778 ORTHO05D003112 4.3e-09 63.9 31 74.2
Hma1.2p1_1961F.1_g309120 Hydrangea macrophylla HOM05D002778 ORTHO05D003112 5.6e-09 63.5 31 74.2
Hma1.2p1_2332F.1_g320100 Hydrangea macrophylla HOM05D002778 ORTHO05D003112 5.6e-09 63.5 31 74.2
CAN.G809.78 Capsicum annuum HOM05D002778 ORTHO05D003112 7.3e-09 63.2 31 77.4
Cc01_g10000 Coffea canephora HOM05D002778 ORTHO05D003112 7.3e-09 63.2 31 77.4
HanXRQChr17g0538041 Helianthus annuus HOM05D002778 ORTHO05D003112 7.3e-09 63.2 31 74.2
Lsat_1_v5_gn_3_19520 Lactuca sativa HOM05D002778 ORTHO05D003112 9.5e-09 62.8 31 71.0
Peaxi162Scf00784g00034 Petunia axillaris HOM05D002778 ORTHO05D003112 9.5e-09 62.8 31 77.4
Solyc02g081560.1 Solanum lycopersicum HOM05D002778 ORTHO05D003112 9.5e-09 62.8 31 77.4
Cpa.g.sc23.21 Carica papaya HOM05D002778 ORTHO05D003112 1.2e-08 62.4 31 74.2
Haze_21753 Corylus avellana HOM05D002778 ORTHO05D003112 1.2e-08 62.4 31 74.2
Duzib187G1568 Durio zibethinus HOM05D002778 ORTHO05D003112 1.2e-08 62.4 31 74.2
Gohir.A05G063800 Gossypium hirsutum HOM05D002778 ORTHO05D003112 1.2e-08 62.4 31 74.2
Gohir.D05G066400 Gossypium hirsutum HOM05D002778 ORTHO05D003112 1.2e-08 62.4 31 74.2
Gorai.009G067200 Gossypium raimondii HOM05D002778 ORTHO05D003112 1.2e-08 62.4 31 74.2
CiPaw.07G212100 Carya illinoinensis HOM05D002778 ORTHO05D003112 2.1e-08 61.6 31 74.2
Phvul.001G059600 Phaseolus vulgaris HOM05D002778 ORTHO05D003112 2.1e-08 61.6 47 59.6
ATR0580G016 Amborella trichopoda HOM05D002778 ORTHO05D003112 2.8e-08 61.2 31 74.2
Potri.018G007300 Populus trichocarpa HOM05D002778 ORTHO05D003112 2.8e-08 61.2 31 71.0
QL12p025213 Quercus lobata HOM05D002778 ORTHO05D003112 2.8e-08 61.2 31 74.2
MELO3C011187.2 Cucumis melo HOM05D002778 ORTHO05D003112 3.6e-08 60.8 31 71.0
Lalb_Chr08g0243521 Lupinus albus HOM05D002778 ORTHO05D003112 3.6e-08 60.8 33 66.7
Medtr3g108890 Medicago truncatula HOM05D002778 ORTHO05D003112 3.6e-08 60.8 31 74.2
Sed0006590 Sechium edule HOM05D002778 ORTHO05D003112 3.6e-08 60.8 31 71.0
Aa31LG3G16440 Aethionema arabicum HOM05D002778 ORTHO05D003112 4.7e-08 60.5 31 71.0
AT5G10695 Arabidopsis thaliana HOM05D002778 ORTHO05D003112 4.7e-08 60.5 32 65.6
CARHR202640 Cardamine hirsuta HOM05D002778 ORTHO05D003112 4.7e-08 60.5 32 65.6
Sc09g0010140 Simmondsia chinensis HOM05D002778 ORTHO05D003112 4.7e-08 60.5 28 78.6
Eucgr.C02016 Eucalyptus grandis HOM05D002778 ORTHO05D003112 6.1e-08 60.1 31 71.0
Eucgr.J02702 Eucalyptus grandis HOM05D002778 ORTHO05D003112 6.1e-08 60.1 31 71.0
RcHm_v2.0_Chr6g0305041 Rosa chinensis HOM05D002778 ORTHO05D003112 8.0e-08 59.7 31 71.0
Sed0003600 Sechium edule HOM05D002778 ORTHO05D003112 1.0e-07 59.3 31 64.5
Thecc.09G007900 Theobroma cacao HOM05D002778 ORTHO05D003112 1.0e-07 59.3 31 71.0
Carub.0006s0916 Capsella rubella HOM05D002778 ORTHO05D003112 1.4e-07 58.9 32 62.5
Eucgr.C02015 Eucalyptus grandis HOM05D002778 ORTHO05D003112 1.4e-07 58.9 31 67.7
Manes.09G005702 Manihot esculenta HOM05D002778 ORTHO05D003112 1.8e-07 58.5 28 82.1
Nitab4.5_0000584g0040 Nicotiana tabacum HOM05D002778 ORTHO05D003112 1.8e-07 58.5 31 71.0
TPR.G12466 Trifolium pratense HOM05D002778 ORTHO05D003112 1.8e-07 58.5 31 67.7
Thhalv10016058m.g Eutrema salsugineum HOM05D002778 ORTHO05D003112 2.3e-07 58.2 31 64.5
Potri.018G140500 Populus trichocarpa HOM05D002778 ORTHO05D003112 2.3e-07 58.2 37 67.6
AL8G33050 Arabidopsis lyrata HOM05D002778 ORTHO05D003112 3.1e-07 57.8 32 71.9
AT5G57123 Arabidopsis thaliana HOM05D002778 ORTHO05D003112 3.1e-07 57.8 32 71.9
BcaB08g36001 Brassica carinata HOM05D002778 ORTHO05D003112 3.1e-07 57.8 32 71.9
BcaC04g20009 Brassica carinata HOM05D002778 ORTHO05D003112 3.1e-07 57.8 32 71.9
C09p48860 Brassica napus HOM05D002778 ORTHO05D003112 3.1e-07 57.8 32 71.9
BolC9t57733H Brassica oleracea HOM05D002778 ORTHO05D003112 3.1e-07 57.8 32 71.9
Carub.0008s1763 Capsella rubella HOM05D002778 ORTHO05D003112 3.1e-07 57.8 32 71.9
Duzib168G0124 Durio zibethinus HOM05D002778 ORTHO05D003112 3.1e-07 57.8 31 71.0
Manes.14G162900 Manihot esculenta HOM05D002778 ORTHO05D003112 4.0e-07 57.4 28 78.6
Nn8g40694 Nelumbo nucifera HOM05D002778 ORTHO05D003112 5.2e-07 57.0 31 67.7
BcaB01g04445 Brassica carinata HOM05D002778 ORTHO05D003112 6.8e-07 56.6 32 68.8
BcaC01g06467 Brassica carinata HOM05D002778 ORTHO05D003112 6.8e-07 56.6 32 68.8
BcaC01g06468 Brassica carinata HOM05D002778 ORTHO05D003112 6.8e-07 56.6 32 68.8
BcaNung05127 Brassica carinata HOM05D002778 ORTHO05D003112 6.8e-07 56.6 32 68.8
A03p12970 Brassica napus HOM05D002778 ORTHO05D003112 6.8e-07 56.6 32 68.8
A10p14450 Brassica napus HOM05D002778 ORTHO05D003112 6.8e-07 56.6 32 68.8
C03p15140 Brassica napus HOM05D002778 ORTHO05D003112 6.8e-07 56.6 32 68.8
BraA03t10605Z Brassica rapa HOM05D002778 ORTHO05D003112 6.8e-07 56.6 32 68.8
BraA10t43536Z Brassica rapa HOM05D002778 ORTHO05D003112 6.8e-07 56.6 32 68.8
Glyma.04G075800 Glycine max HOM05D002778 ORTHO05D003112 6.8e-07 56.6 31 67.7
Potri.006G073400 Populus trichocarpa HOM05D002778 ORTHO05D003112 6.8e-07 56.6 35 65.7
Prupe.1G459600 Prunus persica HOM05D002778 ORTHO05D003112 6.8e-07 56.6 31 67.7
CARHR270900 Cardamine hirsuta HOM05D002778 ORTHO05D003112 8.9e-07 56.2 32 68.8
Thhalv10015218m.g Eutrema salsugineum HOM05D002778 ORTHO05D003112 8.9e-07 56.2 32 68.8
MD16G1246800 Malus domestica HOM05D002778 ORTHO05D003112 8.9e-07 56.2 47 53.2
Phvul.009G101600 Phaseolus vulgaris HOM05D002778 ORTHO05D003112 8.9e-07 56.2 30 66.7
TWI75G0683 Tripterygium wilfordii HOM05D002778 ORTHO05D003112 1.5e-06 55.5 37 62.2
Lj1g0023199 Lotus japonicus HOM05D002778 ORTHO05D003112 2.0e-06 55.1 31 64.5
Prupe.1G073400 Prunus persica HOM05D002778 ORTHO05D003112 2.6e-06 54.7 31 67.7
Thecc.09G191000 Theobroma cacao HOM05D002778 ORTHO05D003112 2.6e-06 54.7 28 71.4
BolC3t13955H Brassica oleracea HOM05D002778 ORTHO05D003112 3.4e-06 54.3 32 65.6
PSO063G5619 Papaver somniferum HOM05D002778 ORTHO05D003112 3.4e-06 54.3 31 64.5
PSO170G3710 Papaver somniferum HOM05D002778 ORTHO05D003112 3.4e-06 54.3 31 64.5
RcHm_v2.0_Chr4g0399141 Rosa chinensis HOM05D002778 ORTHO05D003112 5.8e-06 53.5 31 64.5
Sopen02g011850 Solanum pennellii HOM05D000288 ORTHO05D003112 5.8e-06 53.5 31 64.5
FvH4_4g07010 Fragaria vesca HOM05D002778 ORTHO05D003112 7.5e-06 53.1 31 61.3
Manes.06G018000 Manihot esculenta HOM05D002778 ORTHO05D003112 7.5e-06 53.1 28 71.4
PSO063G3231 Papaver somniferum HOM05D002778 ORTHO05D003112 7.5e-06 53.1 31 61.3
PSO170G0913 Papaver somniferum HOM05D002778 ORTHO05D003112 7.5e-06 53.1 31 61.3
THA.LOC104813502 Tarenaya hassleriana HOM05D002778 ORTHO05D003112 7.5e-06 53.1 28 71.4
TWI31G1116 Tripterygium wilfordii HOM05D002778 ORTHO05D003112 7.5e-06 53.1 37 59.5
CiPaw.08G031900 Carya illinoinensis HOM05D002778 ORTHO05D003112 9.8e-06 52.8 31 64.5


User provided reference genes

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