Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 1.7e-35 152.1 75 100.0
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 4.4e-20 100.9 73 71.2
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 7.4e-20 100.1 76 69.7
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 7.4e-20 100.1 76 69.7
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 7.4e-20 100.1 74 70.3
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 1.3e-19 99.4 76 69.7
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 1.3e-19 99.4 73 68.5
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 1.3e-19 99.4 73 67.1
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 1.7e-19 99.0 73 65.8
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 2.8e-19 98.2 73 68.5
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 3.7e-19 97.8 73 67.1
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 3.7e-19 97.8 73 67.1
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 3.7e-19 97.8 73 69.9
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 4.8e-19 97.4 73 68.5
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 6.3e-19 97.1 73 65.8
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 1.1e-18 96.3 73 68.5
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 1.1e-18 96.3 73 63.0
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.4e-18 95.9 73 64.4
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 1.8e-18 95.5 73 67.1
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 1.8e-18 95.5 73 67.1
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 2.4e-18 95.1 73 63.0
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 2.4e-18 95.1 73 63.0
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 2.4e-18 95.1 73 65.8
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 2.4e-18 95.1 73 69.9
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 3.1e-18 94.7 77 68.8
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 3.1e-18 94.7 73 63.0
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 4.1e-18 94.4 68 66.2
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 5.3e-18 94.0 74 67.6
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 5.3e-18 94.0 73 61.6
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 5.3e-18 94.0 76 65.8
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 5.3e-18 94.0 73 67.1
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 9.1e-18 93.2 73 68.5
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 9.1e-18 93.2 76 64.5
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 1.2e-17 92.8 76 65.8
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.2e-17 92.8 76 64.5
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 2.6e-17 91.7 76 65.8
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 2.6e-17 91.7 73 67.1
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 2.6e-17 91.7 73 67.1
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 2.6e-17 91.7 74 66.2
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 4.5e-17 90.9 71 67.6
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 4.5e-17 90.9 73 64.4
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 5.9e-17 90.5 73 63.0
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.3e-16 89.4 76 61.8
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 2.9e-16 88.2 74 63.5
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 3.8e-16 87.8 74 62.2
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 3.8e-16 87.8 73 64.4
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 8.5e-16 86.7 73 61.6
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 8.5e-16 86.7 77 62.3
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 8.5e-16 86.7 77 62.3
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 8.5e-16 86.7 73 58.9
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 8.5e-16 86.7 73 60.3
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 1.1e-15 86.3 58 67.2
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 1.1e-15 86.3 73 60.3
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 1.5e-15 85.9 61 60.7
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 1.5e-15 85.9 61 60.7
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 1.5e-15 85.9 68 61.8
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 1.9e-15 85.5 67 62.7
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.9e-15 85.5 77 61.0
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.9e-15 85.5 77 61.0
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 1.9e-15 85.5 77 63.6
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 2.5e-15 85.1 73 64.4
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 2.5e-15 85.1 68 60.3
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 3.2e-15 84.7 67 59.7
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 3.2e-15 84.7 77 62.3
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 3.2e-15 84.7 77 61.0
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 3.2e-15 84.7 77 61.0
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 4.2e-15 84.3 68 57.4
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 4.2e-15 84.3 78 61.5
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 4.2e-15 84.3 73 60.3
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 7.2e-15 83.6 67 61.2
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 7.2e-15 83.6 67 61.2
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 7.2e-15 83.6 67 61.2
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 7.2e-15 83.6 67 61.2
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 7.2e-15 83.6 67 61.2
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 7.2e-15 83.6 73 57.5
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 7.2e-15 83.6 71 60.6
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 9.4e-15 83.2 67 61.2
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 9.4e-15 83.2 69 58.0
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 9.4e-15 83.2 79 58.2
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 9.4e-15 83.2 68 60.3
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 9.4e-15 83.2 70 60.0
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 1.2e-14 82.8 67 59.7
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 1.6e-14 82.4 67 59.7
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 1.6e-14 82.4 71 62.0
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 1.6e-14 82.4 77 58.4
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 1.6e-14 82.4 70 62.9
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 2.1e-14 82.0 65 60.0
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 2.1e-14 82.0 67 61.2
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 2.7e-14 81.6 67 59.7
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 2.7e-14 81.6 68 58.8
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 3.6e-14 81.3 77 57.1
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 6.1e-14 80.5 47 70.2
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 8.0e-14 80.1 58 62.1
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.4e-13 79.3 77 51.9
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 2.3e-13 78.6 65 56.9
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 2.3e-13 78.6 65 55.4
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.3e-13 78.6 68 60.3
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 4.0e-13 77.8 69 55.1
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 4.0e-13 77.8 78 56.4
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 5.2e-13 77.4 45 71.1
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 5.2e-13 77.4 57 61.4
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 6.8e-13 77.0 69 56.5
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 8.8e-13 76.6 49 63.3
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 8.8e-13 76.6 74 52.7
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 8.8e-13 76.6 58 65.5
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 8.8e-13 76.6 79 53.2
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 1.2e-12 76.3 65 55.4
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 1.2e-12 76.3 79 53.2
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 1.2e-12 76.3 45 68.9
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.5e-12 75.9 56 57.1
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 1.5e-12 75.9 78 55.1
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 1.5e-12 75.9 78 55.1
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 2.0e-12 75.5 79 54.4
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 2.6e-12 75.1 74 52.7
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 3.4e-12 74.7 70 51.4
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 3.4e-12 74.7 47 68.1
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 5.7e-12 73.9 77 46.8
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 7.5e-12 73.6 43 74.4
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 1.3e-11 72.8 74 51.4
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 1.3e-11 72.8 77 46.8
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 1.3e-11 72.8 68 52.9
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 2.2e-11 72.0 65 61.5
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 2.8e-11 71.6 77 49.4
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 2.8e-11 71.6 74 51.4
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 4.8e-11 70.9 58 60.3
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 6.3e-11 70.5 57 59.6
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 8.3e-11 70.1 77 51.9
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 8.3e-11 70.1 73 50.7
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 1.1e-10 69.7 74 50.0
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 1.1e-10 69.7 77 50.6
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.8e-10 68.9 43 62.8
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 1.8e-10 68.9 47 68.1
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 3.1e-10 68.2 74 47.3
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 3.1e-10 68.2 81 46.9
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 3.1e-10 68.2 47 61.7
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 4.1e-10 67.8 73 49.3
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 5.3e-10 67.4 62 54.8
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 5.3e-10 67.4 58 58.6
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 1.6e-09 65.9 45 57.8
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 1.6e-09 65.9 65 60.0
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.6e-09 65.9 37 83.8
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 2.0e-09 65.5 73 47.9
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 2.7e-09 65.1 73 46.6
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 2.7e-09 65.1 73 46.6
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 2.7e-09 65.1 73 46.6
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 2.7e-09 65.1 73 46.6
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 2.7e-09 65.1 73 46.6
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 4.5e-09 64.3 45 55.6
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 7.7e-09 63.5 73 49.3
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 5.0e-08 60.8 51 54.9
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 6.5e-08 60.5 57 57.9
MBI16_g37211_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 8.0e-06 53.5 42 59.5


User provided reference genes

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