Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 2.7e-77 292.0 153 100.0
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.2e-55 219.2 138 73.9
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 1.1e-54 216.9 134 73.9
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 1.1e-54 216.9 138 72.5
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 3.2e-54 215.3 134 73.1
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 7.2e-54 214.2 134 73.1
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 2.1e-53 212.6 136 72.1
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 4.7e-53 211.5 134 73.1
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 4.7e-53 211.5 134 71.6
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 4.7e-53 211.5 134 71.6
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 8.0e-53 210.7 134 72.4
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 1.8e-52 209.5 136 73.5
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 1.8e-52 209.5 134 72.4
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 1.8e-52 209.5 134 70.1
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 3.0e-52 208.8 133 70.7
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 5.2e-52 208.0 137 71.5
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 1.2e-51 206.8 134 73.9
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 3.4e-51 205.3 137 70.8
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 1.3e-50 203.4 133 69.9
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 1.7e-50 203.0 137 68.6
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 2.2e-50 202.6 137 68.6
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 1.1e-49 200.3 137 70.1
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 1.4e-49 199.9 136 66.9
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 4.1e-49 198.4 135 70.4
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 1.2e-48 196.8 134 68.7
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 1.2e-48 196.8 152 64.5
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 1.6e-48 196.4 151 60.9
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 1.6e-48 196.4 137 67.9
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 2.0e-48 196.1 137 66.4
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 2.7e-48 195.7 134 68.7
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 2.7e-48 195.7 151 62.9
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 3.5e-48 195.3 152 63.2
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 4.5e-48 194.9 152 62.5
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 1.0e-47 193.7 152 64.5
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 1.3e-47 193.4 133 68.4
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 2.2e-47 192.6 146 64.4
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 2.2e-47 192.6 137 65.7
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 2.2e-47 192.6 151 62.9
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 2.2e-47 192.6 136 66.2
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 2.9e-47 192.2 133 66.9
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 2.9e-47 192.2 133 66.9
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 3.8e-47 191.8 133 68.4
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 4.2e-46 188.3 135 65.2
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 7.2e-46 187.6 133 66.2
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 7.2e-46 187.6 134 64.9
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 9.4e-46 187.2 136 64.0
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 1.2e-45 186.8 137 66.4
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 1.2e-45 186.8 133 65.4
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 1.6e-45 186.4 152 61.2
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 2.1e-45 186.0 134 62.7
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 3.6e-45 185.3 134 64.9
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 4.7e-45 184.9 134 66.4
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 6.1e-45 184.5 130 70.8
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 1.0e-44 183.7 136 62.5
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 1.0e-44 183.7 134 64.2
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 1.4e-44 183.3 134 64.9
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.3e-44 182.6 130 70.0
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 2.3e-44 182.6 127 63.0
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 3.0e-44 182.2 134 68.7
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 5.2e-44 181.4 130 70.0
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 5.2e-44 181.4 133 63.9
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 6.8e-44 181.0 130 69.2
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 8.8e-44 180.6 132 64.4
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 8.8e-44 180.6 135 62.2
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 8.8e-44 180.6 137 58.4
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 1.5e-43 179.9 130 66.9
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 1.5e-43 179.9 130 66.9
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 1.5e-43 179.9 122 72.1
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 1.5e-43 179.9 133 63.9
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 2.0e-43 179.5 133 63.9
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 2.6e-43 179.1 135 61.5
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 2.6e-43 179.1 132 63.6
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 2.6e-43 179.1 137 57.7
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 2.6e-43 179.1 133 63.9
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 4.4e-43 178.3 134 64.2
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 5.7e-43 177.9 131 64.1
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 5.7e-43 177.9 133 63.2
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 5.7e-43 177.9 133 63.2
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 7.5e-43 177.6 131 64.1
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 7.5e-43 177.6 130 66.2
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 9.8e-43 177.2 135 61.5
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 1.3e-42 176.8 132 62.1
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 2.2e-42 176.0 130 63.8
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 2.2e-42 176.0 130 63.8
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 2.2e-42 176.0 130 63.8
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 8.3e-42 174.1 133 60.9
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 1.4e-41 173.3 122 63.9
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 1.8e-41 172.9 130 63.8
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 1.8e-41 172.9 130 63.8
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 2.4e-41 172.6 132 62.9
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 3.1e-41 172.2 152 55.9
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 3.1e-41 172.2 133 60.9
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 3.1e-41 172.2 134 59.0
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 4.1e-41 171.8 130 63.1
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 4.1e-41 171.8 136 62.5
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 9.2e-41 170.6 130 62.3
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 1.2e-40 170.2 132 62.9
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 1.2e-40 170.2 131 61.1
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 1.2e-40 170.2 131 61.1
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 1.2e-40 170.2 131 61.1
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 1.2e-40 170.2 149 57.0
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 1.6e-40 169.9 131 61.1
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 2.7e-40 169.1 133 60.9
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 5.9e-40 167.9 132 60.6
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 1.7e-39 166.4 134 59.0
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 2.9e-39 165.6 127 61.4
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 2.9e-39 165.6 131 61.1
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 8.6e-39 164.1 121 63.6
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 1.1e-38 163.7 126 65.1
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 1.9e-38 162.9 128 62.5
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 4.3e-38 161.8 134 60.4
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 1.2e-37 160.2 125 64.0
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 1.2e-37 160.2 134 54.5
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 2.8e-37 159.1 207 44.4
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 2.3e-36 156.0 122 63.1
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 4.4e-35 151.8 119 60.5
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 9.8e-35 150.6 120 60.0
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 3.7e-34 148.7 120 59.2
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 5.4e-33 144.8 214 38.3
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 7.0e-33 144.4 113 63.7
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 5.0e-31 138.3 84 77.4
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 1.9e-30 136.3 136 47.8
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 3.3e-30 135.6 136 47.8
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 1.6e-29 133.3 109 58.7
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 3.6e-29 132.1 134 47.8
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 4.4e-27 125.2 97 60.8
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 9.8e-27 124.0 86 70.9
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 1.1e-25 120.6 134 44.8
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 3.2e-25 119.0 82 72.0
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 2.0e-24 116.3 83 65.1
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 5.0e-23 111.7 132 41.7
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 2.8e-21 105.9 85 61.2
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 8.9e-20 100.9 174 38.5
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 3.4e-19 99.0 130 37.7
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 3.4e-19 99.0 130 38.5
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 5.8e-19 98.2 83 57.8
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 1.3e-15 87.0 74 55.4
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 1.2e-13 80.5 86 45.3
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 5.2e-12 75.1 139 30.2
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 6.8e-12 74.7 140 32.9
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 3.4e-11 72.4 49 63.3
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 4.9e-10 68.6 108 34.3
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.7e-07 60.1 50 56.0
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.7e-07 60.1 50 56.0


User provided reference genes

Program Settings