Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 5.8e-89 330.9 167 100.0
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 4.6e-70 268.1 166 78.9
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 1.7e-69 266.2 168 77.4
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 2.3e-69 265.8 167 77.2
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 1.5e-68 263.1 163 78.5
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 3.3e-68 261.9 167 78.4
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 3.3e-68 261.9 166 77.1
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 4.3e-68 261.5 170 75.9
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 1.6e-67 259.6 167 76.6
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 2.8e-67 258.8 166 73.5
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 2.8e-67 258.8 166 75.3
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 3.6e-67 258.5 167 76.0
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 3.6e-67 258.5 166 74.1
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 1.1e-66 256.9 167 75.4
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 2.4e-66 255.8 152 80.3
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 2.4e-66 255.8 167 73.7
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 5.3e-66 254.6 167 74.9
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 5.3e-66 254.6 167 74.9
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 5.3e-66 254.6 167 74.9
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 5.3e-66 254.6 167 74.9
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 5.3e-66 254.6 166 72.9
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 6.9e-66 254.2 166 76.5
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 6.9e-66 254.2 167 75.4
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.2e-65 253.4 167 74.9
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 2.0e-65 252.7 166 75.9
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 2.0e-65 252.7 164 76.8
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 2.0e-65 252.7 167 74.3
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 2.6e-65 252.3 164 75.0
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 3.4e-65 251.9 164 76.8
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 3.4e-65 251.9 164 75.0
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 5.8e-65 251.1 167 71.9
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 7.6e-65 250.8 164 75.0
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 7.6e-65 250.8 166 72.9
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 7.6e-65 250.8 164 75.6
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 1.3e-64 250.0 167 73.7
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 1.7e-64 249.6 166 72.9
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 1.7e-64 249.6 167 72.5
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 2.9e-64 248.8 167 71.9
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 3.8e-64 248.4 167 71.9
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 4.9e-64 248.1 167 71.3
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 4.9e-64 248.1 167 71.9
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 6.4e-64 247.7 166 72.3
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 6.4e-64 247.7 167 71.9
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 8.4e-64 247.3 166 72.9
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 1.4e-63 246.5 167 71.3
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 1.9e-63 246.1 166 73.5
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 5.4e-63 244.6 167 72.5
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 5.4e-63 244.6 166 74.7
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 5.4e-63 244.6 193 66.8
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 1.6e-62 243.0 169 71.0
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 1.6e-62 243.0 166 75.3
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 6.0e-62 241.1 167 70.7
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 6.0e-62 241.1 167 70.7
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 6.0e-62 241.1 167 70.7
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 6.0e-62 241.1 167 71.3
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 6.0e-62 241.1 167 70.7
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 1.3e-61 240.0 167 70.1
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 1.8e-61 239.6 167 70.7
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 2.3e-61 239.2 169 70.4
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 3.0e-61 238.8 166 69.3
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 3.9e-61 238.4 169 69.8
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 6.7e-61 237.7 167 68.9
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 1.1e-60 236.9 163 71.2
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 1.9e-60 236.1 164 68.3
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 3.3e-60 235.3 167 68.3
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 5.6e-60 234.6 191 63.4
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 1.6e-59 233.0 166 69.9
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 2.1e-59 232.6 168 67.3
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 2.8e-59 232.3 167 67.1
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 6.2e-59 231.1 167 67.7
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 8.1e-59 230.7 159 70.4
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 1.1e-58 230.3 162 68.5
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 3.1e-58 228.8 166 63.3
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 1.5e-57 226.5 149 73.2
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 4.5e-57 224.9 154 71.4
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 4.5e-57 224.9 204 58.8
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 4.5e-57 224.9 163 67.5
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 7.6e-57 224.2 189 60.3
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 1.3e-56 223.4 167 68.3
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 1.1e-55 220.3 137 78.1
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 5.5e-55 218.0 137 74.5
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 5.5e-55 218.0 190 60.0
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 5.5e-55 218.0 167 60.5
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 6.0e-54 214.5 140 72.9
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 1.4e-50 203.4 163 61.3
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 2.4e-50 202.6 165 62.4
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 3.1e-50 202.2 128 74.2
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 5.3e-50 201.4 118 80.5
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 2.0e-49 199.5 136 68.4
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 2.0e-49 199.5 174 59.8
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 2.6e-49 199.1 122 79.5
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 3.4e-49 198.7 158 60.1
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 4.5e-49 198.4 159 58.5
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 5.8e-49 198.0 153 61.4
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 5.8e-49 198.0 159 58.5
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 7.6e-49 197.6 159 57.9
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 7.6e-49 197.6 159 57.9
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 1.0e-48 197.2 158 59.5
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 1.3e-48 196.8 127 68.5
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 8.4e-48 194.1 168 57.1
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 1.9e-47 193.0 158 58.9
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 1.9e-47 193.0 159 57.2
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 4.2e-47 191.8 116 81.0
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 7.1e-47 191.0 149 57.7
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 2.1e-46 189.5 127 70.1
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 3.5e-46 188.7 139 66.2
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 1.8e-45 186.4 136 63.2
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 1.8e-45 186.4 116 77.6
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 5.7e-44 181.4 159 54.1
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 3.7e-43 178.7 136 58.1
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 6.3e-43 177.9 162 53.7
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.8e-42 176.4 162 53.1
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 3.1e-42 175.6 164 49.4
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 9.0e-42 174.1 162 53.7
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 9.0e-42 174.1 162 51.9
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 2.0e-41 172.9 116 71.6
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 3.4e-41 172.2 116 73.3
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 1.4e-39 166.8 116 72.4
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 1.0e-37 160.6 138 60.9
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 4.8e-35 151.8 118 61.0
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 2.4e-34 149.4 167 47.9
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 5.3e-34 148.3 113 63.7
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 1.0e-32 144.1 111 67.6
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 1.3e-32 143.7 167 46.7
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 1.4e-31 140.2 163 46.0
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.9e-31 139.8 154 49.4
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 9.4e-31 137.5 132 53.0
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.4e-29 133.7 123 50.4
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 3.0e-29 132.5 128 57.8
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 2.0e-28 129.8 142 48.6
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 2.2e-27 126.3 75 78.7
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 8.2e-27 124.4 128 57.0
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 4.1e-26 122.1 95 64.2
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 6.9e-26 121.3 118 48.3
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 1.2e-22 110.5 70 72.9
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 4.7e-22 108.6 167 41.9
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 4.7e-22 108.6 103 47.6
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 3.3e-20 102.4 145 40.7
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 5.7e-20 101.7 71 64.8
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 6.3e-19 98.2 74 58.1
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 6.3e-19 98.2 74 58.1
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 6.3e-19 98.2 74 58.1
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 5.9e-17 91.7 59 71.2
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.9e-16 89.4 94 52.1
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 2.9e-16 89.4 52 73.1
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 7.2e-15 84.7 167 35.3
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 1.2e-14 84.0 75 61.3
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 2.7e-14 82.8 75 58.7
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 1.0e-13 80.9 58 63.8
Atru.chr5.208 Acer truncatum HOM05D004832 ORTHO05D005821 3.7e-11 72.4 54 74.1
Atru.chr5.565 Acer truncatum HOM05D004832 ORTHO05D005821 5.3e-10 68.6 50 68.0
Atru.chr5.584 Acer truncatum HOM05D004832 ORTHO05D005821 7.0e-10 68.2 49 67.3
vmacro13464 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 1.2e-09 67.4 48 70.8
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 4.5e-09 65.5 54 55.6
vmacro05238 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 2.7e-06 56.2 40 72.5


User provided reference genes

Program Settings