Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G02566 Aquilegia oxysepala HOM05D005686 ORTHO05D006798 2.7e-109 398.7 202 100.0
Thecc.09G202000 Theobroma cacao HOM05D005686 ORTHO05D006798 8.3e-74 280.8 191 71.7
TAR383G0056 Trochodendron aralioides HOM05D005686 ORTHO05D006798 1.8e-73 279.6 191 75.9
CiPaw.08G000400 Carya illinoinensis HOM05D005686 ORTHO05D006798 2.4e-73 279.3 193 73.1
Gohir.A08G016700 Gossypium hirsutum HOM05D005686 ORTHO05D006798 3.5e-72 275.4 190 73.7
Hma1.2p1_0391F.1_g142870 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 4.5e-72 275.0 194 71.1
ClCG03G011610 Citrullus lanatus HOM05D005686 ORTHO05D006798 7.8e-72 274.2 205 70.2
GSVIVG01034255001 Vitis vinifera HOM05D005686 ORTHO05D006798 1.0e-71 273.9 194 71.1
Cpa.g.sc46.112 Carica papaya HOM05D005686 ORTHO05D006798 1.7e-71 273.1 191 72.3
TWI32G0912 Tripterygium wilfordii HOM05D005686 ORTHO05D006798 1.7e-71 273.1 194 70.1
MD04G1000800 Malus domestica HOM05D005686 ORTHO05D006798 3.9e-71 271.9 197 69.0
Manes.18G145300 Manihot esculenta HOM05D005686 ORTHO05D006798 3.9e-71 271.9 189 70.9
CSS0027001 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 5.0e-71 271.6 208 65.9
Cfa012874 Carpinus fangiana HOM05D005686 ORTHO05D006798 6.6e-71 271.2 185 75.1
FvH4_4g00120 Fragaria vesca HOM05D005686 ORTHO05D006798 8.6e-71 270.8 203 67.5
COL.COLO4_09003 Corchorus olitorius HOM05D005686 ORTHO05D006798 1.5e-70 270.0 195 68.7
FAN22G1914 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.5e-70 270.0 203 67.0
Ciclev10009500m.g Citrus clementina HOM05D005686 ORTHO05D006798 3.3e-70 268.9 191 69.6
FAN17G2251 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.3e-70 268.5 203 66.5
CANSAT80G2136 Cannabis sativa HOM05D005686 ORTHO05D006798 9.5e-70 267.3 203 66.0
Gohir.D08G027100 Gossypium hirsutum HOM05D005686 ORTHO05D006798 9.5e-70 267.3 186 73.1
Atru.chr7.1021 Acer truncatum HOM05D005686 ORTHO05D006798 1.2e-69 266.9 197 68.0
Sed0010250 Sechium edule HOM05D005686 ORTHO05D006798 1.2e-69 266.9 203 67.5
CSS0031712 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 1.6e-69 266.5 208 65.4
Gorai.004G024000 Gossypium raimondii HOM05D005686 ORTHO05D006798 4.7e-69 265.0 186 72.0
PGR142G1985 Punica granatum HOM05D005686 ORTHO05D006798 1.4e-68 263.5 192 69.3
PSO170G1777 Papaver somniferum HOM05D005686 ORTHO05D006798 3.1e-68 262.3 187 68.4
PSO063G6522 Papaver somniferum HOM05D005686 ORTHO05D006798 4.0e-68 261.9 188 68.1
ECA240G1888 Erigeron canadensis HOM05D005686 ORTHO05D006798 6.8e-68 261.2 199 64.8
RcHm_v2.0_Chr4g0384721 Rosa chinensis HOM05D005686 ORTHO05D006798 6.8e-68 261.2 198 67.2
Nitab4.5_0000019g0070 Nicotiana tabacum HOM05D005686 ORTHO05D006798 8.9e-68 260.8 195 67.2
Migut.J00862 Erythranthe guttata HOM05D005686 ORTHO05D006798 1.5e-67 260.0 205 65.4
Cc06_g23520 Coffea canephora HOM05D005686 ORTHO05D006798 2.0e-67 259.6 199 68.3
Eucgr.C02152 Eucalyptus grandis HOM05D005686 ORTHO05D006798 2.0e-67 259.6 204 66.2
Nitab4.5_0004788g0010 Nicotiana tabacum HOM05D005686 ORTHO05D006798 4.4e-67 258.5 195 66.2
Potri.006G080900 Populus trichocarpa HOM05D005686 ORTHO05D006798 7.5e-67 257.7 203 65.0
Lsat_1_v5_gn_7_57081 Lactuca sativa HOM05D005686 ORTHO05D006798 1.3e-66 256.9 199 62.8
DCAR_014582 Daucus carota HOM05D005686 ORTHO05D006798 1.7e-66 256.5 208 61.5
MSTRG.5975 Avicennia marina HOM05D005686 ORTHO05D006798 2.9e-66 255.8 192 67.2
Glyma.08G359900 Glycine max HOM05D005686 ORTHO05D006798 6.4e-66 254.6 193 64.8
ATR0626G256 Amborella trichopoda HOM05D005686 ORTHO05D006798 3.2e-65 252.3 209 62.2
vmacro20730 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 9.2e-65 250.8 249 55.8
Potri.018G151500 Populus trichocarpa HOM05D005686 ORTHO05D006798 1.2e-64 250.4 205 63.9
Glyma.01G001000 Glycine max HOM05D005686 ORTHO05D006798 4.6e-64 248.4 208 62.0
HanXRQChr03g0066651 Helianthus annuus HOM05D005686 ORTHO05D006798 7.8e-64 247.7 195 62.6
QL11p005743 Quercus lobata HOM05D005686 ORTHO05D006798 7.8e-64 247.7 255 55.3
Oeu000268.1 Olea europaea HOM05D005686 ORTHO05D006798 1.3e-63 246.9 199 61.8
BraA03t10552Z Brassica rapa HOM05D005686 ORTHO05D006798 1.7e-63 246.5 190 63.2
Ca_25642_v3 Cicer arietinum L. HOM05D005686 ORTHO05D006798 3.0e-63 245.7 203 62.1
Os06g0703800 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 3.0e-63 245.7 192 63.5
AL8G34220 Arabidopsis lyrata HOM05D005686 ORTHO05D006798 5.0e-63 245.0 194 61.3
Sp6g19800 Schrenkiella parvula HOM05D005686 ORTHO05D006798 8.6e-63 244.2 194 62.4
AUR62027958 Chenopodium quinoa HOM05D005686 ORTHO05D006798 1.9e-62 243.0 191 62.8
Peaxi162Scf00322g00914 Petunia axillaris HOM05D005686 ORTHO05D006798 1.9e-62 243.0 215 60.0
A10p16070 Brassica napus HOM05D005686 ORTHO05D006798 3.3e-62 242.3 190 61.6
BraA10t43622Z Brassica rapa HOM05D005686 ORTHO05D006798 3.3e-62 242.3 190 61.6
Sc23g0005700 Simmondsia chinensis HOM05D005686 ORTHO05D006798 3.3e-62 242.3 193 64.2
C03p14560 Brassica napus HOM05D005686 ORTHO05D006798 4.3e-62 241.9 191 63.4
AUR62020755 Chenopodium quinoa HOM05D005686 ORTHO05D006798 5.6e-62 241.5 192 62.5
MELO3C010013.2 Cucumis melo HOM05D005686 ORTHO05D006798 5.6e-62 241.5 287 50.5
AT5G58110 Arabidopsis thaliana HOM05D005686 ORTHO05D006798 7.3e-62 241.1 189 61.9
EL10Ac2g03596 Beta vulgaris HOM05D005686 ORTHO05D006798 7.3e-62 241.1 191 62.8
Thhalv10014732m.g Eutrema salsugineum HOM05D005686 ORTHO05D006798 7.3e-62 241.1 194 60.3
Os02g0139100 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 7.3e-62 241.1 200 61.0
BcaB08g36164 Brassica carinata HOM05D005686 ORTHO05D006798 9.5e-62 240.7 191 62.3
A03p12400 Brassica napus HOM05D005686 ORTHO05D006798 1.6e-61 240.0 190 61.6
CARHR271940 Cardamine hirsuta HOM05D005686 ORTHO05D006798 1.6e-61 240.0 195 60.0
Carub.0008s1867 Capsella rubella HOM05D005686 ORTHO05D006798 2.1e-61 239.6 189 61.4
BolC9t57855H Brassica oleracea HOM05D005686 ORTHO05D006798 2.8e-61 239.2 190 61.1
Lj2g0013423 Lotus japonicus HOM05D005686 ORTHO05D006798 2.8e-61 239.2 190 62.6
BolC3t13898H Brassica oleracea HOM05D005686 ORTHO05D006798 3.6e-61 238.8 190 61.6
BcaC04g19906 Brassica carinata HOM05D005686 ORTHO05D006798 8.0e-61 237.7 190 60.5
BcaB01g04476 Brassica carinata HOM05D005686 ORTHO05D006798 1.1e-60 237.3 194 60.3
C09p50020 Brassica napus HOM05D005686 ORTHO05D006798 1.1e-60 237.3 185 62.2
Zm00001eb232010 Zea mays HOM05D005686 ORTHO05D006798 1.1e-60 237.3 192 62.0
SGA_v2.0_scaffold21G09585 Striga asiatica HOM05D005686 ORTHO05D006798 3.1e-60 235.7 224 54.5
HanXRQChr09g0245301 Helianthus annuus HOM05D005686 ORTHO05D006798 5.2e-60 235.0 200 61.0
arahy.Tifrunner.gnm1.ann1.G6JDG7 Arachis hypogaea HOM05D005686 ORTHO05D006798 6.8e-60 234.6 204 61.8
arahy.Tifrunner.gnm1.ann1.1A52WD Arachis hypogaea HOM05D005686 ORTHO05D006798 8.9e-60 234.2 204 61.8
CDE04G0009 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 1.2e-59 233.8 195 61.5
unitig_699.g19254 Utricularia gibba HOM05D005686 ORTHO05D006798 1.2e-59 233.8 203 59.1
HPP92_017040 Vanilla planifolia HOM05D005686 ORTHO05D006798 1.2e-59 233.8 190 62.1
BcaB01g04553 Brassica carinata HOM05D005686 ORTHO05D006798 1.5e-59 233.4 195 58.5
Psat1g052000 Pisum sativum HOM05D005686 ORTHO05D006798 5.8e-59 231.5 190 62.1
THA.LOC104811843 Tarenaya hassleriana HOM05D005686 ORTHO05D006798 9.8e-59 230.7 196 59.2
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 1.7e-58 229.9 192 58.3
CsaV3_1G044180 Cucumis sativus L. HOM05D005686 ORTHO05D006798 1.6e-56 223.4 161 71.4
Lalb_Chr24g0401731 Lupinus albus HOM05D005686 ORTHO05D006798 1.6e-56 223.4 190 56.8
vmacro20894 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 1.3e-55 220.3 307 45.0
Prupe.1G000800 Prunus persica HOM05D005686 ORTHO05D006798 3.3e-54 215.7 231 51.1
Duzib170G0214 Durio zibethinus HOM05D005686 ORTHO05D006798 5.6e-54 214.9 188 60.1
Dinv26497 Davidia involucrata HOM05D005686 ORTHO05D006798 7.3e-54 214.5 146 75.3
FAN12G3064 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.1e-53 213.0 169 63.9
Medtr6g093220 Medicago truncatula HOM05D005686 ORTHO05D006798 5.8e-51 204.9 187 57.2
CAN.G357.2 Capsicum annuum HOM05D005686 ORTHO05D006798 2.2e-50 203.0 142 69.0
Oeu000956.1 Olea europaea HOM05D005686 ORTHO05D006798 1.1e-49 200.7 201 52.7
unitig_899.g15184 Utricularia gibba HOM05D000036 ORTHO05D000095 2.1e-48 196.4 198 54.0
Oeu018307.1 Olea europaea HOM05D005686 ORTHO05D006798 2.7e-48 196.1 206 52.4
Gorai.009G341500 Gossypium raimondii HOM05D005686 ORTHO05D006798 9.6e-46 187.6 152 63.8
TPR.G21341 Trifolium pratense HOM05D005686 ORTHO05D006798 8.1e-45 184.5 158 59.5
Gohir.D05G318500 Gossypium hirsutum HOM05D005686 ORTHO05D006798 1.4e-44 183.7 148 64.2
Hma1.2p1_0394F.1_g143240 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 2.2e-42 176.4 116 74.1
Pp3c16_2550 Physcomitrium patens HOM05D005686 ORTHO05D006798 2.1e-40 169.9 189 48.1
Mapoly0062s0098 Marchantia polymorpha HOM05D005686 ORTHO05D006798 3.0e-39 166.0 194 46.9
MBI13_g46510_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 1.5e-38 163.7 118 70.3
SEGI_10084 Sequoiadendron giganteum HOM05D005686 ORTHO05D006798 4.3e-38 162.2 146 54.8
Rhsim01G0102500 Rhododendron simsii HOM05D005686 ORTHO05D006798 1.3e-37 160.6 276 38.4
Pp3c5_4250 Physcomitrium patens HOM05D005686 ORTHO05D006798 2.8e-37 159.5 205 42.9
SMO164G0027 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 1.1e-36 157.5 194 47.4
Hund19347 Selenicereus undatus HOM05D005686 ORTHO05D006798 8.4e-34 147.9 191 46.6
Nn8g41269 Nelumbo nucifera HOM05D005686 ORTHO05D006798 1.4e-33 147.1 108 70.4
Actinidia07538 Actinidia chinensis HOM05D005686 ORTHO05D006798 1.9e-33 146.7 103 70.9
Oeu021239.2 Olea europaea HOM05D005686 ORTHO05D006798 2.5e-30 136.3 200 41.0
CDE07G1048 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 4.8e-29 132.1 118 58.5
MBI13_g08742_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 1.1e-28 131.0 134 57.5
Lju50E1T0 Lonicera japonica HOM05D005686 ORTHO05D006798 9.0e-28 127.9 91 71.4
VMungo0464G1575 Vigna mungo HOM05D005686 ORTHO05D006798 1.5e-27 127.1 276 36.2
Haze_21245 Corylus avellana HOM05D005686 ORTHO05D006798 1.9e-25 120.2 87 71.3
MBI13_g33582_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 8.7e-23 111.3 75 70.7
SMO146G0036 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 7.1e-17 91.7 186 31.7
SalBow6G6154 Salvia bowleyana HOM05D005686 ORTHO05D006798 2.7e-16 89.7 80 55.0
ClCG04G012860 Citrullus lanatus HOM05D005686 ORTHO05D006798 7.9e-16 88.2 92 57.6
MCO14G409 Micromonas commoda HOM05D005686 ORTHO05D006798 7.9e-16 88.2 161 32.3
Cre07.g321850 Chlamydomonas reinhardtii HOM05D005686 ORTHO05D006798 7.4e-14 81.6 195 30.3
FAN26G0690 Fragaria x ananassa HOM05D005686 ORTHO05D006798 3.7e-13 79.3 89 48.3
arahy.Tifrunner.gnm1.ann1.U8PUWG Arachis hypogaea HOM05D005611 ORTHO05D006852 8.2e-13 78.2 54 72.2
FvH4_1g23212 Fragaria vesca HOM05D005686 ORTHO05D006798 1.1e-12 77.8 90 46.7
FAN25G3234 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.4e-12 77.4 89 46.1
arahy.Tifrunner.gnm1.ann1.11LFFZ Arachis hypogaea HOM05D005686 ORTHO05D006798 2.4e-12 76.6 57 68.4
FAN17G2013 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.1e-12 75.9 89 46.1
C08p07420 Brassica napus HOM05D005686 ORTHO05D006798 3.2e-09 66.2 52 57.7
BolC8t47587H Brassica oleracea HOM05D005686 ORTHO05D006798 3.2e-09 66.2 52 57.7
FvH4_7g03690 Fragaria vesca HOM05D005686 ORTHO05D006798 7.1e-09 65.1 54 63.0
BcaC07g37307 Brassica carinata HOM05D005686 ORTHO05D006798 1.6e-08 63.9 64 53.1
FAN01G2054 Fragaria x ananassa HOM05D005686 ORTHO05D006798 3.5e-08 62.8 85 42.4
FAN07G2653 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.8e-07 60.5 52 59.6
FAN23G2196 Fragaria x ananassa HOM05D005686 ORTHO05D006798 3.0e-07 59.7 48 60.4
SEGI_23364 Sequoiadendron giganteum HOM05D005686 ORTHO05D006798 4.3e-06 55.8 37 67.6


User provided reference genes

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